Wall clock time and date at job start Tue Mar 31 2020 10:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37976 * 120.07153 * 2 1 4 4 C 1.38343 * 120.14372 * 180.27416 * 3 2 1 5 5 C 1.38383 * 120.28799 * 359.69606 * 4 3 2 6 6 C 1.37931 * 120.14821 * 0.02562 * 5 4 3 7 7 C 1.39558 * 120.07165 * 179.69491 * 2 1 3 8 8 C 1.47843 * 120.14737 * 0.02773 * 7 2 1 9 9 O 1.21557 * 120.00009 * 328.00374 * 8 7 2 10 10 N 1.34777 * 120.00008 * 148.00259 * 8 7 2 11 11 C 1.47675 * 134.45089 * 175.24226 * 10 8 7 12 12 C 1.53441 * 85.97134 * 155.71322 * 11 10 8 13 13 C 1.47672 * 134.45380 * 355.24205 * 10 8 7 14 14 C 1.52632 * 113.71442 * 268.85286 * 12 11 10 15 15 C 1.53185 * 109.35603 * 171.27514 * 14 12 11 16 16 C 1.52661 * 109.42950 * 58.92713 * 15 14 12 17 17 N 1.46904 * 109.34541 * 303.76878 * 16 15 14 18 18 C 1.36935 * 120.69147 * 235.31376 * 17 16 15 19 19 H 1.08000 * 119.99961 * 148.77329 * 18 17 16 20 20 C 1.38812 * 120.00056 * 328.76653 * 18 17 16 21 21 N 1.31622 * 119.99861 * 335.57748 * 20 18 17 22 22 Si 1.86796 * 120.00251 * 155.58044 * 20 18 17 23 23 H 1.48495 * 109.47050 * 59.99890 * 22 20 18 24 24 H 1.48501 * 109.47412 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46967 * 300.00227 * 22 20 18 26 26 C 1.47114 * 118.61696 * 55.04066 * 17 16 15 27 27 H 1.08997 * 109.47004 * 266.88451 * 1 2 3 28 28 H 1.09003 * 109.46935 * 26.89068 * 1 2 3 29 29 H 1.09001 * 109.46545 * 146.88643 * 1 2 3 30 30 H 1.07998 * 119.92988 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.85305 * 179.72278 * 4 3 2 32 32 H 1.08006 * 119.92533 * 180.02562 * 5 4 3 33 33 H 1.08005 * 120.07354 * 180.02562 * 6 5 4 34 34 H 1.08991 * 113.79275 * 41.44764 * 11 10 8 35 35 H 1.09003 * 113.89854 * 269.98767 * 11 10 8 36 36 H 1.09000 * 113.79247 * 90.02570 * 13 10 8 37 37 H 1.08996 * 113.79441 * 318.54794 * 13 10 8 38 38 H 1.09006 * 109.49030 * 291.23453 * 14 12 11 39 39 H 1.09000 * 109.49160 * 51.30580 * 14 12 11 40 40 H 1.09001 * 109.49178 * 179.02633 * 15 14 12 41 41 H 1.08999 * 109.48918 * 299.09444 * 15 14 12 42 42 H 1.09002 * 109.44677 * 183.79171 * 16 15 14 43 43 H 1.09001 * 109.37238 * 63.70796 * 16 15 14 44 44 H 0.96999 * 120.00230 * 354.31927 * 21 20 18 45 45 H 1.09004 * 109.63824 * 68.57854 * 26 17 16 46 46 H 1.09007 * 109.63796 * 189.19236 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5819 1.1958 -0.0057 5 6 4.2813 0.0017 -0.0051 6 6 3.6023 -1.1988 0.0006 7 6 2.2064 -1.2077 0.0064 8 6 1.4721 -2.4909 0.0126 9 8 0.3951 -2.5721 0.5704 10 7 1.9967 -3.5705 -0.6001 11 6 1.6009 -4.9886 -0.7152 12 6 2.4275 -5.0022 -2.0078 13 6 3.1978 -3.8095 -1.4255 14 6 1.6197 -4.6595 -3.2567 15 6 2.5707 -4.4880 -4.4453 16 6 3.3570 -5.7793 -4.6570 17 7 4.0613 -6.1293 -3.4162 18 6 5.4164 -6.3259 -3.4134 19 1 5.9950 -6.0861 -2.5335 20 6 6.0465 -6.8335 -4.5413 21 7 5.3673 -7.5594 -5.4039 22 14 7.8584 -6.4865 -4.8348 23 1 8.6553 -7.0274 -3.7047 24 1 8.2884 -7.1364 -6.0989 25 1 8.0718 -5.0203 -4.9339 26 6 3.2812 -6.2582 -2.1756 27 1 -0.3633 -0.0559 1.0261 28 1 -0.3633 0.9166 -0.4648 29 1 -0.3632 -0.8608 -0.5614 30 1 1.6585 2.1293 -0.0004 31 1 4.1182 2.1331 -0.0102 32 1 5.3613 0.0099 -0.0092 33 1 4.1494 -2.1301 0.0015 34 1 0.5328 -5.1354 -0.8747 35 1 2.0051 -5.6251 0.0720 36 1 4.0781 -4.0937 -0.8490 37 1 3.3981 -3.0196 -2.1494 38 1 0.9162 -5.4652 -3.4672 39 1 1.0719 -3.7316 -3.0923 40 1 1.9946 -4.2602 -5.3421 41 1 3.2643 -3.6723 -4.2412 42 1 4.0812 -5.6359 -5.4590 43 1 2.6693 -6.5816 -4.9245 44 1 4.4499 -7.8089 -5.2117 45 1 2.6356 -7.1343 -2.2382 46 1 3.9574 -6.3577 -1.3264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981595275.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:08 Heat of formation + Delta-G solvation = 24.629957 kcal Electronic energy + Delta-G solvation = -26802.601467 eV Core-core repulsion = 23271.779922 eV Total energy + Delta-G solvation = -3530.821544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.08519 -40.55939 -38.97464 -37.66394 -34.62723 -33.67264 -32.74734 -32.29301 -31.02370 -28.24121 -27.40308 -27.17921 -26.97303 -24.35269 -24.02606 -22.64072 -22.18713 -20.54132 -19.37369 -19.23307 -18.34793 -17.38997 -17.07159 -16.65415 -16.27154 -16.14794 -15.88277 -15.46692 -15.41754 -15.26030 -14.84082 -14.60755 -14.38314 -14.20123 -14.00462 -13.96203 -13.47681 -13.28943 -13.10600 -13.01783 -12.90532 -12.77289 -12.58100 -12.40457 -12.08279 -11.97828 -11.90163 -11.78212 -11.63214 -11.35010 -11.05733 -10.86019 -10.38963 -10.01144 -9.81502 -9.63452 -8.84639 -8.16859 -5.37329 -0.09932 0.36149 1.62689 1.69137 1.72095 1.73242 1.87418 2.68833 2.78001 3.14402 3.29253 3.39195 3.64513 3.73073 3.84060 3.85078 3.94563 4.11846 4.17932 4.24517 4.31388 4.36105 4.41925 4.48879 4.50792 4.56339 4.60893 4.69387 4.70815 4.73762 4.82003 4.86163 4.88410 4.96584 5.00018 5.04151 5.17425 5.22346 5.23287 5.32925 5.34815 5.47440 5.48273 5.52875 5.92566 5.94332 6.45796 6.58126 7.00644 7.11583 7.82307 8.29447 9.06604 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016485 B = 0.003858 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.070650 B = 7256.838508 C = 8208.544782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.050 4.050 3 C -0.131 4.131 4 C -0.087 4.087 5 C -0.136 4.136 6 C -0.091 4.091 7 C -0.156 4.156 8 C 0.573 3.427 9 O -0.574 6.574 10 N -0.634 5.634 11 C 0.119 3.881 12 C -0.097 4.097 13 C 0.130 3.870 14 C -0.076 4.076 15 C -0.123 4.123 16 C 0.158 3.842 17 N -0.610 5.610 18 C -0.349 4.349 19 H 0.054 0.946 20 C -0.072 4.072 21 N -0.944 5.944 22 Si 1.110 2.890 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.278 1.278 26 C 0.165 3.835 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.150 0.850 33 H 0.126 0.874 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.040 0.960 43 H 0.003 0.997 44 H 0.254 0.746 45 H 0.020 0.980 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 16.798 9.892 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.051 4.051 3 C -0.148 4.148 4 C -0.105 4.105 5 C -0.154 4.154 6 C -0.110 4.110 7 C -0.159 4.159 8 C 0.366 3.634 9 O -0.456 6.456 10 N -0.367 5.367 11 C -0.003 4.003 12 C -0.099 4.099 13 C 0.008 3.992 14 C -0.113 4.113 15 C -0.162 4.162 16 C 0.032 3.968 17 N -0.334 5.334 18 C -0.479 4.479 19 H 0.072 0.928 20 C -0.269 4.269 21 N -0.586 5.586 22 Si 0.935 3.065 23 H -0.202 1.202 24 H -0.224 1.224 25 H -0.205 1.205 26 C 0.039 3.961 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.173 0.827 31 H 0.177 0.823 32 H 0.168 0.832 33 H 0.144 0.856 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.021 0.979 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.544 16.695 9.224 19.608 hybrid contribution -1.279 -0.529 0.954 1.681 sum -5.823 16.166 10.178 19.971 Atomic orbital electron populations 1.20798 0.90288 1.02602 1.02685 1.20222 0.96955 0.92106 0.95797 1.21351 0.94908 0.97427 1.01146 1.21755 0.94103 0.99304 0.95366 1.21444 1.01514 0.91762 1.00657 1.21523 0.92367 0.99908 0.97152 1.19813 0.94530 0.92430 1.09106 1.18347 0.84597 0.83577 0.76918 1.90715 1.22863 1.85323 1.46715 1.50062 1.26946 1.08611 1.51094 1.23265 1.00802 0.80243 0.95993 1.22416 0.96265 0.96626 0.94622 1.23217 0.88441 0.96311 0.91213 1.21041 0.96536 1.01001 0.92746 1.21827 0.97999 0.98257 0.98144 1.20650 0.93621 0.93381 0.89118 1.44257 1.03947 1.80815 1.04391 1.20149 0.83780 1.40549 1.03419 0.92841 1.27093 1.08834 0.94768 0.96185 1.70895 1.12427 1.34332 1.40902 0.82923 0.71297 0.76491 0.75814 1.20196 1.22353 1.20450 1.20858 0.92750 0.93170 0.89336 0.91044 0.89478 0.93155 0.82750 0.82286 0.83218 0.85584 0.89860 0.88210 0.88994 0.90305 0.91591 0.92063 0.91074 0.92734 0.94101 0.97888 0.93601 0.96240 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 8.71 71.24 0.62 -1.83 16 2 C -0.05 -1.19 5.91 -19.61 -0.12 -1.31 16 3 C -0.13 -2.29 9.68 22.23 0.22 -2.07 16 4 C -0.09 -1.35 10.04 22.33 0.22 -1.13 16 5 C -0.14 -2.48 10.03 22.23 0.22 -2.25 16 6 C -0.09 -2.14 8.88 22.53 0.20 -1.94 16 7 C -0.16 -4.26 5.76 -20.09 -0.12 -4.38 16 8 C 0.57 18.23 7.28 86.79 0.63 18.86 16 9 O -0.57 -21.24 15.27 -3.90 -0.06 -21.30 16 10 N -0.63 -18.49 3.41 -846.73 -2.89 -21.38 16 11 C 0.12 3.26 7.98 86.30 0.69 3.95 16 12 C -0.10 -2.95 0.87 -52.04 -0.05 -3.00 16 13 C 0.13 3.73 5.51 86.30 0.48 4.20 16 14 C -0.08 -2.32 5.02 30.53 0.15 -2.16 16 15 C -0.12 -4.28 5.99 30.54 0.18 -4.10 16 16 C 0.16 7.05 4.66 86.19 0.40 7.45 16 17 N -0.61 -28.24 2.82 -700.45 -1.97 -30.21 16 18 C -0.35 -18.24 9.47 84.03 0.80 -17.44 16 19 H 0.05 2.76 7.94 -2.91 -0.02 2.73 16 20 C -0.07 -3.92 4.68 84.86 0.40 -3.52 16 21 N -0.94 -55.94 12.51 21.65 0.27 -55.67 16 22 Si 1.11 48.87 29.98 68.60 2.06 50.92 16 23 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 24 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 25 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 26 C 0.16 6.16 5.71 86.19 0.49 6.65 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.09 1.45 8.07 -2.39 -0.02 1.43 16 29 H 0.05 1.40 6.47 -2.39 -0.02 1.38 16 30 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 32 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.13 2.91 6.14 -2.91 -0.02 2.89 16 34 H 0.08 2.24 8.09 -2.39 -0.02 2.22 16 35 H 0.10 2.46 8.09 -2.39 -0.02 2.44 16 36 H 0.09 2.55 7.62 -2.39 -0.02 2.53 16 37 H 0.08 2.32 7.30 -2.39 -0.02 2.30 16 38 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.06 1.79 8.02 -2.39 -0.02 1.77 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 1.94 7.37 -2.39 -0.02 1.92 16 42 H 0.04 2.10 6.45 -2.39 -0.02 2.08 16 43 H 0.00 0.14 7.93 -2.39 -0.02 0.13 16 44 H 0.25 15.37 6.87 -92.71 -0.64 14.73 16 45 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.06 2.24 7.78 -2.38 -0.02 2.22 16 Total: -1.00 -67.40 362.35 3.93 -63.47 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 1.10 Total: 18.17 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 5.42 Total: -4.01 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -4.59 Total: -107.26 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.06 Total: -21.30 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.06 Total: 50.92 kcal Total: -67.40 3.93 -63.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981595275.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.102 kcal (2) G-P(sol) polarization free energy of solvation -67.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds