Wall clock time and date at job start Tue Mar 31 2020 10:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38380 * 119.92467 * 2 1 4 4 C 1.38337 * 120.29332 * 180.02562 * 3 2 1 5 5 C 1.37976 * 120.14262 * 359.97297 * 4 3 2 6 6 C 1.39551 * 119.85515 * 0.02851 * 5 4 3 7 7 C 1.47844 * 120.14670 * 179.97438 * 6 5 4 8 8 O 1.21550 * 120.00320 * 179.97438 * 7 6 5 9 9 N 1.34779 * 119.99940 * 0.02562 * 7 6 5 10 10 C 1.46503 * 120.00116 * 179.97438 * 9 7 6 11 11 C 1.55234 * 113.16816 * 299.95609 * 10 9 7 12 12 C 1.54225 * 106.82033 * 239.89973 * 11 10 9 13 13 C 1.54759 * 104.15304 * 334.35456 * 12 11 10 14 14 C 1.54772 * 103.21607 * 37.81220 * 13 12 11 15 15 H 1.09000 * 111.87168 * 85.85054 * 14 13 12 16 16 N 1.46974 * 108.69210 * 209.80340 * 14 13 12 17 17 C 1.36938 * 125.57862 * 295.10210 * 16 14 13 18 18 H 1.08009 * 120.00020 * 13.89028 * 17 16 14 19 19 C 1.38813 * 120.00398 * 193.89351 * 17 16 14 20 20 N 1.31622 * 119.99471 * 27.02026 * 19 17 16 21 21 Si 1.86795 * 120.00301 * 207.02184 * 19 17 16 22 22 H 1.48499 * 109.47317 * 89.99588 * 21 19 17 23 23 H 1.48493 * 109.47276 * 209.99975 * 21 19 17 24 24 H 1.48505 * 109.47158 * 329.99789 * 21 19 17 25 25 C 1.47368 * 108.84757 * 115.36162 * 16 14 13 26 26 C 1.54921 * 112.77792 * 64.05893 * 10 9 7 27 27 C 1.37933 * 119.93079 * 180.27896 * 2 1 3 28 28 H 1.09005 * 109.47005 * 90.00366 * 1 2 3 29 29 H 1.08999 * 109.46887 * 209.99728 * 1 2 3 30 30 H 1.08992 * 109.47311 * 330.00434 * 1 2 3 31 31 H 1.08007 * 119.85638 * 0.03891 * 3 2 1 32 32 H 1.07998 * 119.92906 * 180.02562 * 4 3 2 33 33 H 1.08004 * 120.07293 * 180.02562 * 5 4 3 34 34 H 0.96992 * 119.99976 * 359.97438 * 9 7 6 35 35 H 1.09005 * 110.52608 * 120.22890 * 11 10 9 36 36 H 1.08996 * 109.40578 * 358.95553 * 11 10 9 37 37 H 1.08997 * 110.49253 * 215.68725 * 12 11 10 38 38 H 1.08997 * 110.49234 * 93.02324 * 12 11 10 39 39 H 1.08992 * 110.67075 * 279.37576 * 13 12 11 40 40 H 1.09002 * 110.66427 * 156.24098 * 13 12 11 41 41 H 0.96998 * 120.00179 * 5.85604 * 20 19 17 42 42 H 1.08992 * 110.36870 * 93.86950 * 25 16 14 43 43 H 1.08996 * 110.37309 * 216.20945 * 25 16 14 44 44 H 1.08996 * 110.96609 * 204.57265 * 26 10 9 45 45 H 1.08999 * 110.96698 * 328.29977 * 26 10 9 46 46 H 1.08008 * 120.07247 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2082 -0.0005 5 6 4.2812 0.0195 -0.0005 6 6 3.5912 -1.1935 -0.0005 7 6 4.3353 -2.4710 -0.0011 8 8 3.7317 -3.5260 -0.0006 9 7 5.6831 -2.4658 -0.0010 10 6 6.4205 -3.7317 -0.0010 11 6 6.1121 -4.6182 1.2355 12 6 7.4479 -4.8310 1.9764 13 6 8.5222 -4.6654 0.8748 14 6 7.9575 -3.5211 -0.0010 15 1 8.2337 -2.5400 0.3854 16 7 8.4195 -3.7136 -1.3829 17 6 9.7213 -3.6532 -1.8035 18 1 10.5239 -3.6745 -1.0809 19 6 10.0097 -3.5644 -3.1584 20 7 9.1393 -3.0199 -3.9821 21 14 11.6327 -4.2178 -3.8128 22 1 11.4746 -5.6444 -4.1934 23 1 12.0393 -3.4298 -5.0039 24 1 12.6744 -4.0985 -2.7612 25 6 7.2521 -3.9763 -2.2430 26 6 6.1826 -4.5645 -1.2855 27 6 2.1953 -1.1954 -0.0058 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5137 31 1 1.6538 2.1326 0.0006 32 1 4.1135 2.1476 -0.0001 33 1 5.3612 0.0278 -0.0005 34 1 6.1648 -1.6240 -0.0010 35 1 5.7010 -5.5785 0.9243 36 1 5.4041 -4.1019 1.8836 37 1 7.4915 -5.8324 2.4045 38 1 7.5780 -4.0770 2.7527 39 1 8.6214 -5.5819 0.2933 40 1 9.4794 -4.3797 1.3109 41 1 8.3352 -2.6046 -3.6329 42 1 6.8950 -3.0492 -2.6913 43 1 7.5063 -4.7000 -3.0173 44 1 6.3588 -5.6243 -1.1014 45 1 5.1785 -4.4002 -1.6764 46 1 1.6553 -2.1308 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989928597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:38 Heat of formation + Delta-G solvation = 7.514809 kcal Electronic energy + Delta-G solvation = -26736.167507 eV Core-core repulsion = 23204.603794 eV Total energy + Delta-G solvation = -3531.563713 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.50598 -39.30429 -37.79972 -34.52918 -33.82531 -32.80759 -31.58304 -31.13506 -29.70766 -27.18011 -26.53611 -26.21596 -23.84786 -23.82209 -21.96379 -20.99131 -20.12233 -19.52048 -18.93463 -17.54424 -17.49054 -16.17837 -16.04471 -15.18203 -15.12275 -14.77180 -14.56005 -13.96598 -13.89098 -13.71596 -13.60858 -13.52742 -13.24316 -12.99047 -12.55972 -12.46756 -12.18831 -11.86241 -11.75364 -11.71808 -11.54381 -11.23089 -10.93610 -10.66714 -10.60419 -10.38048 -10.29035 -10.17510 -10.01190 -9.92458 -9.58122 -9.48401 -9.11076 -8.90919 -8.65949 -8.40316 -6.96331 -6.07575 -3.11918 0.76926 1.19041 2.91542 3.29315 3.51564 3.54357 3.69965 3.79879 4.54986 4.57421 4.60461 4.69188 4.82844 4.96394 5.05665 5.08644 5.16921 5.21506 5.36292 5.36697 5.43054 5.54143 5.58031 5.67135 5.73840 5.78063 5.83591 5.87809 6.01512 6.03324 6.14594 6.18546 6.19321 6.22816 6.31792 6.34084 6.37216 6.46079 6.59171 6.68684 6.73023 6.86908 6.97215 7.10199 7.11136 7.72879 7.79428 8.40004 8.49017 9.02595 9.82905 10.36830 11.25111 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.003708 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.616532 B = 7549.377897 C = 8428.159152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.100 4.100 4 C -0.123 4.123 5 C -0.091 4.091 6 C -0.125 4.125 7 C 0.557 3.443 8 O -0.535 6.535 9 N -0.699 5.699 10 C 0.160 3.840 11 C -0.109 4.109 12 C -0.125 4.125 13 C -0.125 4.125 14 C 0.162 3.838 15 H 0.045 0.955 16 N -0.596 5.596 17 C -0.332 4.332 18 H 0.067 0.933 19 C -0.026 4.026 20 N -0.921 5.921 21 Si 1.067 2.933 22 H -0.294 1.294 23 H -0.291 1.291 24 H -0.293 1.293 25 C 0.145 3.855 26 C -0.133 4.133 27 C -0.063 4.063 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.399 0.601 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.269 0.731 42 H 0.023 0.977 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.372 6.286 10.964 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.118 4.118 4 C -0.141 4.141 5 C -0.110 4.110 6 C -0.128 4.128 7 C 0.344 3.656 8 O -0.413 6.413 9 N -0.349 5.349 10 C 0.074 3.926 11 C -0.148 4.148 12 C -0.163 4.163 13 C -0.166 4.166 14 C 0.054 3.946 15 H 0.062 0.938 16 N -0.321 5.321 17 C -0.460 4.460 18 H 0.085 0.915 19 C -0.227 4.227 20 N -0.562 5.562 21 Si 0.897 3.103 22 H -0.221 1.221 23 H -0.217 1.217 24 H -0.220 1.220 25 C 0.020 3.980 26 C -0.172 4.172 27 C -0.081 4.081 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.776 5.266 9.525 16.783 hybrid contribution -0.498 0.864 1.347 1.676 sum -13.275 6.130 10.872 18.220 Atomic orbital electron populations 1.20791 0.90763 1.02892 1.02550 1.19901 0.96401 0.92841 1.00672 1.21222 0.94302 0.97594 0.98702 1.21091 0.94246 0.98053 1.00700 1.21371 1.00027 0.91893 0.97698 1.20050 0.94395 0.93171 1.05179 1.18220 0.82180 0.88700 0.76517 1.90743 1.68507 1.32268 1.49790 1.45792 1.05615 1.09404 1.74092 1.21877 0.91616 0.83316 0.95817 1.22518 0.97064 0.99494 0.95704 1.22361 0.95242 1.00790 0.97887 1.22862 0.97141 1.00397 0.96158 1.21782 0.88681 0.96062 0.88091 0.93781 1.44609 1.02947 1.82921 1.01664 1.19769 0.81296 1.51057 0.93885 0.91523 1.25689 1.05066 0.99317 0.92677 1.70752 1.13137 1.34322 1.38018 0.83483 0.74820 0.76530 0.75467 1.22136 1.21738 1.21960 1.21621 0.86227 0.97149 0.93003 1.23186 0.99772 0.98832 0.95445 1.21152 0.92666 0.98339 0.95985 0.91001 0.91315 0.91471 0.85754 0.85383 0.85554 0.76472 0.91039 0.92263 0.92060 0.92282 0.90752 0.92219 0.91911 0.95937 0.92787 0.90810 0.91134 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.10 -1.01 5.87 -104.68 -0.61 -1.62 16 3 C -0.10 -0.94 9.69 -39.49 -0.38 -1.33 16 4 C -0.12 -1.23 10.03 -39.64 -0.40 -1.63 16 5 C -0.09 -1.08 9.54 -39.19 -0.37 -1.45 16 6 C -0.12 -1.73 5.87 -104.97 -0.62 -2.34 16 7 C 0.56 9.13 6.99 -12.33 -0.09 9.04 16 8 O -0.54 -10.10 14.29 5.32 0.08 -10.02 16 9 N -0.70 -11.35 5.23 -45.47 -0.24 -11.59 16 10 C 0.16 2.88 0.77 -128.49 -0.10 2.78 16 11 C -0.11 -1.76 5.34 -24.91 -0.13 -1.90 16 12 C -0.12 -1.85 6.84 -25.16 -0.17 -2.03 16 13 C -0.13 -2.26 6.22 -24.87 -0.15 -2.42 16 14 C 0.16 3.24 3.61 -65.61 -0.24 3.00 16 15 H 0.04 0.89 7.97 -51.93 -0.41 0.48 16 16 N -0.60 -14.61 2.97 -160.97 -0.48 -15.08 16 17 C -0.33 -9.12 9.76 -15.06 -0.15 -9.26 16 18 H 0.07 1.82 7.96 -52.48 -0.42 1.41 16 19 C -0.03 -0.74 5.09 -17.43 -0.09 -0.83 16 20 N -0.92 -27.69 12.81 55.49 0.71 -26.98 16 21 Si 1.07 25.39 30.00 -169.99 -5.10 20.29 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.15 3.46 5.21 -2.44 -0.01 3.44 16 26 C -0.13 -2.66 5.83 -24.59 -0.14 -2.80 16 27 C -0.06 -0.79 9.24 -39.19 -0.36 -1.15 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.13 1.35 6.41 -52.48 -0.34 1.01 16 34 H 0.40 5.89 6.52 -40.82 -0.27 5.62 16 35 H 0.07 1.18 7.41 -51.93 -0.38 0.79 16 36 H 0.06 0.95 7.48 -51.93 -0.39 0.57 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.27 8.10 5.83 -40.82 -0.24 7.87 16 42 H 0.02 0.58 6.86 -51.93 -0.36 0.22 16 43 H 0.05 1.42 7.70 -51.93 -0.40 1.02 16 44 H 0.07 1.44 7.60 -51.93 -0.39 1.05 16 45 H 0.07 1.43 6.84 -51.93 -0.36 1.07 16 46 H 0.13 1.71 7.65 -52.48 -0.40 1.31 16 LS Contribution 361.67 15.07 5.45 5.45 Total: -1.00 -32.03 361.67 -10.18 -42.21 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.94 Total: 6.70 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -3.66 Total: -10.98 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.00 Total: -53.65 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.10 Total: 20.29 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.03 -10.18 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989928597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.728 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds