Wall clock time and date at job start Tue Mar 31 2020 11:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.77822 * 2 1 4 4 C 1.54323 * 110.71699 * 123.24024 * 2 1 3 5 5 N 1.47026 * 107.26890 * 140.55622 * 4 2 1 6 6 C 1.34773 * 125.64547 * 181.01735 * 5 4 2 7 7 O 1.21283 * 120.00360 * 359.72907 * 6 5 4 8 8 C 1.50706 * 120.00081 * 180.02562 * 6 5 4 9 9 H 1.09001 * 112.82572 * 50.05487 * 8 6 5 10 10 C 1.53520 * 113.58631 * 181.17287 * 8 6 5 11 11 C 1.51608 * 87.24690 * 114.59484 * 10 8 6 12 12 C 1.38377 * 147.53159 * 179.97438 * 11 10 8 13 13 C 1.38091 * 120.32732 * 180.02562 * 12 11 10 14 14 C 1.38245 * 119.95805 * 359.97438 * 13 12 11 15 15 C 1.38096 * 119.95519 * 359.97438 * 14 13 12 16 16 C 1.38250 * 120.40337 * 0.07680 * 15 14 13 17 17 C 1.47422 * 108.70385 * 1.28845 * 5 4 2 18 18 C 1.55127 * 104.72145 * 335.54663 * 17 5 4 19 19 H 1.08997 * 111.19644 * 279.19709 * 18 17 5 20 20 N 1.46502 * 110.93974 * 155.29136 * 18 17 5 21 21 C 1.36932 * 120.00058 * 92.95838 * 20 18 17 22 22 H 1.08005 * 120.00075 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00320 * 179.97438 * 21 20 18 24 24 N 1.31616 * 120.00189 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99677 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.47244 * 89.99944 * 25 23 21 27 27 H 1.48506 * 109.46956 * 209.99485 * 25 23 21 28 28 H 1.48496 * 109.47321 * 329.99710 * 25 23 21 29 29 H 1.09000 * 109.47256 * 298.21641 * 1 2 3 30 30 H 1.09005 * 109.46739 * 58.21750 * 1 2 3 31 31 H 1.09007 * 109.47237 * 178.21350 * 1 2 3 32 32 H 1.09003 * 109.46569 * 181.78467 * 3 2 1 33 33 H 1.09000 * 109.47104 * 301.78078 * 3 2 1 34 34 H 1.09000 * 109.47136 * 61.78596 * 3 2 1 35 35 H 1.08999 * 109.88209 * 21.13932 * 4 2 1 36 36 H 1.08999 * 109.88036 * 259.97110 * 4 2 1 37 37 H 1.09005 * 113.58189 * 229.18022 * 10 8 6 38 38 H 1.08994 * 113.59094 * 359.92056 * 10 8 6 39 39 H 1.07996 * 119.83234 * 0.02562 * 12 11 10 40 40 H 1.08001 * 120.02095 * 179.97438 * 13 12 11 41 41 H 1.08002 * 120.02417 * 179.97438 * 14 13 12 42 42 H 1.07999 * 119.83366 * 180.02562 * 15 14 13 43 43 H 1.08994 * 110.37063 * 94.47949 * 17 5 4 44 44 H 1.09008 * 110.36295 * 216.80668 * 17 5 4 45 45 H 0.97002 * 119.99937 * 272.96146 * 20 18 17 46 46 H 0.97005 * 119.99923 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0759 -0.7912 1.2073 5 7 3.2445 -1.5508 0.7390 6 6 3.9922 -2.3836 1.4898 7 8 3.7224 -2.5523 2.6601 8 6 5.1678 -3.1001 0.8767 9 1 5.8340 -2.4308 0.3324 10 6 5.8975 -4.0317 1.8548 11 6 5.4426 -5.1847 0.9818 12 6 5.4353 -6.5509 0.7625 13 6 4.7757 -7.0783 -0.3300 14 6 4.1181 -6.2395 -1.2105 15 6 4.1213 -4.8753 -0.9959 16 6 4.7804 -4.3402 0.0952 17 6 3.4666 -1.2455 -0.6861 18 6 2.0790 -0.7955 -1.2138 19 1 1.4452 -1.6536 -1.4375 20 7 2.2206 0.0693 -2.3878 21 6 2.1858 -0.4719 -3.6451 22 1 2.0536 -1.5363 -3.7714 23 6 2.3195 0.3476 -4.7575 24 7 2.2865 -0.1727 -5.9660 25 14 2.5475 2.1887 -4.5391 26 1 3.9964 2.5003 -4.4443 27 1 1.9632 2.9014 -5.7036 28 1 1.8644 2.6282 -3.2960 29 1 -0.3634 0.4859 0.9055 30 1 -0.3633 0.5413 -0.8736 31 1 -0.3634 -1.0272 -0.0320 32 1 3.1621 1.4057 -0.0320 33 1 1.6957 1.9622 -0.8736 34 1 1.7474 1.9426 0.9056 35 1 1.3129 -1.4758 1.5775 36 1 2.3740 -0.1024 1.9977 37 1 6.9786 -3.8926 1.8652 38 1 5.4628 -4.0417 2.8543 39 1 5.9481 -7.2080 1.4493 40 1 4.7736 -8.1454 -0.4966 41 1 3.6022 -6.6508 -2.0655 42 1 3.6066 -4.2219 -1.6847 43 1 4.1947 -0.4415 -0.7928 44 1 3.8031 -2.1362 -1.2168 45 1 2.3391 1.0254 -2.2744 46 1 2.3803 0.4000 -6.7433 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996211511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:57 Heat of formation + Delta-G solvation = 28.361718 kcal Electronic energy + Delta-G solvation = -26757.772172 eV Core-core repulsion = 23227.112449 eV Total energy + Delta-G solvation = -3530.659723 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.10540 -40.79474 -39.22924 -36.19389 -35.97932 -34.66101 -33.08628 -31.77476 -29.57068 -29.00243 -28.34010 -27.76570 -25.74143 -25.40305 -23.23110 -22.76312 -21.56696 -20.52747 -19.87256 -19.43630 -18.35295 -17.81429 -17.26215 -16.76404 -16.36664 -16.24945 -15.73210 -15.51786 -15.27720 -15.05232 -14.86285 -14.43018 -14.28176 -14.17621 -13.93574 -13.60492 -13.47950 -13.39634 -13.17246 -13.02815 -12.97622 -12.86472 -12.79810 -12.66229 -12.16832 -11.97628 -11.96997 -11.90770 -11.67968 -11.53330 -11.38884 -11.06849 -10.93880 -9.82281 -9.76174 -9.54924 -9.32205 -8.01018 -5.35887 0.27763 0.41315 1.38701 1.41392 1.43292 1.48683 1.88710 2.48938 2.77101 3.11303 3.24128 3.28216 3.40355 3.41244 3.60306 3.74153 3.75563 3.96643 4.13534 4.16332 4.20904 4.24126 4.31018 4.37840 4.59677 4.63860 4.66443 4.74552 4.77127 4.80053 4.82927 4.92171 4.92904 4.97693 5.00463 5.09718 5.11047 5.13413 5.25075 5.35683 5.44243 5.44625 5.55164 5.70791 5.78180 6.02600 6.22006 6.41007 6.99739 7.07964 7.81028 8.01464 9.19947 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.004449 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.877675 B = 6292.666249 C = 7616.922887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.137 4.137 4 C 0.122 3.878 5 N -0.607 5.607 6 C 0.543 3.457 7 O -0.573 6.573 8 C -0.067 4.067 9 H 0.132 0.868 10 C -0.044 4.044 11 C -0.132 4.132 12 C -0.104 4.104 13 C -0.110 4.110 14 C -0.128 4.128 15 C -0.104 4.104 16 C -0.145 4.145 17 C 0.084 3.916 18 C 0.179 3.821 19 H 0.060 0.940 20 N -0.733 5.733 21 C -0.230 4.230 22 H 0.059 0.941 23 C -0.055 4.055 24 N -0.980 5.980 25 Si 0.942 3.058 26 H -0.278 1.278 27 H -0.299 1.299 28 H -0.247 1.247 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.145 0.855 40 H 0.157 0.843 41 H 0.142 0.858 42 H 0.107 0.893 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.372 0.628 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.055 -6.250 16.418 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.082 4.082 3 C -0.194 4.194 4 C -0.001 4.001 5 N -0.339 5.339 6 C 0.333 3.667 7 O -0.453 6.453 8 C -0.088 4.088 9 H 0.150 0.850 10 C -0.081 4.081 11 C -0.132 4.132 12 C -0.121 4.121 13 C -0.128 4.128 14 C -0.146 4.146 15 C -0.123 4.123 16 C -0.145 4.145 17 C -0.041 4.041 18 C 0.068 3.932 19 H 0.078 0.922 20 N -0.376 5.376 21 C -0.361 4.361 22 H 0.077 0.923 23 C -0.247 4.247 24 N -0.630 5.630 25 Si 0.770 3.230 26 H -0.204 1.204 27 H -0.226 1.226 28 H -0.171 1.171 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.142 0.858 38 H 0.117 0.883 39 H 0.162 0.838 40 H 0.175 0.825 41 H 0.160 0.840 42 H 0.125 0.875 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.208 0.792 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.909 -6.527 16.885 18.756 hybrid contribution -0.034 1.077 -0.983 1.458 sum 4.874 -5.450 15.902 17.503 Atomic orbital electron populations 1.21688 0.92131 1.02132 1.02554 1.21863 0.97155 0.95933 0.93276 1.21781 1.00888 0.94186 1.02583 1.22090 0.87170 0.94334 0.96481 1.48417 1.29922 1.43607 1.11926 1.20073 0.83381 0.77981 0.85298 1.90639 1.71989 1.65305 1.17400 1.21597 0.95303 0.95078 0.96831 0.85049 1.21785 1.01896 0.87015 0.97416 1.22554 0.98684 0.94397 0.97557 1.20641 1.00093 0.92924 0.98482 1.21404 0.96501 1.01133 0.93749 1.21293 1.00286 0.92311 1.00675 1.20537 0.99093 0.96047 0.96588 1.21832 1.00471 0.95745 0.96496 1.23208 1.00886 1.00751 0.79280 1.21451 0.92837 0.93026 0.85836 0.92186 1.42641 1.87971 1.05895 1.01105 1.18991 1.40569 0.93352 0.83159 0.92279 1.25386 1.02512 1.02118 0.94657 1.69869 1.58986 1.36181 0.97992 0.85619 0.78305 0.81339 0.77782 1.20438 1.22612 1.17140 0.90317 0.92829 0.92690 0.92625 0.92883 0.89959 0.91479 0.90402 0.85779 0.88272 0.83753 0.82535 0.84047 0.87513 0.90905 0.91408 0.79202 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.49 71.98 0.61 -2.59 16 2 C -0.08 -2.22 0.85 -50.99 -0.04 -2.27 16 3 C -0.14 -3.48 7.54 71.98 0.54 -2.94 16 4 C 0.12 3.29 6.04 86.73 0.52 3.81 16 5 N -0.61 -18.05 3.32 -811.35 -2.70 -20.75 16 6 C 0.54 16.72 7.38 87.66 0.65 17.37 16 7 O -0.57 -20.38 16.03 -3.04 -0.05 -20.43 16 8 C -0.07 -1.74 3.34 -11.83 -0.04 -1.78 16 9 H 0.13 2.99 8.12 -2.39 -0.02 2.97 16 10 C -0.04 -0.96 7.77 30.30 0.24 -0.73 16 11 C -0.13 -3.22 7.49 -19.32 -0.14 -3.36 16 12 C -0.10 -2.15 10.03 22.27 0.22 -1.93 16 13 C -0.11 -2.20 10.04 22.24 0.22 -1.98 16 14 C -0.13 -3.06 10.04 22.24 0.22 -2.84 16 15 C -0.10 -3.00 9.78 22.24 0.22 -2.79 16 16 C -0.14 -4.05 6.51 -19.35 -0.13 -4.17 16 17 C 0.08 2.68 6.05 86.93 0.53 3.21 16 18 C 0.18 6.24 2.97 46.46 0.14 6.38 16 19 H 0.06 2.29 7.99 -2.39 -0.02 2.27 16 20 N -0.73 -30.92 4.95 -316.01 -1.56 -32.49 16 21 C -0.23 -12.18 10.44 84.03 0.88 -11.30 16 22 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 23 C -0.05 -3.06 5.50 84.86 0.47 -2.60 16 24 N -0.98 -60.48 13.97 21.65 0.30 -60.18 16 25 Si 0.94 42.84 27.74 68.60 1.90 44.74 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 27 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.25 -9.91 6.52 99.48 0.65 -9.27 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.05 1.38 8.13 -2.38 -0.02 1.36 16 32 H 0.05 1.43 7.42 -2.39 -0.02 1.41 16 33 H 0.05 1.49 6.75 -2.39 -0.02 1.48 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.83 7.82 -2.39 -0.02 1.81 16 36 H 0.08 1.95 7.84 -2.39 -0.02 1.93 16 37 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.10 2.35 7.04 -2.39 -0.02 2.34 16 39 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 42 H 0.11 3.32 7.21 -2.91 -0.02 3.30 16 43 H 0.07 2.29 7.69 -2.39 -0.02 2.27 16 44 H 0.07 2.27 6.14 -2.38 -0.01 2.25 16 45 H 0.37 15.01 3.31 -92.71 -0.31 14.70 16 46 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 Total: -1.00 -67.91 365.59 3.61 -64.30 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.61 Total: 35.30 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 5.10 Total: -10.50 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -3.96 Total: -113.41 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.05 Total: -20.43 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.90 Total: 44.74 kcal Total: -67.91 3.61 -64.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996211511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.659 kcal (2) G-P(sol) polarization free energy of solvation -67.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds