Wall clock time and date at job start Tue Mar 31 2020 10:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38380 * 119.92467 * 2 1 4 4 C 1.38337 * 120.29332 * 180.02562 * 3 2 1 5 5 C 1.37976 * 120.14262 * 359.97297 * 4 3 2 6 6 C 1.39551 * 119.85515 * 0.02851 * 5 4 3 7 7 C 1.47844 * 120.14670 * 179.97438 * 6 5 4 8 8 O 1.21550 * 120.00320 * 179.97438 * 7 6 5 9 9 N 1.34779 * 119.99940 * 0.02562 * 7 6 5 10 10 C 1.46503 * 120.00116 * 179.97438 * 9 7 6 11 11 C 1.55234 * 113.16816 * 299.95609 * 10 9 7 12 12 C 1.54225 * 106.82033 * 239.89973 * 11 10 9 13 13 C 1.54759 * 104.15304 * 334.35456 * 12 11 10 14 14 C 1.54772 * 103.21607 * 37.81220 * 13 12 11 15 15 H 1.09000 * 111.87168 * 85.85054 * 14 13 12 16 16 N 1.46974 * 108.69210 * 209.80340 * 14 13 12 17 17 C 1.36938 * 125.57862 * 295.10210 * 16 14 13 18 18 H 1.08009 * 120.00020 * 13.89028 * 17 16 14 19 19 C 1.38813 * 120.00398 * 193.89351 * 17 16 14 20 20 N 1.31622 * 119.99471 * 27.02026 * 19 17 16 21 21 Si 1.86795 * 120.00301 * 207.02184 * 19 17 16 22 22 H 1.48499 * 109.47317 * 89.99588 * 21 19 17 23 23 H 1.48493 * 109.47276 * 209.99975 * 21 19 17 24 24 H 1.48505 * 109.47158 * 329.99789 * 21 19 17 25 25 C 1.47368 * 108.84757 * 115.36162 * 16 14 13 26 26 C 1.54921 * 112.77792 * 64.05893 * 10 9 7 27 27 C 1.37933 * 119.93079 * 180.27896 * 2 1 3 28 28 H 1.09005 * 109.47005 * 90.00366 * 1 2 3 29 29 H 1.08999 * 109.46887 * 209.99728 * 1 2 3 30 30 H 1.08992 * 109.47311 * 330.00434 * 1 2 3 31 31 H 1.08007 * 119.85638 * 0.03891 * 3 2 1 32 32 H 1.07998 * 119.92906 * 180.02562 * 4 3 2 33 33 H 1.08004 * 120.07293 * 180.02562 * 5 4 3 34 34 H 0.96992 * 119.99976 * 359.97438 * 9 7 6 35 35 H 1.09005 * 110.52608 * 120.22890 * 11 10 9 36 36 H 1.08996 * 109.40578 * 358.95553 * 11 10 9 37 37 H 1.08997 * 110.49253 * 215.68725 * 12 11 10 38 38 H 1.08997 * 110.49234 * 93.02324 * 12 11 10 39 39 H 1.08992 * 110.67075 * 279.37576 * 13 12 11 40 40 H 1.09002 * 110.66427 * 156.24098 * 13 12 11 41 41 H 0.96998 * 120.00179 * 5.85604 * 20 19 17 42 42 H 1.08992 * 110.36870 * 93.86950 * 25 16 14 43 43 H 1.08996 * 110.37309 * 216.20945 * 25 16 14 44 44 H 1.08996 * 110.96609 * 204.57265 * 26 10 9 45 45 H 1.08999 * 110.96698 * 328.29977 * 26 10 9 46 46 H 1.08008 * 120.07247 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2082 -0.0005 5 6 4.2812 0.0195 -0.0005 6 6 3.5912 -1.1935 -0.0005 7 6 4.3353 -2.4710 -0.0011 8 8 3.7317 -3.5260 -0.0006 9 7 5.6831 -2.4658 -0.0010 10 6 6.4205 -3.7317 -0.0010 11 6 6.1121 -4.6182 1.2355 12 6 7.4479 -4.8310 1.9764 13 6 8.5222 -4.6654 0.8748 14 6 7.9575 -3.5211 -0.0010 15 1 8.2337 -2.5400 0.3854 16 7 8.4195 -3.7136 -1.3829 17 6 9.7213 -3.6532 -1.8035 18 1 10.5239 -3.6745 -1.0809 19 6 10.0097 -3.5644 -3.1584 20 7 9.1393 -3.0199 -3.9821 21 14 11.6327 -4.2178 -3.8128 22 1 11.4746 -5.6444 -4.1934 23 1 12.0393 -3.4298 -5.0039 24 1 12.6744 -4.0985 -2.7612 25 6 7.2521 -3.9763 -2.2430 26 6 6.1826 -4.5645 -1.2855 27 6 2.1953 -1.1954 -0.0058 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5137 31 1 1.6538 2.1326 0.0006 32 1 4.1135 2.1476 -0.0001 33 1 5.3612 0.0278 -0.0005 34 1 6.1648 -1.6240 -0.0010 35 1 5.7010 -5.5785 0.9243 36 1 5.4041 -4.1019 1.8836 37 1 7.4915 -5.8324 2.4045 38 1 7.5780 -4.0770 2.7527 39 1 8.6214 -5.5819 0.2933 40 1 9.4794 -4.3797 1.3109 41 1 8.3352 -2.6046 -3.6329 42 1 6.8950 -3.0492 -2.6913 43 1 7.5063 -4.7000 -3.0173 44 1 6.3588 -5.6243 -1.1014 45 1 5.1785 -4.4002 -1.6764 46 1 1.6553 -2.1308 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989928597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:37 Heat of formation + Delta-G solvation = -10.566580 kcal Electronic energy + Delta-G solvation = -26736.951575 eV Core-core repulsion = 23204.603794 eV Total energy + Delta-G solvation = -3532.347781 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.84209 -40.47006 -39.08032 -36.34122 -35.08607 -33.82507 -33.29233 -32.21208 -31.34698 -28.25880 -28.10434 -27.51143 -25.76659 -24.95131 -22.83813 -22.47606 -21.68364 -20.98133 -20.32486 -19.45622 -18.71981 -17.44792 -17.07868 -16.77283 -16.26751 -16.02402 -15.75177 -15.58657 -15.34082 -15.15557 -14.94207 -14.66538 -14.54156 -14.31458 -13.97352 -13.59926 -13.29768 -13.21006 -13.07256 -12.88395 -12.68186 -12.55580 -12.42229 -12.23965 -12.04632 -12.00349 -11.93460 -11.86765 -11.68818 -11.53780 -11.36711 -10.93213 -10.51776 -10.18595 -9.92162 -9.70502 -9.02645 -8.29258 -5.29773 -0.17425 0.34780 1.57815 1.65636 1.80287 1.82223 2.01695 2.64174 2.83025 3.16936 3.23845 3.47311 3.64143 3.76263 3.79776 3.82197 3.93282 4.12516 4.19708 4.23274 4.31675 4.34706 4.36737 4.41221 4.50742 4.64763 4.70243 4.75044 4.79528 4.82381 4.86475 4.91750 4.96705 5.00560 5.05181 5.12223 5.21322 5.23950 5.25389 5.30498 5.39303 5.48242 5.54412 5.56882 5.70839 5.92955 6.31409 6.44758 6.89209 7.11285 7.71782 8.29850 9.03426 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.003708 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.616532 B = 7549.377897 C = 8428.159152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.092 4.092 4 C -0.122 4.122 5 C -0.100 4.100 6 C -0.149 4.149 7 C 0.556 3.444 8 O -0.566 6.566 9 N -0.698 5.698 10 C 0.168 3.832 11 C -0.102 4.102 12 C -0.109 4.109 13 C -0.121 4.121 14 C 0.154 3.846 15 H 0.047 0.953 16 N -0.612 5.612 17 C -0.331 4.331 18 H 0.068 0.932 19 C -0.083 4.083 20 N -0.953 5.953 21 Si 1.117 2.883 22 H -0.289 1.289 23 H -0.297 1.297 24 H -0.269 1.269 25 C 0.157 3.843 26 C -0.121 4.121 27 C -0.079 4.079 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.131 0.869 34 H 0.406 0.594 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.255 0.745 42 H -0.001 1.001 43 H 0.018 0.982 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.858 7.501 13.028 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.110 4.110 4 C -0.140 4.140 5 C -0.119 4.119 6 C -0.152 4.152 7 C 0.345 3.655 8 O -0.447 6.447 9 N -0.348 5.348 10 C 0.081 3.919 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.160 4.160 14 C 0.047 3.953 15 H 0.065 0.935 16 N -0.337 5.337 17 C -0.459 4.459 18 H 0.086 0.914 19 C -0.278 4.278 20 N -0.597 5.597 21 Si 0.942 3.058 22 H -0.216 1.216 23 H -0.224 1.224 24 H -0.193 1.193 25 C 0.031 3.969 26 C -0.160 4.160 27 C -0.098 4.098 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.176 0.824 32 H 0.173 0.827 33 H 0.149 0.851 34 H 0.243 0.757 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.017 0.983 43 H 0.036 0.964 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.265 6.491 11.642 18.805 hybrid contribution -0.423 0.572 0.722 1.013 sum -13.688 7.063 12.364 19.751 Atomic orbital electron populations 1.20856 0.88697 1.04024 1.03319 1.20240 0.97951 0.92259 0.99505 1.21663 0.94279 0.98549 0.96526 1.21457 0.94819 0.98305 0.99431 1.21514 1.00454 0.91974 0.97941 1.19936 0.94837 0.92484 1.07985 1.18663 0.81946 0.89469 0.75417 1.90711 1.68981 1.33621 1.51341 1.45751 1.05821 1.09081 1.74182 1.21755 0.90520 0.84071 0.95579 1.22468 0.98080 0.98836 0.94748 1.22303 0.92516 1.02911 0.96956 1.22731 0.98454 0.98324 0.96535 1.22032 0.90193 0.97021 0.86023 0.93544 1.44785 1.02351 1.82998 1.03572 1.20028 0.82659 1.49264 0.93980 0.91417 1.27035 1.07640 0.99582 0.93524 1.70867 1.13633 1.36752 1.38436 0.82814 0.71934 0.75775 0.75285 1.21643 1.22358 1.19338 1.21369 0.87291 0.95279 0.92952 1.23050 0.97919 0.99321 0.95724 1.21228 0.92360 0.99137 0.97118 0.90303 0.91296 0.89297 0.82371 0.82677 0.85117 0.75702 0.91244 0.91812 0.89737 0.90263 0.92620 0.91701 0.93464 0.98291 0.96354 0.90295 0.91641 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.24 0.71 -0.70 16 2 C -0.10 -1.87 5.87 -19.90 -0.12 -1.98 16 3 C -0.09 -1.45 9.69 22.33 0.22 -1.24 16 4 C -0.12 -2.14 10.03 22.23 0.22 -1.92 16 5 C -0.10 -2.28 9.54 22.52 0.21 -2.06 16 6 C -0.15 -4.15 5.87 -20.09 -0.12 -4.27 16 7 C 0.56 18.58 6.99 86.79 0.61 19.19 16 8 O -0.57 -21.89 14.29 -3.87 -0.06 -21.95 16 9 N -0.70 -22.91 5.23 -416.06 -2.17 -25.08 16 10 C 0.17 6.03 0.77 5.76 0.00 6.03 16 11 C -0.10 -3.17 5.34 31.78 0.17 -3.00 16 12 C -0.11 -2.94 6.84 31.61 0.22 -2.72 16 13 C -0.12 -4.18 6.22 31.80 0.20 -3.98 16 14 C 0.15 6.13 3.61 46.24 0.17 6.30 16 15 H 0.05 1.85 7.97 -2.39 -0.02 1.83 16 16 N -0.61 -30.71 2.97 -663.20 -1.97 -32.68 16 17 C -0.33 -18.41 9.76 84.03 0.82 -17.59 16 18 H 0.07 3.69 7.96 -2.91 -0.02 3.67 16 19 C -0.08 -4.76 5.09 84.86 0.43 -4.33 16 20 N -0.95 -59.44 12.81 21.65 0.28 -59.17 16 21 Si 1.12 51.79 30.00 68.60 2.06 53.85 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 C 0.16 7.85 5.21 86.94 0.45 8.30 16 26 C -0.12 -4.99 5.83 31.98 0.19 -4.80 16 27 C -0.08 -2.00 9.24 22.53 0.21 -1.79 16 28 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.07 0.87 8.08 -2.39 -0.02 0.85 16 30 H 0.09 0.74 8.08 -2.39 -0.02 0.72 16 31 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.13 2.73 6.41 -2.91 -0.02 2.71 16 34 H 0.41 12.09 6.52 -92.71 -0.60 11.48 16 35 H 0.07 2.19 7.41 -2.38 -0.02 2.18 16 36 H 0.06 1.95 7.48 -2.39 -0.02 1.93 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 2.14 8.09 -2.39 -0.02 2.12 16 40 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.25 16.15 5.83 -92.71 -0.54 15.61 16 42 H 0.00 -0.03 6.86 -2.39 -0.02 -0.05 16 43 H 0.02 1.02 7.70 -2.39 -0.02 1.00 16 44 H 0.08 3.15 7.60 -2.39 -0.02 3.13 16 45 H 0.06 2.76 6.84 -2.39 -0.02 2.75 16 46 H 0.12 3.28 7.65 -2.91 -0.02 3.25 16 Total: -1.00 -71.87 361.67 3.34 -68.53 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.61 Total: 27.06 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 4.59 Total: -10.56 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -3.86 Total: -116.92 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.06 Total: -21.95 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.06 Total: 53.85 kcal Total: -71.87 3.34 -68.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989928597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.963 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds