Wall clock time and date at job start Tue Mar 31 2020 11:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 110.38746 * 2 1 4 4 C 1.54391 * 110.33968 * 237.77461 * 2 1 3 5 5 N 1.48145 * 104.61802 * 264.99363 * 4 2 1 6 6 C 1.34777 * 127.83747 * 140.41908 * 5 4 2 7 7 O 1.21275 * 120.00317 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99803 * 180.02562 * 6 5 4 9 9 F 1.39907 * 109.54437 * 55.00063 * 8 6 5 10 10 C 1.53178 * 109.54568 * 294.82521 * 8 6 5 11 11 C 1.53103 * 109.15829 * 183.24315 * 10 8 6 12 12 O 1.42906 * 109.49130 * 57.47088 * 11 10 8 13 13 C 1.42902 * 114.09446 * 298.89209 * 12 11 10 14 14 C 1.53094 * 109.41661 * 61.15700 * 13 12 11 15 15 C 1.48316 * 104.39257 * 320.47574 * 5 4 2 16 16 C 1.54288 * 110.34734 * 122.23849 * 2 1 3 17 17 H 1.09003 * 110.33470 * 359.89124 * 16 2 1 18 18 N 1.46494 * 110.33844 * 237.74260 * 16 2 1 19 19 C 1.36945 * 119.99612 * 156.47438 * 18 16 2 20 20 H 1.07999 * 120.00077 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99637 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00227 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99854 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46819 * 59.99973 * 23 21 19 25 25 H 1.48494 * 109.47285 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47086 * 300.00269 * 23 21 19 27 27 H 1.09001 * 109.47137 * 297.75952 * 1 2 3 28 28 H 1.08994 * 109.47598 * 57.76309 * 1 2 3 29 29 H 1.09009 * 109.47352 * 177.76903 * 1 2 3 30 30 H 1.09007 * 109.46717 * 182.23371 * 3 2 1 31 31 H 1.08993 * 109.47305 * 302.23345 * 3 2 1 32 32 H 1.08995 * 109.46641 * 62.23832 * 3 2 1 33 33 H 1.09000 * 110.41215 * 23.78051 * 4 2 1 34 34 H 1.09002 * 110.40787 * 146.20704 * 4 2 1 35 35 H 1.09003 * 109.52217 * 303.05655 * 10 8 6 36 36 H 1.09001 * 109.52249 * 63.24800 * 10 8 6 37 37 H 1.09001 * 109.40827 * 297.48892 * 11 10 8 38 38 H 1.08996 * 109.48478 * 177.49940 * 11 10 8 39 39 H 1.08992 * 109.48207 * 301.16903 * 13 12 11 40 40 H 1.09005 * 109.47791 * 181.13549 * 13 12 11 41 41 H 1.09000 * 109.52101 * 182.48225 * 14 13 12 42 42 H 1.08995 * 109.57766 * 62.32538 * 14 13 12 43 43 H 1.09006 * 110.37713 * 280.73323 * 15 5 4 44 44 H 1.09000 * 110.50876 * 158.25303 * 15 5 4 45 45 H 0.96995 * 120.00290 * 336.74329 * 18 16 2 46 46 H 0.97005 * 120.00046 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 6 2.0666 -0.7720 -1.2246 5 7 2.3138 -2.1438 -0.7229 6 6 2.0773 -3.3104 -1.3550 7 8 1.6053 -3.3101 -2.4721 8 6 2.3983 -4.6154 -0.6730 9 9 1.7492 -4.6684 0.5652 10 6 3.9116 -4.7254 -0.4634 11 6 4.2354 -6.0878 0.1556 12 8 3.7433 -7.1265 -0.6936 13 6 2.3274 -7.1012 -0.8857 14 6 1.9273 -5.7806 -1.5487 15 6 2.8795 -1.9439 0.6335 16 6 2.0664 -0.7717 1.2236 17 1 1.2398 -1.1491 1.8256 18 7 2.9308 0.0922 2.0314 19 6 3.1249 -0.1824 3.3590 20 1 2.6403 -1.0355 3.8104 21 6 3.9444 0.6358 4.1243 22 7 4.5345 1.6758 3.5742 23 14 4.2085 0.2618 5.9353 24 1 4.8131 -1.0870 6.0791 25 1 5.1191 1.2770 6.5228 26 1 2.9038 0.2974 6.6435 27 1 -0.3633 0.4786 0.9094 28 1 -0.3634 0.5481 -0.8692 29 1 -0.3634 -1.0270 -0.0400 30 1 3.1522 1.4169 -0.0401 31 1 1.6758 1.9657 -0.8692 32 1 1.7408 1.9414 0.9094 33 1 1.3222 -0.7868 -2.0207 34 1 2.9948 -0.3240 -1.5795 35 1 4.4200 -4.6328 -1.4232 36 1 4.2455 -3.9316 0.2048 37 1 3.7610 -6.1630 1.1341 38 1 5.3149 -6.1896 0.2661 39 1 1.8281 -7.1897 0.0790 40 1 2.0326 -7.9331 -1.5255 41 1 0.8433 -5.7407 -1.6560 42 1 2.3934 -5.7093 -2.5314 43 1 3.9352 -1.6799 0.5693 44 1 2.7472 -2.8409 1.2384 45 1 3.3626 0.8608 1.6270 46 1 5.1069 2.2478 4.1092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995902860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:46 Heat of formation + Delta-G solvation = -109.702621 kcal Electronic energy + Delta-G solvation = -28534.648318 eV Core-core repulsion = 24567.232451 eV Total energy + Delta-G solvation = -3967.415867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.07525 -40.14442 -39.03445 -37.97446 -34.25206 -33.51465 -32.94250 -31.43277 -30.86032 -27.81280 -27.23974 -26.84515 -25.10720 -23.99477 -23.83436 -21.90266 -20.71443 -19.52741 -18.57951 -17.44290 -17.12683 -16.82833 -16.30870 -16.07578 -15.59133 -15.35285 -15.26042 -14.63219 -14.51101 -14.08611 -13.86665 -13.80484 -13.51932 -13.02067 -12.79392 -12.72424 -12.67196 -12.60915 -12.42221 -11.96611 -11.76574 -11.68747 -11.58103 -11.26748 -11.01782 -10.96005 -10.90144 -10.74522 -10.58472 -10.49714 -10.25260 -10.07685 -9.91719 -9.69595 -9.52425 -9.05618 -8.53957 -7.10222 -5.87998 -3.18041 2.45500 2.88567 3.37705 3.43315 3.43445 3.62413 4.07206 4.14422 4.28108 4.51090 4.54363 4.63025 4.88079 4.96712 5.04279 5.11951 5.15944 5.28213 5.35882 5.40284 5.44343 5.45949 5.59121 5.63442 5.70668 5.75180 5.76831 5.80381 5.92015 5.95664 5.98658 6.13119 6.20315 6.23757 6.27557 6.37624 6.47250 6.55736 6.78894 6.89303 6.91499 7.60889 7.63964 8.05065 8.30669 9.42716 9.96639 10.31948 11.34018 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.004666 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.458746 B = 5999.784181 C = 7485.147289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.130 4.130 4 C 0.115 3.885 5 N -0.605 5.605 6 C 0.519 3.481 7 O -0.539 6.539 8 C 0.113 3.887 9 F -0.188 7.188 10 C -0.179 4.179 11 C 0.063 3.937 12 O -0.381 6.381 13 C 0.060 3.940 14 C -0.158 4.158 15 C 0.067 3.933 16 C 0.177 3.823 17 H 0.064 0.936 18 N -0.715 5.715 19 C -0.249 4.249 20 H 0.070 0.930 21 C -0.007 4.007 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.391 0.609 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.944 -11.467 -9.588 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.188 4.188 4 C -0.007 4.007 5 N -0.337 5.337 6 C 0.305 3.695 7 O -0.417 6.417 8 C 0.092 3.908 9 F -0.168 7.168 10 C -0.217 4.217 11 C -0.014 4.014 12 O -0.299 6.299 13 C -0.017 4.017 14 C -0.196 4.196 15 C -0.058 4.058 16 C 0.065 3.935 17 H 0.082 0.918 18 N -0.358 5.358 19 C -0.379 4.379 20 H 0.088 0.912 21 C -0.203 4.203 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.229 0.771 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.080 -11.708 -10.075 15.976 hybrid contribution 0.180 0.388 1.191 1.265 sum -3.901 -11.320 -8.884 14.910 Atomic orbital electron populations 1.21789 0.94050 1.01261 1.01699 1.21760 0.95856 0.96289 0.95032 1.21684 1.01184 0.94053 1.01874 1.22515 1.00743 0.80567 0.96864 1.49051 1.60926 1.05116 1.18605 1.20233 0.78841 0.84291 0.86140 1.90691 1.45081 1.86778 1.19179 1.21096 0.93957 0.94641 0.81134 1.92899 1.82930 1.97234 1.43775 1.22894 0.92935 1.01013 1.04860 1.22578 1.00598 0.85144 0.93087 1.87940 1.21869 1.50940 1.69160 1.22623 0.81839 0.96801 1.00417 1.22570 1.03767 0.93206 1.00083 1.23947 0.99301 1.01887 0.80675 1.21094 0.92660 0.89387 0.90405 0.91828 1.42713 1.54936 1.30843 1.07293 1.19224 1.23735 1.09226 0.85762 0.91154 1.24725 0.99889 0.97519 0.98191 1.69638 1.35082 1.17421 1.35656 0.86287 0.77627 0.77271 0.85095 1.21194 1.21668 1.21188 0.92028 0.93006 0.93120 0.91941 0.93569 0.90778 0.90400 0.90950 0.88793 0.88246 0.92039 0.87730 0.92333 0.87951 0.89066 0.88348 0.90338 0.90288 0.77106 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.24 37.16 0.31 -1.57 16 2 C -0.09 -1.38 1.03 -153.11 -0.16 -1.53 16 3 C -0.13 -2.06 7.11 37.16 0.26 -1.80 16 4 C 0.12 1.74 6.14 -2.41 -0.01 1.73 16 5 N -0.61 -9.54 3.32 -169.17 -0.56 -10.10 16 6 C 0.52 8.24 6.96 -10.99 -0.08 8.16 16 7 O -0.54 -9.70 16.20 5.56 0.09 -9.61 16 8 C 0.11 1.52 0.73 -91.59 -0.07 1.45 16 9 F -0.19 -2.74 14.33 2.25 0.03 -2.70 16 10 C -0.18 -2.12 5.01 -26.59 -0.13 -2.25 16 11 C 0.06 0.67 6.72 37.21 0.25 0.92 16 12 O -0.38 -4.40 10.77 -35.23 -0.38 -4.78 16 13 C 0.06 0.60 6.72 37.21 0.25 0.85 16 14 C -0.16 -1.83 4.56 -26.59 -0.12 -1.95 16 15 C 0.07 1.13 5.08 -2.32 -0.01 1.12 16 16 C 0.18 3.28 3.33 -66.53 -0.22 3.06 16 17 H 0.06 1.24 7.67 -51.93 -0.40 0.85 16 18 N -0.71 -16.22 4.61 -52.07 -0.24 -16.46 16 19 C -0.25 -6.39 9.96 -15.06 -0.15 -6.54 16 20 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 22 N -0.93 -26.38 13.06 55.49 0.72 -25.65 16 23 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.06 1.05 6.95 -51.92 -0.36 0.69 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.33 7.74 -51.93 -0.40 0.93 16 33 H 0.08 1.16 7.60 -51.93 -0.39 0.77 16 34 H 0.07 1.05 7.83 -51.93 -0.41 0.65 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.10 1.22 6.07 -51.93 -0.32 0.91 16 37 H 0.06 0.66 7.93 -51.93 -0.41 0.25 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.58 7.93 -51.93 -0.41 0.16 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.10 1.16 7.96 -51.93 -0.41 0.74 16 43 H 0.08 1.39 8.02 -51.93 -0.42 0.97 16 44 H 0.08 1.32 5.69 -51.93 -0.30 1.02 16 45 H 0.39 9.29 5.04 -40.82 -0.21 9.09 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -29.40 357.96 -7.30 -36.70 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.36 Total: 9.53 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 0.02 Total: 1.37 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.08 Total: -52.22 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.29 Total: -14.38 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.03 Total: -2.70 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.40 -7.30 -36.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995902860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.998 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds