Wall clock time and date at job start Tue Mar 31 2020 11:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 110.38746 * 2 1 4 4 C 1.54391 * 110.33968 * 237.77461 * 2 1 3 5 5 N 1.48145 * 104.61802 * 264.99363 * 4 2 1 6 6 C 1.34777 * 127.83747 * 140.41908 * 5 4 2 7 7 O 1.21275 * 120.00317 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99803 * 180.02562 * 6 5 4 9 9 F 1.39907 * 109.54437 * 55.00063 * 8 6 5 10 10 C 1.53178 * 109.54568 * 294.82521 * 8 6 5 11 11 C 1.53103 * 109.15829 * 183.24315 * 10 8 6 12 12 O 1.42906 * 109.49130 * 57.47088 * 11 10 8 13 13 C 1.42902 * 114.09446 * 298.89209 * 12 11 10 14 14 C 1.53094 * 109.41661 * 61.15700 * 13 12 11 15 15 C 1.48316 * 104.39257 * 320.47574 * 5 4 2 16 16 C 1.54288 * 110.34734 * 122.23849 * 2 1 3 17 17 H 1.09003 * 110.33470 * 359.89124 * 16 2 1 18 18 N 1.46494 * 110.33844 * 237.74260 * 16 2 1 19 19 C 1.36945 * 119.99612 * 156.47438 * 18 16 2 20 20 H 1.07999 * 120.00077 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99637 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00227 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99854 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46819 * 59.99973 * 23 21 19 25 25 H 1.48494 * 109.47285 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47086 * 300.00269 * 23 21 19 27 27 H 1.09001 * 109.47137 * 297.75952 * 1 2 3 28 28 H 1.08994 * 109.47598 * 57.76309 * 1 2 3 29 29 H 1.09009 * 109.47352 * 177.76903 * 1 2 3 30 30 H 1.09007 * 109.46717 * 182.23371 * 3 2 1 31 31 H 1.08993 * 109.47305 * 302.23345 * 3 2 1 32 32 H 1.08995 * 109.46641 * 62.23832 * 3 2 1 33 33 H 1.09000 * 110.41215 * 23.78051 * 4 2 1 34 34 H 1.09002 * 110.40787 * 146.20704 * 4 2 1 35 35 H 1.09003 * 109.52217 * 303.05655 * 10 8 6 36 36 H 1.09001 * 109.52249 * 63.24800 * 10 8 6 37 37 H 1.09001 * 109.40827 * 297.48892 * 11 10 8 38 38 H 1.08996 * 109.48478 * 177.49940 * 11 10 8 39 39 H 1.08992 * 109.48207 * 301.16903 * 13 12 11 40 40 H 1.09005 * 109.47791 * 181.13549 * 13 12 11 41 41 H 1.09000 * 109.52101 * 182.48225 * 14 13 12 42 42 H 1.08995 * 109.57766 * 62.32538 * 14 13 12 43 43 H 1.09006 * 110.37713 * 280.73323 * 15 5 4 44 44 H 1.09000 * 110.50876 * 158.25303 * 15 5 4 45 45 H 0.96995 * 120.00290 * 336.74329 * 18 16 2 46 46 H 0.97005 * 120.00046 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 6 2.0666 -0.7720 -1.2246 5 7 2.3138 -2.1438 -0.7229 6 6 2.0773 -3.3104 -1.3550 7 8 1.6053 -3.3101 -2.4721 8 6 2.3983 -4.6154 -0.6730 9 9 1.7492 -4.6684 0.5652 10 6 3.9116 -4.7254 -0.4634 11 6 4.2354 -6.0878 0.1556 12 8 3.7433 -7.1265 -0.6936 13 6 2.3274 -7.1012 -0.8857 14 6 1.9273 -5.7806 -1.5487 15 6 2.8795 -1.9439 0.6335 16 6 2.0664 -0.7717 1.2236 17 1 1.2398 -1.1491 1.8256 18 7 2.9308 0.0922 2.0314 19 6 3.1249 -0.1824 3.3590 20 1 2.6403 -1.0355 3.8104 21 6 3.9444 0.6358 4.1243 22 7 4.5345 1.6758 3.5742 23 14 4.2085 0.2618 5.9353 24 1 4.8131 -1.0870 6.0791 25 1 5.1191 1.2770 6.5228 26 1 2.9038 0.2974 6.6435 27 1 -0.3633 0.4786 0.9094 28 1 -0.3634 0.5481 -0.8692 29 1 -0.3634 -1.0270 -0.0400 30 1 3.1522 1.4169 -0.0401 31 1 1.6758 1.9657 -0.8692 32 1 1.7408 1.9414 0.9094 33 1 1.3222 -0.7868 -2.0207 34 1 2.9948 -0.3240 -1.5795 35 1 4.4200 -4.6328 -1.4232 36 1 4.2455 -3.9316 0.2048 37 1 3.7610 -6.1630 1.1341 38 1 5.3149 -6.1896 0.2661 39 1 1.8281 -7.1897 0.0790 40 1 2.0326 -7.9331 -1.5255 41 1 0.8433 -5.7407 -1.6560 42 1 2.3934 -5.7093 -2.5314 43 1 3.9352 -1.6799 0.5693 44 1 2.7472 -2.8409 1.2384 45 1 3.3626 0.8608 1.6270 46 1 5.1069 2.2478 4.1092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995902860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:45 Heat of formation + Delta-G solvation = -127.611759 kcal Electronic energy + Delta-G solvation = -28535.424916 eV Core-core repulsion = 24567.232451 eV Total energy + Delta-G solvation = -3968.192465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.19680 -41.43787 -40.07011 -39.21393 -35.92083 -34.85443 -34.07301 -32.67245 -32.30451 -29.32704 -28.41257 -28.21097 -26.19400 -25.69849 -24.81437 -23.36343 -21.77210 -20.70566 -19.99821 -19.20473 -18.42760 -17.90647 -17.40037 -17.04153 -16.93965 -16.57521 -16.28192 -16.14721 -15.71794 -15.51028 -15.37475 -15.16485 -14.85779 -14.42190 -14.06233 -13.87720 -13.69707 -13.66128 -13.47958 -13.29327 -13.20240 -13.07985 -12.80609 -12.72380 -12.54231 -12.49905 -12.12362 -12.08457 -11.98367 -11.77962 -11.69624 -11.47864 -11.35643 -11.09495 -10.93466 -10.58126 -9.90459 -9.00417 -7.92377 -5.20803 1.19060 1.51195 1.51849 1.57893 1.65277 2.57824 2.79221 2.96049 3.14370 3.23774 3.39160 3.51495 3.61988 3.72003 3.75951 3.86530 4.06075 4.12195 4.21859 4.29501 4.35918 4.39953 4.48189 4.51748 4.55248 4.58448 4.68974 4.70709 4.79418 4.82462 4.85345 4.88702 4.91020 4.97767 5.03111 5.07660 5.12183 5.28194 5.40005 5.49290 5.57839 6.09370 6.29121 6.32866 6.77032 7.38267 8.09939 8.36029 9.30118 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.004666 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.458746 B = 5999.784181 C = 7485.147289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.081 4.081 3 C -0.122 4.122 4 C 0.116 3.884 5 N -0.604 5.604 6 C 0.517 3.483 7 O -0.560 6.560 8 C 0.110 3.890 9 F -0.195 7.195 10 C -0.175 4.175 11 C 0.064 3.936 12 O -0.390 6.390 13 C 0.061 3.939 14 C -0.154 4.154 15 C 0.083 3.917 16 C 0.170 3.830 17 H 0.053 0.947 18 N -0.723 5.723 19 C -0.243 4.243 20 H 0.073 0.927 21 C -0.063 4.063 22 N -0.964 5.964 23 Si 0.964 3.036 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.282 1.282 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.123 0.877 39 H 0.061 0.939 40 H 0.127 0.873 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.385 0.615 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.397 -12.855 -10.190 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.083 4.083 3 C -0.179 4.179 4 C -0.006 4.006 5 N -0.336 5.336 6 C 0.304 3.696 7 O -0.439 6.439 8 C 0.089 3.911 9 F -0.176 7.176 10 C -0.213 4.213 11 C -0.013 4.013 12 O -0.308 6.308 13 C -0.016 4.016 14 C -0.192 4.192 15 C -0.042 4.042 16 C 0.059 3.941 17 H 0.071 0.929 18 N -0.365 5.365 19 C -0.375 4.375 20 H 0.091 0.909 21 C -0.256 4.256 22 N -0.614 5.614 23 Si 0.794 3.206 24 H -0.205 1.205 25 H -0.224 1.224 26 H -0.208 1.208 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.141 0.859 39 H 0.079 0.921 40 H 0.145 0.855 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.222 0.778 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.563 -13.136 -10.694 17.542 hybrid contribution 0.247 0.798 1.307 1.551 sum -4.316 -12.338 -9.387 16.092 Atomic orbital electron populations 1.21742 0.92703 1.01366 1.02439 1.21702 0.96850 0.95889 0.93822 1.21574 1.00288 0.94157 1.01921 1.22548 1.01306 0.80163 0.96539 1.49049 1.60823 1.05625 1.18074 1.20703 0.78092 0.84891 0.85962 1.90677 1.45950 1.87146 1.20119 1.21240 0.95002 0.93939 0.80924 1.92883 1.83199 1.97193 1.44293 1.22889 0.91686 1.01705 1.05069 1.22653 1.01762 0.84180 0.92702 1.87936 1.22634 1.51025 1.69255 1.22755 0.81213 0.96658 1.00934 1.22583 1.03795 0.93198 0.99665 1.23553 0.98387 1.01006 0.81240 1.21238 0.91940 0.89807 0.91081 0.92873 1.42801 1.55523 1.31366 1.06844 1.19551 1.22374 1.08520 0.87062 0.90867 1.25393 1.00636 0.97902 1.01701 1.69777 1.36344 1.18599 1.36666 0.85361 0.77304 0.76961 0.81007 1.20452 1.22442 1.20801 0.92694 0.90758 0.93424 0.93323 0.90640 0.93234 0.89619 0.90277 0.88350 0.88947 0.92152 0.85888 0.92104 0.85484 0.88974 0.88546 0.91141 0.90108 0.77844 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.24 71.98 0.59 -2.80 16 2 C -0.08 -2.47 1.03 -51.27 -0.05 -2.52 16 3 C -0.12 -3.77 7.11 71.98 0.51 -3.26 16 4 C 0.12 3.35 6.14 86.54 0.53 3.88 16 5 N -0.60 -18.42 3.32 -807.51 -2.68 -21.09 16 6 C 0.52 15.79 6.96 87.66 0.61 16.40 16 7 O -0.56 -19.40 16.20 -3.01 -0.05 -19.45 16 8 C 0.11 2.82 0.73 -11.42 -0.01 2.81 16 9 F -0.20 -5.46 14.33 44.97 0.64 -4.82 16 10 C -0.18 -3.91 5.01 30.69 0.15 -3.76 16 11 C 0.06 1.24 6.72 72.02 0.48 1.72 16 12 O -0.39 -8.14 10.77 -148.98 -1.60 -9.74 16 13 C 0.06 1.08 6.72 72.01 0.48 1.57 16 14 C -0.15 -3.31 4.56 30.69 0.14 -3.17 16 15 C 0.08 2.76 5.08 86.50 0.44 3.20 16 16 C 0.17 6.26 3.33 45.90 0.15 6.42 16 17 H 0.05 2.07 7.67 -2.39 -0.02 2.05 16 18 N -0.72 -33.07 4.61 -318.66 -1.47 -34.54 16 19 C -0.24 -12.55 9.96 84.03 0.84 -11.71 16 20 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 21 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 22 N -0.96 -55.53 13.06 21.65 0.28 -55.24 16 23 Si 0.96 44.00 29.55 68.60 2.03 46.03 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.05 1.31 8.14 -2.38 -0.02 1.30 16 30 H 0.05 1.64 6.95 -2.38 -0.02 1.62 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.78 7.74 -2.39 -0.02 1.76 16 33 H 0.09 2.37 7.60 -2.39 -0.02 2.36 16 34 H 0.08 2.19 7.83 -2.39 -0.02 2.17 16 35 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.09 2.18 6.07 -2.39 -0.01 2.17 16 37 H 0.06 1.19 7.93 -2.39 -0.02 1.17 16 38 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.06 1.07 7.93 -2.39 -0.02 1.05 16 40 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.10 2.11 7.96 -2.39 -0.02 2.10 16 43 H 0.07 2.48 8.02 -2.38 -0.02 2.46 16 44 H 0.08 2.65 5.69 -2.39 -0.01 2.63 16 45 H 0.38 18.61 5.04 -92.71 -0.47 18.14 16 46 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 Total: -1.00 -61.96 357.96 3.01 -58.95 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.51 Total: 34.08 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.34 Total: 5.82 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -3.87 Total: -110.88 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -1.65 Total: -29.19 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.64 Total: -4.82 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -61.96 3.01 -58.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995902860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.661 kcal (2) G-P(sol) polarization free energy of solvation -61.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds