Wall clock time and date at job start Tue Mar 31 2020 11:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.77822 * 2 1 4 4 C 1.54323 * 110.71699 * 123.24024 * 2 1 3 5 5 N 1.47026 * 107.26890 * 140.55622 * 4 2 1 6 6 C 1.34773 * 125.64547 * 181.01735 * 5 4 2 7 7 O 1.21283 * 120.00360 * 359.72907 * 6 5 4 8 8 C 1.50706 * 120.00081 * 180.02562 * 6 5 4 9 9 H 1.09001 * 112.82572 * 50.05487 * 8 6 5 10 10 C 1.53520 * 113.58631 * 181.17287 * 8 6 5 11 11 C 1.51608 * 87.24690 * 114.59484 * 10 8 6 12 12 C 1.38377 * 147.53159 * 179.97438 * 11 10 8 13 13 C 1.38091 * 120.32732 * 180.02562 * 12 11 10 14 14 C 1.38245 * 119.95805 * 359.97438 * 13 12 11 15 15 C 1.38096 * 119.95519 * 359.97438 * 14 13 12 16 16 C 1.38250 * 120.40337 * 0.07680 * 15 14 13 17 17 C 1.47422 * 108.70385 * 1.28845 * 5 4 2 18 18 C 1.55127 * 104.72145 * 335.54663 * 17 5 4 19 19 H 1.08997 * 111.19644 * 279.19709 * 18 17 5 20 20 N 1.46502 * 110.93974 * 155.29136 * 18 17 5 21 21 C 1.36932 * 120.00058 * 92.95838 * 20 18 17 22 22 H 1.08005 * 120.00075 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00320 * 179.97438 * 21 20 18 24 24 N 1.31616 * 120.00189 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99677 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.47244 * 89.99944 * 25 23 21 27 27 H 1.48506 * 109.46956 * 209.99485 * 25 23 21 28 28 H 1.48496 * 109.47321 * 329.99710 * 25 23 21 29 29 H 1.09000 * 109.47256 * 298.21641 * 1 2 3 30 30 H 1.09005 * 109.46739 * 58.21750 * 1 2 3 31 31 H 1.09007 * 109.47237 * 178.21350 * 1 2 3 32 32 H 1.09003 * 109.46569 * 181.78467 * 3 2 1 33 33 H 1.09000 * 109.47104 * 301.78078 * 3 2 1 34 34 H 1.09000 * 109.47136 * 61.78596 * 3 2 1 35 35 H 1.08999 * 109.88209 * 21.13932 * 4 2 1 36 36 H 1.08999 * 109.88036 * 259.97110 * 4 2 1 37 37 H 1.09005 * 113.58189 * 229.18022 * 10 8 6 38 38 H 1.08994 * 113.59094 * 359.92056 * 10 8 6 39 39 H 1.07996 * 119.83234 * 0.02562 * 12 11 10 40 40 H 1.08001 * 120.02095 * 179.97438 * 13 12 11 41 41 H 1.08002 * 120.02417 * 179.97438 * 14 13 12 42 42 H 1.07999 * 119.83366 * 180.02562 * 15 14 13 43 43 H 1.08994 * 110.37063 * 94.47949 * 17 5 4 44 44 H 1.09008 * 110.36295 * 216.80668 * 17 5 4 45 45 H 0.97002 * 119.99937 * 272.96146 * 20 18 17 46 46 H 0.97005 * 119.99923 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0759 -0.7912 1.2073 5 7 3.2445 -1.5508 0.7390 6 6 3.9922 -2.3836 1.4898 7 8 3.7224 -2.5523 2.6601 8 6 5.1678 -3.1001 0.8767 9 1 5.8340 -2.4308 0.3324 10 6 5.8975 -4.0317 1.8548 11 6 5.4426 -5.1847 0.9818 12 6 5.4353 -6.5509 0.7625 13 6 4.7757 -7.0783 -0.3300 14 6 4.1181 -6.2395 -1.2105 15 6 4.1213 -4.8753 -0.9959 16 6 4.7804 -4.3402 0.0952 17 6 3.4666 -1.2455 -0.6861 18 6 2.0790 -0.7955 -1.2138 19 1 1.4452 -1.6536 -1.4375 20 7 2.2206 0.0693 -2.3878 21 6 2.1858 -0.4719 -3.6451 22 1 2.0536 -1.5363 -3.7714 23 6 2.3195 0.3476 -4.7575 24 7 2.2865 -0.1727 -5.9660 25 14 2.5475 2.1887 -4.5391 26 1 3.9964 2.5003 -4.4443 27 1 1.9632 2.9014 -5.7036 28 1 1.8644 2.6282 -3.2960 29 1 -0.3634 0.4859 0.9055 30 1 -0.3633 0.5413 -0.8736 31 1 -0.3634 -1.0272 -0.0320 32 1 3.1621 1.4057 -0.0320 33 1 1.6957 1.9622 -0.8736 34 1 1.7474 1.9426 0.9056 35 1 1.3129 -1.4758 1.5775 36 1 2.3740 -0.1024 1.9977 37 1 6.9786 -3.8926 1.8652 38 1 5.4628 -4.0417 2.8543 39 1 5.9481 -7.2080 1.4493 40 1 4.7736 -8.1454 -0.4966 41 1 3.6022 -6.6508 -2.0655 42 1 3.6066 -4.2219 -1.6847 43 1 4.1947 -0.4415 -0.7928 44 1 3.8031 -2.1362 -1.2168 45 1 2.3391 1.0254 -2.2744 46 1 2.3803 0.4000 -6.7433 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996211511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:58 Heat of formation + Delta-G solvation = 45.084866 kcal Electronic energy + Delta-G solvation = -26757.047002 eV Core-core repulsion = 23227.112449 eV Total energy + Delta-G solvation = -3529.934553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01039 -39.60562 -37.96472 -35.17120 -34.31449 -33.27145 -31.19645 -30.81559 -28.12292 -27.85038 -27.21493 -26.71730 -24.55164 -23.75071 -22.09814 -21.40485 -20.53761 -19.06250 -18.64636 -17.72504 -17.16408 -16.77403 -15.98419 -15.42829 -15.21671 -14.77254 -14.49661 -14.17218 -13.96957 -13.83978 -13.35187 -13.12561 -13.08869 -13.02376 -12.71730 -12.45559 -12.20342 -12.15502 -12.05954 -11.88927 -11.71236 -11.45687 -11.39881 -11.07104 -11.01602 -10.65943 -10.61147 -10.51607 -10.37407 -10.03116 -9.87059 -9.65715 -9.08306 -8.84662 -8.57428 -8.43888 -7.43213 -5.89059 -3.26713 1.24063 1.38367 2.65816 3.09713 3.27395 3.30117 3.37483 3.74050 4.10299 4.33726 4.39172 4.47343 4.52430 4.86868 4.93611 4.99648 5.03109 5.07766 5.18490 5.34542 5.40264 5.49850 5.54779 5.61371 5.63244 5.66657 5.68194 5.78166 5.82226 5.85740 5.90679 5.96901 6.05420 6.08545 6.14717 6.17468 6.30291 6.36887 6.41727 6.45151 6.49930 6.53662 6.68056 6.70103 6.95071 7.67893 7.85423 8.24949 8.29699 9.06425 9.78487 9.96997 11.28595 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.004449 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.877675 B = 6292.666249 C = 7616.922887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.138 4.138 4 C 0.121 3.879 5 N -0.608 5.608 6 C 0.545 3.455 7 O -0.548 6.548 8 C -0.064 4.064 9 H 0.120 0.880 10 C -0.055 4.055 11 C -0.122 4.122 12 C -0.100 4.100 13 C -0.115 4.115 14 C -0.118 4.118 15 C -0.081 4.081 16 C -0.119 4.119 17 C 0.071 3.929 18 C 0.188 3.812 19 H 0.077 0.923 20 N -0.734 5.734 21 C -0.252 4.252 22 H 0.092 0.908 23 C 0.012 3.988 24 N -0.928 5.928 25 Si 0.879 3.121 26 H -0.283 1.283 27 H -0.289 1.289 28 H -0.276 1.276 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.367 0.633 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.287 -6.603 14.027 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 C -0.195 4.195 4 C -0.002 4.002 5 N -0.340 5.340 6 C 0.333 3.667 7 O -0.426 6.426 8 C -0.085 4.085 9 H 0.137 0.863 10 C -0.092 4.092 11 C -0.122 4.122 12 C -0.118 4.118 13 C -0.133 4.133 14 C -0.136 4.136 15 C -0.099 4.099 16 C -0.120 4.120 17 C -0.055 4.055 18 C 0.076 3.924 19 H 0.095 0.905 20 N -0.376 5.376 21 C -0.382 4.382 22 H 0.110 0.890 23 C -0.185 4.185 24 N -0.575 5.575 25 Si 0.709 3.291 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.202 1.202 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.202 0.798 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.147 -6.879 14.427 16.513 hybrid contribution 0.244 1.348 -0.282 1.399 sum 4.391 -5.531 14.145 15.810 Atomic orbital electron populations 1.21694 0.93141 1.02033 1.01831 1.21921 0.96360 0.95761 0.95248 1.21773 1.01022 0.94965 1.01765 1.22028 0.87464 0.94234 0.96442 1.48406 1.29626 1.43509 1.12471 1.19661 0.83021 0.78394 0.85630 1.90658 1.71106 1.64513 1.16340 1.21495 0.95892 0.94918 0.96205 0.86266 1.21793 1.00458 0.88337 0.98642 1.22264 0.98698 0.93623 0.97656 1.20243 1.00493 0.93042 0.98064 1.21012 0.97913 0.99685 0.94655 1.21030 0.99955 0.92828 0.99762 1.20469 0.98061 0.95167 0.96239 1.21678 0.99463 0.94957 0.95900 1.23534 1.02123 1.01034 0.78804 1.21338 0.91988 0.93372 0.85738 0.90499 1.42762 1.87807 1.05311 1.01721 1.19064 1.43193 0.94720 0.81212 0.89034 1.24648 1.01470 0.97295 0.95060 1.69689 1.56243 1.34510 0.97020 0.86663 0.78114 0.87215 0.77141 1.20925 1.21570 1.20209 0.93036 0.91481 0.92509 0.92476 0.91651 0.92742 0.91510 0.91722 0.88661 0.87453 0.86491 0.85691 0.85358 0.85683 0.91289 0.90633 0.79813 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.49 37.16 0.32 -1.42 16 2 C -0.09 -1.33 0.85 -152.67 -0.13 -1.46 16 3 C -0.14 -1.94 7.54 37.16 0.28 -1.66 16 4 C 0.12 1.74 6.04 -3.06 -0.02 1.72 16 5 N -0.61 -9.28 3.32 -170.38 -0.57 -9.85 16 6 C 0.54 8.58 7.38 -10.98 -0.08 8.50 16 7 O -0.55 -9.98 16.03 5.56 0.09 -9.89 16 8 C -0.06 -0.85 3.34 -92.22 -0.31 -1.16 16 9 H 0.12 1.41 8.12 -51.93 -0.42 0.99 16 10 C -0.06 -0.65 7.77 -27.18 -0.21 -0.86 16 11 C -0.12 -1.58 7.49 -103.79 -0.78 -2.36 16 12 C -0.10 -1.16 10.03 -39.58 -0.40 -1.55 16 13 C -0.11 -1.26 10.04 -39.63 -0.40 -1.66 16 14 C -0.12 -1.43 10.04 -39.63 -0.40 -1.83 16 15 C -0.08 -1.13 9.78 -39.63 -0.39 -1.52 16 16 C -0.12 -1.67 6.51 -103.83 -0.68 -2.35 16 17 C 0.07 1.13 6.05 -2.41 -0.01 1.12 16 18 C 0.19 3.28 2.97 -65.66 -0.19 3.08 16 19 H 0.08 1.42 7.99 -51.93 -0.41 1.01 16 20 N -0.73 -15.56 4.95 -51.23 -0.25 -15.82 16 21 C -0.25 -6.52 10.44 -15.06 -0.16 -6.68 16 22 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 23 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 24 N -0.93 -27.67 13.97 55.49 0.78 -26.90 16 25 Si 0.88 20.76 27.74 -169.99 -4.71 16.05 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.05 6.52 56.52 0.37 -5.68 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.06 0.81 7.42 -51.93 -0.39 0.43 16 33 H 0.06 1.01 6.75 -51.93 -0.35 0.66 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.96 7.82 -51.93 -0.41 0.56 16 36 H 0.06 0.90 7.84 -51.93 -0.41 0.49 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.11 1.35 7.04 -51.93 -0.37 0.98 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.13 1.78 7.21 -52.49 -0.38 1.41 16 43 H 0.07 1.11 7.69 -51.93 -0.40 0.71 16 44 H 0.08 1.22 6.14 -51.92 -0.32 0.90 16 45 H 0.37 7.68 3.31 -40.82 -0.14 7.54 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -30.76 365.59 -9.77 -40.53 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.96 Total: 10.23 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -3.65 Total: -9.87 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.05 Total: -52.56 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.71 Total: 16.05 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.76 -9.77 -40.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996211511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.616 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds