Wall clock time and date at job start Tue Mar 31 2020 10:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38357 * 119.85565 * 2 1 4 4 C 1.37950 * 120.14426 * 180.02562 * 3 2 1 5 5 C 1.39572 * 119.85637 * 359.97438 * 4 3 2 6 6 C 1.47847 * 120.14849 * 179.97438 * 5 4 3 7 7 O 1.21555 * 119.99894 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00480 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00524 * 179.97438 * 8 6 5 10 10 C 1.53578 * 112.24159 * 297.65020 * 9 8 6 11 11 C 1.54231 * 106.67270 * 238.23484 * 10 9 8 12 12 C 1.54754 * 104.15874 * 335.06365 * 11 10 9 13 13 C 1.55118 * 112.65491 * 176.69442 * 9 8 6 14 14 H 1.08996 * 111.79783 * 23.26486 * 13 9 8 15 15 N 1.46986 * 107.08981 * 260.47239 * 13 9 8 16 16 C 1.36929 * 125.57872 * 181.83943 * 15 13 9 17 17 H 1.08004 * 120.00341 * 359.97438 * 16 15 13 18 18 C 1.38815 * 120.00031 * 179.71466 * 16 15 13 19 19 N 1.31617 * 119.99916 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99958 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46793 * 120.00365 * 20 18 16 23 23 H 1.48500 * 109.47000 * 240.00457 * 20 18 16 24 24 C 1.47366 * 108.83964 * 1.57629 * 15 13 9 25 25 C 1.54872 * 104.82493 * 335.58156 * 24 15 13 26 26 C 1.39576 * 119.70926 * 0.25545 * 5 4 3 27 27 C 1.37959 * 119.85495 * 359.51275 * 26 5 4 28 28 H 1.08993 * 109.47256 * 89.99576 * 1 2 3 29 29 H 1.09003 * 109.46661 * 209.99943 * 1 2 3 30 30 H 1.09003 * 109.46675 * 329.99782 * 1 2 3 31 31 H 1.08003 * 119.92480 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.07542 * 179.97438 * 4 3 2 33 33 H 0.97001 * 119.99803 * 359.97438 * 8 6 5 34 34 H 1.09001 * 110.01961 * 357.54158 * 10 9 8 35 35 H 1.09000 * 110.02058 * 118.88698 * 10 9 8 36 36 H 1.09005 * 110.48692 * 93.72857 * 11 10 9 37 37 H 1.08994 * 110.49240 * 216.25739 * 11 10 9 38 38 H 1.08997 * 110.66770 * 156.23473 * 12 11 10 39 39 H 1.09000 * 110.66767 * 279.20767 * 12 11 10 40 40 H 0.97000 * 120.00284 * 179.97438 * 19 18 16 41 41 H 1.08996 * 110.36704 * 94.41397 * 24 15 13 42 42 H 1.08996 * 110.36949 * 216.74129 * 24 15 13 43 43 H 1.08995 * 110.97045 * 155.18891 * 25 24 15 44 44 H 1.08997 * 110.96312 * 278.94924 * 25 24 15 45 45 H 1.08005 * 120.07454 * 179.72445 * 26 5 4 46 46 H 1.07997 * 119.92900 * 180.22897 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5753 1.2069 -0.0005 5 6 4.2762 -0.0001 -0.0005 6 6 5.7547 -0.0002 -0.0017 7 8 6.3625 1.0525 -0.0031 8 7 6.4286 -1.1673 -0.0022 9 6 7.8935 -1.1674 -0.0039 10 6 8.4734 -0.5080 -1.2639 11 6 9.3600 -1.5675 -1.9496 12 6 9.7738 -2.5167 -0.7996 13 6 8.4910 -2.5965 0.0783 14 1 7.7885 -3.3500 -0.2776 15 7 8.8736 -2.8249 1.4790 16 6 9.4730 -3.9552 1.9670 17 1 9.7026 -4.7748 1.3022 18 6 9.7905 -4.0454 3.3153 19 7 9.5149 -3.0448 4.1247 20 14 10.6088 -5.5871 3.9810 21 1 10.8106 -6.5573 2.8751 22 1 11.9233 -5.2330 4.5742 23 1 9.7435 -6.1963 5.0228 24 6 8.5123 -1.6357 2.2709 25 6 8.4837 -0.4726 1.2487 26 6 3.5753 -1.2070 -0.0054 27 6 2.1957 -1.2001 0.0000 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6522 2.1332 0.0004 32 1 4.1118 2.1442 -0.0010 33 1 5.9436 -2.0073 -0.0014 34 1 7.6669 -0.2070 -1.9324 35 1 9.0730 0.3597 -0.9887 36 1 8.7915 -2.1092 -2.7057 37 1 10.2377 -1.0999 -2.3957 38 1 10.0350 -3.5010 -1.1882 39 1 10.6041 -2.0954 -0.2329 40 1 9.7364 -3.1080 5.0670 41 1 7.5299 -1.7663 2.7246 42 1 9.2636 -1.4482 3.0380 43 1 7.8331 0.3319 1.5914 44 1 9.4895 -0.1018 1.0516 45 1 4.1117 -2.1444 -0.0099 46 1 1.6522 -2.1333 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992441614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:55 Heat of formation + Delta-G solvation = 11.729685 kcal Electronic energy + Delta-G solvation = -26642.974110 eV Core-core repulsion = 23111.593168 eV Total energy + Delta-G solvation = -3531.380942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.42577 -39.22786 -37.69891 -34.26727 -33.62406 -32.81057 -31.44487 -31.00047 -29.72776 -27.61628 -26.70584 -25.81004 -23.83223 -22.77094 -22.68686 -20.90945 -19.96873 -19.64692 -18.78619 -17.64500 -17.00127 -15.88716 -15.51466 -15.24117 -14.96969 -14.73305 -14.67391 -14.09313 -13.89886 -13.72828 -13.62903 -13.49689 -13.01747 -12.78929 -12.48180 -12.19528 -12.09463 -11.77059 -11.72473 -11.63134 -11.17225 -11.10784 -10.97450 -10.85315 -10.66108 -10.51748 -10.13548 -10.05686 -9.93895 -9.73948 -9.62284 -9.34889 -9.11280 -8.84983 -8.65337 -8.48479 -6.85140 -5.64106 -3.07494 0.80149 1.26041 2.98177 3.38573 3.41319 3.44924 3.47063 3.87161 4.47396 4.58281 4.62096 4.77544 4.88290 4.99731 5.12236 5.17728 5.23935 5.31647 5.33334 5.49356 5.52336 5.54823 5.66318 5.79055 5.86037 5.87738 5.88566 6.01675 6.08448 6.15495 6.18372 6.27378 6.30975 6.36615 6.37564 6.43994 6.55935 6.61966 6.76844 6.80443 6.82182 7.00926 7.14637 7.56688 7.65553 7.82857 7.89890 8.37306 8.51489 9.21851 9.82844 10.47154 11.38343 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.003701 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.530592 B = 7563.133473 C = 8515.062724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.068 4.068 3 C -0.131 4.131 4 C -0.058 4.058 5 C -0.133 4.133 6 C 0.556 3.444 7 O -0.536 6.536 8 N -0.699 5.699 9 C 0.160 3.840 10 C -0.111 4.111 11 C -0.124 4.124 12 C -0.129 4.129 13 C 0.163 3.837 14 H 0.046 0.954 15 N -0.595 5.595 16 C -0.220 4.220 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.919 5.919 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.152 3.848 25 C -0.142 4.142 26 C -0.081 4.081 27 C -0.129 4.129 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.397 0.603 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.251 0.749 41 H 0.009 0.991 42 H 0.108 0.892 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.127 0.873 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.237 5.534 -10.913 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.068 4.068 3 C -0.149 4.149 4 C -0.077 4.077 5 C -0.136 4.136 6 C 0.343 3.657 7 O -0.414 6.414 8 N -0.349 5.349 9 C 0.073 3.927 10 C -0.150 4.150 11 C -0.162 4.162 12 C -0.169 4.169 13 C 0.054 3.946 14 H 0.063 0.937 15 N -0.319 5.319 16 C -0.348 4.348 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.568 5.568 20 Si 0.743 3.257 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.028 3.972 25 C -0.182 4.182 26 C -0.100 4.100 27 C -0.147 4.147 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.233 0.767 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.125 0.875 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.145 0.855 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.704 6.173 -10.674 18.435 hybrid contribution 0.107 -1.288 0.436 1.365 sum -13.597 4.885 -10.238 17.707 Atomic orbital electron populations 1.20847 0.91034 1.03027 1.02467 1.20124 0.96240 0.93229 0.97250 1.21008 0.93878 0.97719 1.02336 1.21266 0.93753 0.97858 0.94798 1.20080 0.93361 0.94360 1.05837 1.18190 0.86721 0.84139 0.76611 1.90741 1.69660 1.31120 1.49877 1.45824 1.07034 1.08035 1.74012 1.21671 0.77810 0.97188 0.95984 1.22272 0.98832 0.98089 0.95770 1.22350 0.98843 0.97152 0.97867 1.23060 0.99614 0.98376 0.95888 1.21921 0.93513 0.91477 0.87647 0.93661 1.44515 1.69935 1.16030 1.01419 1.19080 1.30858 0.92714 0.92182 0.90461 1.24789 1.01594 0.98138 0.96083 1.69820 1.52860 1.30232 1.03860 0.86029 0.78791 0.82126 0.78720 1.20559 1.21795 1.21848 1.21970 0.99625 0.82546 0.93072 1.23340 0.99690 0.99268 0.95873 1.21367 0.94508 0.97287 0.96831 1.20978 0.93878 0.97786 1.02051 0.90936 0.91311 0.91355 0.85557 0.84665 0.76730 0.92367 0.91129 0.92377 0.92217 0.92373 0.90746 0.93814 0.97296 0.87479 0.91317 0.91394 0.85484 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.07 -0.65 5.89 -104.53 -0.62 -1.27 16 3 C -0.13 -1.35 9.68 -39.64 -0.38 -1.73 16 4 C -0.06 -0.73 9.60 -39.19 -0.38 -1.11 16 5 C -0.13 -1.86 5.87 -104.97 -0.62 -2.47 16 6 C 0.56 9.30 6.97 -12.33 -0.09 9.22 16 7 O -0.54 -10.39 14.16 5.32 0.08 -10.31 16 8 N -0.70 -11.51 5.18 -46.30 -0.24 -11.75 16 9 C 0.16 2.93 0.75 -129.39 -0.10 2.83 16 10 C -0.11 -1.84 5.30 -25.79 -0.14 -1.97 16 11 C -0.12 -1.87 6.84 -25.16 -0.17 -2.04 16 12 C -0.13 -2.34 6.29 -24.40 -0.15 -2.49 16 13 C 0.16 3.26 3.69 -65.14 -0.24 3.01 16 14 H 0.05 0.89 7.97 -51.93 -0.41 0.47 16 15 N -0.60 -14.67 3.06 -160.62 -0.49 -15.16 16 16 C -0.22 -5.93 10.04 -15.06 -0.15 -6.08 16 17 H 0.08 2.02 7.83 -52.48 -0.41 1.60 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -26.66 10.07 55.49 0.56 -26.10 16 20 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C 0.15 3.77 5.90 -2.58 -0.02 3.75 16 25 C -0.14 -2.99 5.70 -24.73 -0.14 -3.13 16 26 C -0.08 -0.96 9.54 -39.18 -0.37 -1.33 16 27 C -0.13 -1.31 9.68 -39.64 -0.38 -1.69 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 32 H 0.14 1.71 7.65 -52.48 -0.40 1.31 16 33 H 0.40 5.81 6.53 -40.82 -0.27 5.54 16 34 H 0.06 0.95 7.61 -51.93 -0.39 0.55 16 35 H 0.07 1.21 7.38 -51.93 -0.38 0.83 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.49 8.11 -51.93 -0.42 1.07 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.11 3.00 5.83 -51.93 -0.30 2.69 16 43 H 0.07 1.48 6.53 -51.93 -0.34 1.14 16 44 H 0.07 1.42 7.63 -51.93 -0.40 1.02 16 45 H 0.13 1.33 6.41 -52.48 -0.34 0.99 16 46 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -31.14 361.37 -10.35 -41.49 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.00 Total: 6.87 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -3.68 Total: -7.30 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.17 Total: -53.01 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.14 -10.35 -41.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992441614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.221 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds