Wall clock time and date at job start Tue Mar 31 2020 10:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37976 * 120.07153 * 2 1 4 4 C 1.38343 * 120.14372 * 180.27416 * 3 2 1 5 5 C 1.38383 * 120.28799 * 359.69606 * 4 3 2 6 6 C 1.37931 * 120.14821 * 0.02562 * 5 4 3 7 7 C 1.39558 * 120.07165 * 179.69491 * 2 1 3 8 8 C 1.47843 * 120.14737 * 0.02773 * 7 2 1 9 9 O 1.21557 * 120.00009 * 328.00374 * 8 7 2 10 10 N 1.34777 * 120.00008 * 148.00259 * 8 7 2 11 11 C 1.47675 * 134.45089 * 175.24226 * 10 8 7 12 12 C 1.53441 * 85.97134 * 155.71322 * 11 10 8 13 13 C 1.47672 * 134.45380 * 355.24205 * 10 8 7 14 14 C 1.52632 * 113.71442 * 268.85286 * 12 11 10 15 15 C 1.53185 * 109.35603 * 171.27514 * 14 12 11 16 16 C 1.52661 * 109.42950 * 58.92713 * 15 14 12 17 17 N 1.46904 * 109.34541 * 303.76878 * 16 15 14 18 18 C 1.36935 * 120.69147 * 235.31376 * 17 16 15 19 19 H 1.08000 * 119.99961 * 148.77329 * 18 17 16 20 20 C 1.38812 * 120.00056 * 328.76653 * 18 17 16 21 21 N 1.31622 * 119.99861 * 335.57748 * 20 18 17 22 22 Si 1.86796 * 120.00251 * 155.58044 * 20 18 17 23 23 H 1.48495 * 109.47050 * 59.99890 * 22 20 18 24 24 H 1.48501 * 109.47412 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46967 * 300.00227 * 22 20 18 26 26 C 1.47114 * 118.61696 * 55.04066 * 17 16 15 27 27 H 1.08997 * 109.47004 * 266.88451 * 1 2 3 28 28 H 1.09003 * 109.46935 * 26.89068 * 1 2 3 29 29 H 1.09001 * 109.46545 * 146.88643 * 1 2 3 30 30 H 1.07998 * 119.92988 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.85305 * 179.72278 * 4 3 2 32 32 H 1.08006 * 119.92533 * 180.02562 * 5 4 3 33 33 H 1.08005 * 120.07354 * 180.02562 * 6 5 4 34 34 H 1.08991 * 113.79275 * 41.44764 * 11 10 8 35 35 H 1.09003 * 113.89854 * 269.98767 * 11 10 8 36 36 H 1.09000 * 113.79247 * 90.02570 * 13 10 8 37 37 H 1.08996 * 113.79441 * 318.54794 * 13 10 8 38 38 H 1.09006 * 109.49030 * 291.23453 * 14 12 11 39 39 H 1.09000 * 109.49160 * 51.30580 * 14 12 11 40 40 H 1.09001 * 109.49178 * 179.02633 * 15 14 12 41 41 H 1.08999 * 109.48918 * 299.09444 * 15 14 12 42 42 H 1.09002 * 109.44677 * 183.79171 * 16 15 14 43 43 H 1.09001 * 109.37238 * 63.70796 * 16 15 14 44 44 H 0.96999 * 120.00230 * 354.31927 * 21 20 18 45 45 H 1.09004 * 109.63824 * 68.57854 * 26 17 16 46 46 H 1.09007 * 109.63796 * 189.19236 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5819 1.1958 -0.0057 5 6 4.2813 0.0017 -0.0051 6 6 3.6023 -1.1988 0.0006 7 6 2.2064 -1.2077 0.0064 8 6 1.4721 -2.4909 0.0126 9 8 0.3951 -2.5721 0.5704 10 7 1.9967 -3.5705 -0.6001 11 6 1.6009 -4.9886 -0.7152 12 6 2.4275 -5.0022 -2.0078 13 6 3.1978 -3.8095 -1.4255 14 6 1.6197 -4.6595 -3.2567 15 6 2.5707 -4.4880 -4.4453 16 6 3.3570 -5.7793 -4.6570 17 7 4.0613 -6.1293 -3.4162 18 6 5.4164 -6.3259 -3.4134 19 1 5.9950 -6.0861 -2.5335 20 6 6.0465 -6.8335 -4.5413 21 7 5.3673 -7.5594 -5.4039 22 14 7.8584 -6.4865 -4.8348 23 1 8.6553 -7.0274 -3.7047 24 1 8.2884 -7.1364 -6.0989 25 1 8.0718 -5.0203 -4.9339 26 6 3.2812 -6.2582 -2.1756 27 1 -0.3633 -0.0559 1.0261 28 1 -0.3633 0.9166 -0.4648 29 1 -0.3632 -0.8608 -0.5614 30 1 1.6585 2.1293 -0.0004 31 1 4.1182 2.1331 -0.0102 32 1 5.3613 0.0099 -0.0092 33 1 4.1494 -2.1301 0.0015 34 1 0.5328 -5.1354 -0.8747 35 1 2.0051 -5.6251 0.0720 36 1 4.0781 -4.0937 -0.8490 37 1 3.3981 -3.0196 -2.1494 38 1 0.9162 -5.4652 -3.4672 39 1 1.0719 -3.7316 -3.0923 40 1 1.9946 -4.2602 -5.3421 41 1 3.2643 -3.6723 -4.2412 42 1 4.0812 -5.6359 -5.4590 43 1 2.6693 -6.5816 -4.9245 44 1 4.4499 -7.8089 -5.2117 45 1 2.6356 -7.1343 -2.2382 46 1 3.9574 -6.3577 -1.3264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981595275.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:08 Heat of formation + Delta-G solvation = 40.272754 kcal Electronic energy + Delta-G solvation = -26801.923144 eV Core-core repulsion = 23271.779922 eV Total energy + Delta-G solvation = -3530.143222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.86830 -39.49738 -37.79326 -36.06086 -33.01209 -32.71534 -31.67789 -30.62756 -29.64548 -27.25004 -26.19203 -25.87390 -25.18712 -23.36921 -22.37083 -21.64481 -20.71797 -19.36297 -17.99228 -17.36726 -17.25296 -16.26977 -15.87698 -15.76262 -15.04826 -14.62186 -14.41858 -14.21799 -14.03664 -13.67070 -13.48115 -13.34287 -13.28453 -13.13902 -12.87229 -12.41545 -12.29547 -12.15696 -11.87244 -11.80522 -11.74847 -11.38751 -11.24101 -11.07532 -10.74537 -10.46855 -10.25882 -10.10835 -10.04362 -9.82345 -9.62557 -9.28802 -9.11134 -8.87701 -8.53157 -8.38879 -6.90190 -6.10516 -3.31634 0.81527 1.19944 2.82153 2.89926 3.46085 3.48922 3.67043 3.67598 4.34274 4.50346 4.63380 4.64808 4.70623 4.84823 5.02198 5.11857 5.18232 5.25511 5.27583 5.45311 5.46932 5.50994 5.58767 5.62314 5.64806 5.68499 5.71675 5.75793 5.79544 5.92007 5.94867 6.11371 6.14530 6.16883 6.26699 6.28731 6.38363 6.41502 6.45050 6.56231 6.63686 6.69257 6.74729 7.03283 7.15763 7.78717 7.96898 8.20531 8.54122 9.06471 9.79040 10.25372 11.16991 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016485 B = 0.003858 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.070650 B = 7256.838508 C = 8208.544782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.032 4.032 3 C -0.132 4.132 4 C -0.095 4.095 5 C -0.133 4.133 6 C -0.080 4.080 7 C -0.129 4.129 8 C 0.577 3.423 9 O -0.543 6.543 10 N -0.635 5.635 11 C 0.115 3.885 12 C -0.102 4.102 13 C 0.121 3.879 14 C -0.083 4.083 15 C -0.136 4.136 16 C 0.151 3.849 17 N -0.594 5.594 18 C -0.352 4.352 19 H 0.054 0.946 20 C -0.019 4.019 21 N -0.912 5.912 22 Si 1.063 2.937 23 H -0.293 1.293 24 H -0.286 1.286 25 H -0.293 1.293 26 C 0.163 3.837 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.016 0.984 44 H 0.270 0.730 45 H 0.023 0.977 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.779 14.172 8.877 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.033 4.033 3 C -0.150 4.150 4 C -0.113 4.113 5 C -0.151 4.151 6 C -0.098 4.098 7 C -0.132 4.132 8 C 0.368 3.632 9 O -0.422 6.422 10 N -0.369 5.369 11 C -0.007 4.007 12 C -0.104 4.104 13 C -0.001 4.001 14 C -0.120 4.120 15 C -0.175 4.175 16 C 0.025 3.975 17 N -0.318 5.318 18 C -0.481 4.481 19 H 0.072 0.928 20 C -0.222 4.222 21 N -0.551 5.551 22 Si 0.892 3.108 23 H -0.220 1.220 24 H -0.211 1.211 25 H -0.220 1.220 26 C 0.036 3.964 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.034 0.966 44 H 0.080 0.920 45 H 0.041 0.959 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.146 14.059 8.181 17.060 hybrid contribution -1.071 0.260 1.224 1.647 sum -6.217 14.319 9.405 18.225 Atomic orbital electron populations 1.20862 0.90310 1.02471 1.03251 1.19991 0.96617 0.91593 0.95120 1.21003 0.94300 0.97300 1.02439 1.21319 0.94221 0.98259 0.97550 1.21114 1.00282 0.92141 1.01577 1.21450 0.92924 0.98969 0.96489 1.19802 0.93805 0.92957 1.06588 1.17949 0.84891 0.82836 0.77558 1.90743 1.21453 1.84764 1.45285 1.50086 1.27069 1.08477 1.51298 1.23244 1.00713 0.80149 0.96628 1.22594 0.96173 0.97861 0.93815 1.23302 0.88381 0.97049 0.91373 1.21105 0.96940 1.00345 0.93638 1.21991 0.98080 1.01040 0.96397 1.20809 0.94522 0.91763 0.90394 1.44059 1.04261 1.80500 1.02963 1.19886 0.82199 1.42330 1.03709 0.92839 1.25860 1.05650 0.94882 0.95852 1.70775 1.12895 1.31742 1.39736 0.83560 0.75169 0.75972 0.76066 1.21962 1.21109 1.22013 1.20793 0.92785 0.91698 0.91081 0.90410 0.92083 0.90610 0.85532 0.85685 0.85400 0.85307 0.90286 0.89654 0.89521 0.90058 0.92043 0.93095 0.92882 0.92388 0.90564 0.96561 0.91956 0.95941 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 8.71 36.01 0.31 -1.02 16 2 C -0.03 -0.41 5.91 -104.22 -0.62 -1.03 16 3 C -0.13 -1.37 9.68 -39.64 -0.38 -1.76 16 4 C -0.10 -0.92 10.04 -39.49 -0.40 -1.32 16 5 C -0.13 -1.41 10.03 -39.64 -0.40 -1.80 16 6 C -0.08 -1.00 8.88 -39.19 -0.35 -1.34 16 7 C -0.13 -1.81 5.76 -104.97 -0.60 -2.42 16 8 C 0.58 9.25 7.28 -12.33 -0.09 9.16 16 9 O -0.54 -9.96 15.27 5.32 0.08 -9.88 16 10 N -0.64 -9.53 3.41 -181.60 -0.62 -10.15 16 11 C 0.12 1.64 7.98 -3.18 -0.03 1.62 16 12 C -0.10 -1.60 0.87 -154.43 -0.13 -1.74 16 13 C 0.12 1.80 5.51 -3.17 -0.02 1.78 16 14 C -0.08 -1.31 5.02 -26.82 -0.13 -1.45 16 15 C -0.14 -2.41 5.99 -26.81 -0.16 -2.57 16 16 C 0.15 3.30 4.66 -4.00 -0.02 3.28 16 17 N -0.59 -13.66 2.82 -172.75 -0.49 -14.14 16 18 C -0.35 -9.16 9.47 -15.06 -0.14 -9.31 16 19 H 0.05 1.39 7.94 -52.49 -0.42 0.97 16 20 C -0.02 -0.53 4.68 -17.43 -0.08 -0.61 16 21 N -0.91 -26.30 12.51 55.49 0.69 -25.61 16 22 Si 1.06 24.17 29.98 -169.99 -5.10 19.07 16 23 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 26 C 0.16 3.09 5.71 -3.81 -0.02 3.06 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 29 H 0.08 1.05 6.47 -51.93 -0.34 0.71 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 33 H 0.13 1.55 6.14 -52.48 -0.32 1.23 16 34 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 35 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 36 H 0.09 1.25 7.62 -51.93 -0.40 0.86 16 37 H 0.08 1.24 7.30 -51.93 -0.38 0.87 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.79 8.02 -51.93 -0.42 0.37 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.06 7.37 -51.93 -0.38 0.67 16 42 H 0.08 1.90 6.45 -51.93 -0.33 1.56 16 43 H 0.02 0.37 7.93 -51.93 -0.41 -0.04 16 44 H 0.27 7.84 6.87 -40.82 -0.28 7.56 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.06 1.11 7.78 -51.93 -0.40 0.70 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -30.48 362.35 -10.32 -40.80 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.09 Total: 1.90 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.26 Total: -7.44 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.41 Total: -49.90 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.10 Total: 19.07 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.48 -10.32 -40.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981595275.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.070 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds