Wall clock time and date at job start Tue Mar 31 2020 10:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38357 * 119.85565 * 2 1 4 4 C 1.37950 * 120.14426 * 180.02562 * 3 2 1 5 5 C 1.39572 * 119.85637 * 359.97438 * 4 3 2 6 6 C 1.47847 * 120.14849 * 179.97438 * 5 4 3 7 7 O 1.21555 * 119.99894 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00480 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00524 * 179.97438 * 8 6 5 10 10 C 1.53578 * 112.24159 * 297.65020 * 9 8 6 11 11 C 1.54231 * 106.67270 * 238.23484 * 10 9 8 12 12 C 1.54754 * 104.15874 * 335.06365 * 11 10 9 13 13 C 1.55118 * 112.65491 * 176.69442 * 9 8 6 14 14 H 1.08996 * 111.79783 * 23.26486 * 13 9 8 15 15 N 1.46986 * 107.08981 * 260.47239 * 13 9 8 16 16 C 1.36929 * 125.57872 * 181.83943 * 15 13 9 17 17 H 1.08004 * 120.00341 * 359.97438 * 16 15 13 18 18 C 1.38815 * 120.00031 * 179.71466 * 16 15 13 19 19 N 1.31617 * 119.99916 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99958 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46793 * 120.00365 * 20 18 16 23 23 H 1.48500 * 109.47000 * 240.00457 * 20 18 16 24 24 C 1.47366 * 108.83964 * 1.57629 * 15 13 9 25 25 C 1.54872 * 104.82493 * 335.58156 * 24 15 13 26 26 C 1.39576 * 119.70926 * 0.25545 * 5 4 3 27 27 C 1.37959 * 119.85495 * 359.51275 * 26 5 4 28 28 H 1.08993 * 109.47256 * 89.99576 * 1 2 3 29 29 H 1.09003 * 109.46661 * 209.99943 * 1 2 3 30 30 H 1.09003 * 109.46675 * 329.99782 * 1 2 3 31 31 H 1.08003 * 119.92480 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.07542 * 179.97438 * 4 3 2 33 33 H 0.97001 * 119.99803 * 359.97438 * 8 6 5 34 34 H 1.09001 * 110.01961 * 357.54158 * 10 9 8 35 35 H 1.09000 * 110.02058 * 118.88698 * 10 9 8 36 36 H 1.09005 * 110.48692 * 93.72857 * 11 10 9 37 37 H 1.08994 * 110.49240 * 216.25739 * 11 10 9 38 38 H 1.08997 * 110.66770 * 156.23473 * 12 11 10 39 39 H 1.09000 * 110.66767 * 279.20767 * 12 11 10 40 40 H 0.97000 * 120.00284 * 179.97438 * 19 18 16 41 41 H 1.08996 * 110.36704 * 94.41397 * 24 15 13 42 42 H 1.08996 * 110.36949 * 216.74129 * 24 15 13 43 43 H 1.08995 * 110.97045 * 155.18891 * 25 24 15 44 44 H 1.08997 * 110.96312 * 278.94924 * 25 24 15 45 45 H 1.08005 * 120.07454 * 179.72445 * 26 5 4 46 46 H 1.07997 * 119.92900 * 180.22897 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5753 1.2069 -0.0005 5 6 4.2762 -0.0001 -0.0005 6 6 5.7547 -0.0002 -0.0017 7 8 6.3625 1.0525 -0.0031 8 7 6.4286 -1.1673 -0.0022 9 6 7.8935 -1.1674 -0.0039 10 6 8.4734 -0.5080 -1.2639 11 6 9.3600 -1.5675 -1.9496 12 6 9.7738 -2.5167 -0.7996 13 6 8.4910 -2.5965 0.0783 14 1 7.7885 -3.3500 -0.2776 15 7 8.8736 -2.8249 1.4790 16 6 9.4730 -3.9552 1.9670 17 1 9.7026 -4.7748 1.3022 18 6 9.7905 -4.0454 3.3153 19 7 9.5149 -3.0448 4.1247 20 14 10.6088 -5.5871 3.9810 21 1 10.8106 -6.5573 2.8751 22 1 11.9233 -5.2330 4.5742 23 1 9.7435 -6.1963 5.0228 24 6 8.5123 -1.6357 2.2709 25 6 8.4837 -0.4726 1.2487 26 6 3.5753 -1.2070 -0.0054 27 6 2.1957 -1.2001 0.0000 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6522 2.1332 0.0004 32 1 4.1118 2.1442 -0.0010 33 1 5.9436 -2.0073 -0.0014 34 1 7.6669 -0.2070 -1.9324 35 1 9.0730 0.3597 -0.9887 36 1 8.7915 -2.1092 -2.7057 37 1 10.2377 -1.0999 -2.3957 38 1 10.0350 -3.5010 -1.1882 39 1 10.6041 -2.0954 -0.2329 40 1 9.7364 -3.1080 5.0670 41 1 7.5299 -1.7663 2.7246 42 1 9.2636 -1.4482 3.0380 43 1 7.8331 0.3319 1.5914 44 1 9.4895 -0.1018 1.0516 45 1 4.1117 -2.1444 -0.0099 46 1 1.6522 -2.1333 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992441614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:54 Heat of formation + Delta-G solvation = -5.603681 kcal Electronic energy + Delta-G solvation = -26643.725741 eV Core-core repulsion = 23111.593168 eV Total energy + Delta-G solvation = -3532.132573 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.76999 -40.37519 -39.00333 -36.06953 -34.93280 -33.77652 -33.25686 -31.95558 -31.38677 -28.58368 -28.42595 -27.19060 -25.74286 -23.80838 -23.59931 -22.34717 -21.54917 -20.99426 -20.22752 -18.90626 -18.89217 -17.30026 -16.86509 -16.55906 -16.17525 -16.14750 -15.73032 -15.66748 -15.11799 -15.03238 -14.61064 -14.55046 -14.48274 -14.28486 -13.87296 -13.53379 -13.22385 -13.01358 -12.95873 -12.84513 -12.77187 -12.68125 -12.53166 -12.31100 -11.98562 -11.94723 -11.90272 -11.72237 -11.60346 -11.49016 -11.26576 -10.81148 -10.73888 -10.04736 -9.96549 -9.62373 -8.87670 -7.73847 -5.19165 -0.14223 0.41006 1.48015 1.48737 1.58899 1.86077 2.12322 2.50980 2.87855 3.34329 3.35861 3.62712 3.71865 3.84111 3.93963 3.94920 4.00519 4.04465 4.33860 4.37595 4.40096 4.43730 4.46441 4.56691 4.63616 4.76359 4.78612 4.81825 4.87074 4.88281 4.94995 5.07305 5.08454 5.15691 5.21278 5.24055 5.30208 5.33990 5.40760 5.47346 5.50599 5.59378 5.63635 5.67355 5.82320 5.96185 6.29841 6.55110 7.11279 7.21555 7.79592 8.44074 9.27818 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.003701 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.530592 B = 7563.133473 C = 8515.062724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.062 4.062 3 C -0.132 4.132 4 C -0.072 4.072 5 C -0.161 4.161 6 C 0.555 3.445 7 O -0.570 6.570 8 N -0.697 5.697 9 C 0.168 3.832 10 C -0.105 4.105 11 C -0.108 4.108 12 C -0.124 4.124 13 C 0.155 3.845 14 H 0.059 0.941 15 N -0.610 5.610 16 C -0.223 4.223 17 H 0.087 0.913 18 C -0.071 4.071 19 N -0.952 5.952 20 Si 0.978 3.022 21 H -0.263 1.263 22 H -0.296 1.296 23 H -0.296 1.296 24 C 0.164 3.836 25 C -0.131 4.131 26 C -0.085 4.085 27 C -0.132 4.132 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.125 0.875 33 H 0.406 0.594 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.244 0.756 41 H -0.020 1.020 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.135 0.865 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.132 4.475 -13.138 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.062 4.062 3 C -0.150 4.150 4 C -0.091 4.091 5 C -0.164 4.164 6 C 0.344 3.656 7 O -0.451 6.451 8 N -0.348 5.348 9 C 0.081 3.919 10 C -0.144 4.144 11 C -0.146 4.146 12 C -0.164 4.164 13 C 0.048 3.952 14 H 0.076 0.924 15 N -0.334 5.334 16 C -0.352 4.352 17 H 0.105 0.895 18 C -0.263 4.263 19 N -0.602 5.602 20 Si 0.807 3.193 21 H -0.187 1.187 22 H -0.223 1.223 23 H -0.223 1.223 24 C 0.039 3.961 25 C -0.170 4.170 26 C -0.104 4.104 27 C -0.149 4.149 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.169 0.831 32 H 0.143 0.857 33 H 0.243 0.757 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.054 0.946 41 H -0.002 1.002 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.153 0.847 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.618 5.094 -12.951 20.919 hybrid contribution 0.579 -0.931 1.130 1.575 sum -15.039 4.163 -11.820 19.576 Atomic orbital electron populations 1.20931 0.88469 1.04171 1.03693 1.20567 0.98085 0.92635 0.94908 1.21298 0.92868 0.99351 1.01475 1.21340 0.95001 0.97111 0.95634 1.19947 0.91550 0.95882 1.08989 1.18668 0.88036 0.83445 0.75460 1.90709 1.70668 1.32161 1.51561 1.45760 1.06248 1.08694 1.74053 1.21518 0.79003 0.95869 0.95470 1.22208 0.99116 0.98205 0.94864 1.22292 0.99492 0.95894 0.96961 1.22923 0.97495 0.99678 0.96308 1.22185 0.94927 0.92558 0.85538 0.92373 1.44694 1.69887 1.15414 1.03427 1.19464 1.29884 0.93432 0.92434 0.89505 1.25617 1.02973 1.01040 0.96623 1.70079 1.54438 1.32137 1.03596 0.85001 0.77139 0.79044 0.78109 1.18693 1.22350 1.22331 1.21602 0.96732 0.84433 0.93373 1.23139 0.99745 0.97656 0.96459 1.21517 0.95506 0.96740 0.96651 1.21331 0.93217 0.99283 1.01111 0.89473 0.90217 0.90265 0.83090 0.85678 0.75668 0.91701 0.91954 0.89926 0.90193 0.91295 0.93191 0.94639 1.00195 0.91051 0.92246 0.91557 0.84688 0.82923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 10.01 71.24 0.71 -0.39 16 2 C -0.06 -1.01 5.89 -19.80 -0.12 -1.13 16 3 C -0.13 -2.47 9.68 22.23 0.22 -2.26 16 4 C -0.07 -1.81 9.60 22.52 0.22 -1.59 16 5 C -0.16 -4.48 5.87 -20.09 -0.12 -4.60 16 6 C 0.55 18.90 6.97 86.79 0.60 19.50 16 7 O -0.57 -22.81 14.16 -3.89 -0.06 -22.86 16 8 N -0.70 -23.00 5.18 -418.66 -2.17 -25.17 16 9 C 0.17 6.17 0.75 5.18 0.00 6.17 16 10 C -0.10 -3.35 5.30 31.21 0.17 -3.19 16 11 C -0.11 -2.96 6.84 31.61 0.22 -2.75 16 12 C -0.12 -4.30 6.29 32.10 0.20 -4.10 16 13 C 0.15 6.10 3.69 46.54 0.17 6.27 16 14 H 0.06 2.17 7.97 -2.39 -0.02 2.16 16 15 N -0.61 -30.66 3.06 -662.07 -2.03 -32.68 16 16 C -0.22 -12.12 10.04 84.04 0.84 -11.27 16 17 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 18 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 19 N -0.95 -57.53 10.07 21.65 0.22 -57.31 16 20 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 24 C 0.16 8.53 5.90 86.85 0.51 9.04 16 25 C -0.13 -5.70 5.70 31.89 0.18 -5.52 16 26 C -0.09 -1.92 9.54 22.53 0.21 -1.71 16 27 C -0.13 -2.34 9.68 22.23 0.22 -2.12 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 30 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 31 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.13 3.30 7.65 -2.91 -0.02 3.28 16 33 H 0.41 11.73 6.53 -92.71 -0.61 11.12 16 34 H 0.06 2.01 7.61 -2.39 -0.02 1.99 16 35 H 0.06 2.10 7.38 -2.39 -0.02 2.08 16 36 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 39 H 0.05 1.98 8.11 -2.39 -0.02 1.96 16 40 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 41 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 42 H 0.07 4.26 5.83 -2.39 -0.01 4.24 16 43 H 0.06 2.69 6.53 -2.39 -0.02 2.68 16 44 H 0.07 2.88 7.63 -2.39 -0.02 2.86 16 45 H 0.14 2.68 6.41 -2.91 -0.02 2.66 16 46 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -70.13 361.37 3.08 -67.06 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.38 Total: 26.59 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 4.71 Total: -3.15 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -3.98 Total: -115.16 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.06 Total: -22.86 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -70.13 3.08 -67.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992441614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.452 kcal (2) G-P(sol) polarization free energy of solvation -70.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds