Wall clock time and date at job start Tue Mar 31 2020 11:29:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.52996 * 110.88672 * 2 1
4 4 C 1.55134 * 111.19206 * 236.07182 * 2 1 3
5 5 N 1.47423 * 104.72131 * 279.19081 * 4 2 1
6 6 C 1.34778 * 125.64619 * 155.81653 * 5 4 2
7 7 O 1.21278 * 120.00245 * 359.71823 * 6 5 4
8 8 C 1.50705 * 119.99772 * 179.71289 * 6 5 4
9 9 H 1.09006 * 112.54613 * 50.36458 * 8 6 5
10 10 C 1.52884 * 113.16541 * 180.22465 * 8 6 5
11 11 C 1.51429 * 84.72796 * 115.22543 * 10 8 6
12 12 C 1.38948 * 145.53204 * 179.97438 * 11 10 8
13 13 C 1.37980 * 120.32955 * 180.02562 * 12 11 10
14 14 C 1.38242 * 120.17259 * 359.77827 * 13 12 11
15 15 C 1.38173 * 119.74894 * 0.46552 * 14 13 12
16 16 C 1.38236 * 120.12558 * 359.51667 * 15 14 13
17 17 C 1.47020 * 108.70326 * 335.54990 * 5 4 2
18 18 C 1.54320 * 107.27086 * 1.28847 * 17 5 4
19 19 H 1.09008 * 110.72046 * 140.55280 * 18 17 5
20 20 N 1.46499 * 110.72161 * 263.82994 * 18 17 5
21 21 C 1.36943 * 119.99821 * 273.54412 * 20 18 17
22 22 H 1.07999 * 120.00067 * 0.02562 * 21 20 18
23 23 C 1.38814 * 120.00040 * 179.97438 * 21 20 18
24 24 N 1.31616 * 119.99786 * 180.02562 * 23 21 20
25 25 Si 1.86802 * 119.99877 * 0.02562 * 23 21 20
26 26 H 1.48505 * 109.47059 * 89.99786 * 25 23 21
27 27 H 1.48494 * 109.47006 * 209.99953 * 25 23 21
28 28 H 1.48494 * 109.47082 * 330.00246 * 25 23 21
29 29 H 1.09005 * 109.47335 * 296.11669 * 1 2 3
30 30 H 1.08995 * 109.47649 * 56.11754 * 1 2 3
31 31 H 1.09005 * 109.47195 * 176.11656 * 1 2 3
32 32 H 1.09002 * 109.47714 * 183.88245 * 3 2 1
33 33 H 1.09001 * 109.47546 * 303.87905 * 3 2 1
34 34 H 1.09006 * 109.47160 * 63.88705 * 3 2 1
35 35 H 1.09000 * 110.49665 * 160.34622 * 4 2 1
36 36 H 1.09002 * 110.33981 * 37.95078 * 4 2 1
37 37 H 1.08997 * 113.99001 * 229.16746 * 10 8 6
38 38 H 1.08994 * 113.99031 * 1.13340 * 10 8 6
39 39 H 1.08006 * 119.83590 * 359.97438 * 12 11 10
40 40 H 1.07995 * 119.90991 * 180.02562 * 13 12 11
41 41 H 1.07999 * 120.12296 * 180.25441 * 14 13 12
42 42 H 1.08002 * 119.93962 * 179.80231 * 15 14 13
43 43 H 1.09005 * 109.88243 * 120.70255 * 17 5 4
44 44 H 1.08995 * 109.88670 * 241.87200 * 17 5 4
45 45 H 0.96995 * 120.00188 * 93.55170 * 20 18 17
46 46 H 0.96999 * 119.99361 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0754 1.4294 0.0000
4 6 2.0907 -0.8073 -1.2002
5 7 2.0138 -2.2161 -0.7727
6 6 1.9470 -3.2834 -1.5931
7 8 1.9419 -3.1246 -2.7954
8 6 1.8788 -4.6740 -1.0163
9 1 1.1057 -4.7729 -0.2542
10 6 1.8133 -5.7657 -2.0846
11 6 3.1616 -6.1862 -1.5384
12 6 4.2122 -7.0886 -1.6506
13 6 5.3007 -6.9991 -0.8073
14 6 5.3555 -6.0066 0.1535
15 6 4.3113 -5.1096 0.2730
16 6 3.2205 -5.1981 -0.5716
17 6 2.0285 -2.2644 0.6967
18 6 2.0862 -0.8076 1.2024
19 1 1.4523 -0.6785 2.0798
20 7 3.4667 -0.4151 1.4962
21 6 4.0066 -0.6796 2.7265
22 1 3.4149 -1.1779 3.4801
23 6 5.3149 -0.3082 3.0048
24 7 5.8340 -0.5629 4.1871
25 14 6.3387 0.5530 1.7010
26 1 6.1587 2.0222 1.8210
27 1 7.7714 0.2126 1.8921
28 1 5.8997 0.1090 0.3538
29 1 -0.3634 0.4524 0.9228
30 1 -0.3634 0.5729 -0.8531
31 1 -0.3634 -1.0253 -0.0696
32 1 3.1629 1.4034 -0.0696
33 1 1.6697 1.9732 -0.8532
34 1 1.7823 1.9302 0.9228
35 1 3.1252 -0.5270 -1.3987
36 1 1.4762 -0.6456 -2.0858
37 1 1.0218 -6.4973 -1.9227
38 1 1.8448 -5.3880 -3.1066
39 1 4.1763 -7.8644 -2.4011
40 1 6.1136 -7.7038 -0.9008
41 1 6.2097 -5.9348 0.8104
42 1 4.3495 -4.3350 1.0246
43 1 1.1218 -2.7476 1.0608
44 1 2.9063 -2.8112 1.0409
45 1 3.9982 0.0322 0.8193
46 1 6.7480 -0.3030 4.3816
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000996211516.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:29:07
Heat of formation + Delta-G solvation = 47.470339 kcal
Electronic energy + Delta-G solvation = -27077.450534 eV
Core-core repulsion = 23547.619423 eV
Total energy + Delta-G solvation = -3529.831111 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.05802 -39.60099 -37.88978 -35.15487 -34.09474 -33.28992 -31.13832 -30.70938
-28.31711 -27.90841 -26.94549 -26.69149 -24.55452 -23.59444 -22.03351 -21.46754
-20.45660 -19.17013 -18.54768 -17.63974 -17.09971 -16.75146 -15.88142 -15.30992
-15.07011 -14.80625 -14.50626 -14.39861 -13.95461 -13.75283 -13.22164 -13.02525
-12.98459 -12.69069 -12.55631 -12.53354 -12.19501 -12.13794 -12.08858 -11.84415
-11.75266 -11.65718 -11.31400 -11.03507 -10.95328 -10.69202 -10.58417 -10.46395
-10.32394 -9.97162 -9.78330 -9.64930 -9.07247 -8.74340 -8.51150 -8.34267
-7.40967 -5.87730 -3.24515 1.33328 1.45248 2.74139 3.20100 3.30260
3.33438 3.39432 3.82284 4.15213 4.42796 4.48649 4.49646 4.54195
4.89939 4.94016 5.02400 5.10861 5.16621 5.19948 5.26135 5.45304
5.52211 5.54334 5.61575 5.71522 5.73116 5.78161 5.80875 5.90060
5.93088 5.96343 6.01413 6.06820 6.11038 6.16680 6.19854 6.24471
6.42549 6.44838 6.51900 6.58616 6.64640 6.66112 6.77084 7.03854
7.77162 7.87099 8.31000 8.32478 9.08336 9.81033 9.99712 11.29916
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.010891 B = 0.005700 C = 0.004158
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2570.371501 B = 4911.264136 C = 6732.675807
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.092 4.092
3 C -0.127 4.127
4 C 0.119 3.881
5 N -0.602 5.602
6 C 0.542 3.458
7 O -0.550 6.550
8 C -0.060 4.060
9 H 0.115 0.885
10 C -0.059 4.059
11 C -0.123 4.123
12 C -0.105 4.105
13 C -0.116 4.116
14 C -0.116 4.116
15 C -0.075 4.075
16 C -0.121 4.121
17 C 0.071 3.929
18 C 0.185 3.815
19 H 0.079 0.921
20 N -0.737 5.737
21 C -0.249 4.249
22 H 0.093 0.907
23 C 0.013 3.987
24 N -0.928 5.928
25 Si 0.876 3.124
26 H -0.282 1.282
27 H -0.290 1.290
28 H -0.278 1.278
29 H 0.060 0.940
30 H 0.054 0.946
31 H 0.054 0.946
32 H 0.058 0.942
33 H 0.049 0.951
34 H 0.065 0.935
35 H 0.064 0.936
36 H 0.072 0.928
37 H 0.097 0.903
38 H 0.109 0.891
39 H 0.116 0.884
40 H 0.124 0.876
41 H 0.129 0.871
42 H 0.130 0.870
43 H 0.058 0.942
44 H 0.081 0.919
45 H 0.364 0.636
46 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.090 -7.915 -9.894 15.594
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.093 4.093
3 C -0.185 4.185
4 C -0.004 4.004
5 N -0.334 5.334
6 C 0.330 3.670
7 O -0.429 6.429
8 C -0.081 4.081
9 H 0.132 0.868
10 C -0.096 4.096
11 C -0.123 4.123
12 C -0.123 4.123
13 C -0.134 4.134
14 C -0.134 4.134
15 C -0.093 4.093
16 C -0.121 4.121
17 C -0.055 4.055
18 C 0.073 3.927
19 H 0.097 0.903
20 N -0.379 5.379
21 C -0.379 4.379
22 H 0.110 0.890
23 C -0.184 4.184
24 N -0.575 5.575
25 Si 0.706 3.294
26 H -0.209 1.209
27 H -0.216 1.216
28 H -0.204 1.204
29 H 0.079 0.921
30 H 0.073 0.927
31 H 0.073 0.927
32 H 0.077 0.923
33 H 0.069 0.931
34 H 0.084 0.916
35 H 0.083 0.917
36 H 0.091 0.909
37 H 0.115 0.885
38 H 0.128 0.872
39 H 0.134 0.866
40 H 0.141 0.859
41 H 0.147 0.853
42 H 0.148 0.852
43 H 0.077 0.923
44 H 0.099 0.901
45 H 0.198 0.802
46 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -9.008 -7.954 -10.297 15.825
hybrid contribution 1.120 0.529 -0.639 1.394
sum -7.888 -7.425 -10.936 15.393
Atomic orbital electron populations
1.21658 0.93454 1.01693 1.01789 1.22085 0.95789 0.95831 0.95627
1.21598 1.01162 0.94038 1.01688 1.22322 1.00713 0.80185 0.97170
1.48375 1.71241 1.05843 1.07908 1.19732 0.76130 0.85144 0.85971
1.90650 1.51659 1.86015 1.14564 1.21249 0.95613 0.92554 0.98638
0.86767 1.21712 0.92920 0.95027 0.99924 1.22308 0.96283 0.96137
0.97563 1.20463 0.93099 0.98969 0.99770 1.20978 0.97803 0.98759
0.95858 1.21080 0.98392 0.95104 0.98855 1.20471 0.91599 0.98912
0.98330 1.21145 0.95488 0.97938 0.97547 1.23273 1.01391 1.02441
0.78396 1.21185 0.87650 0.89180 0.94659 0.90295 1.42811 1.09543
1.71168 1.14395 1.19028 0.96297 1.33189 0.89337 0.88964 1.24621
0.96887 1.00658 0.96222 1.69687 1.15291 1.51951 1.20596 0.86687
0.80538 0.80159 0.81972 1.20858 1.21645 1.20378 0.92057 0.92708
0.92675 0.92325 0.93147 0.91552 0.91744 0.90914 0.88495 0.87241
0.86630 0.85852 0.85269 0.85213 0.92334 0.90067 0.80193 0.92941
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.52 8.58 37.15 0.32 -1.20 16
2 C -0.09 -1.32 0.83 -152.25 -0.13 -1.45 16
3 C -0.13 -1.81 8.22 37.16 0.31 -1.50 16
4 C 0.12 1.87 5.82 -2.41 -0.01 1.85 16
5 N -0.60 -9.72 3.31 -170.38 -0.56 -10.29 16
6 C 0.54 8.99 7.35 -10.98 -0.08 8.91 16
7 O -0.55 -10.55 15.92 5.56 0.09 -10.46 16
8 C -0.06 -0.82 3.35 -96.60 -0.32 -1.15 16
9 H 0.11 1.33 8.12 -51.93 -0.42 0.91 16
10 C -0.06 -0.72 7.91 -27.58 -0.22 -0.94 16
11 C -0.12 -1.70 7.32 -107.60 -0.79 -2.48 16
12 C -0.10 -1.32 10.05 -39.41 -0.40 -1.72 16
13 C -0.12 -1.43 10.03 -39.67 -0.40 -1.83 16
14 C -0.12 -1.61 10.06 -39.60 -0.40 -2.01 16
15 C -0.08 -1.18 9.90 -39.61 -0.39 -1.57 16
16 C -0.12 -1.82 7.04 -104.55 -0.74 -2.56 16
17 C 0.07 1.13 5.89 -3.07 -0.02 1.11 16
18 C 0.18 3.16 2.86 -66.10 -0.19 2.97 16
19 H 0.08 1.35 8.03 -51.92 -0.42 0.93 16
20 N -0.74 -15.77 4.41 -51.65 -0.23 -16.00 16
21 C -0.25 -6.42 10.46 -15.06 -0.16 -6.58 16
22 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16
23 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16
24 N -0.93 -27.74 13.97 55.49 0.78 -26.96 16
25 Si 0.88 21.34 27.74 -169.99 -4.71 16.62 16
26 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16
27 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16
28 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16
29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16
31 H 0.05 0.65 7.91 -51.93 -0.41 0.24 16
32 H 0.06 0.94 6.38 -51.93 -0.33 0.61 16
33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
35 H 0.06 1.11 7.99 -51.93 -0.41 0.70 16
36 H 0.07 1.10 7.95 -51.93 -0.41 0.69 16
37 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16
38 H 0.11 1.44 7.02 -51.93 -0.36 1.08 16
39 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16
40 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16
41 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16
42 H 0.13 2.17 6.98 -52.49 -0.37 1.80 16
43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
44 H 0.08 1.48 6.80 -51.93 -0.35 1.13 16
45 H 0.36 7.92 3.96 -40.82 -0.16 7.76 16
46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
LS Contribution 367.77 15.07 5.54 5.54
Total: -1.00 -31.18 367.77 -9.86 -41.03
By element:
Atomic # 1 Polarization: 17.44 SS G_CDS: -7.05 Total: 10.39 kcal
Atomic # 6 Polarization: -6.17 SS G_CDS: -3.71 Total: -9.88 kcal
Atomic # 7 Polarization: -53.24 SS G_CDS: -0.02 Total: -53.25 kcal
Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal
Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.62 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -31.18 -9.86 -41.03 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000996211516.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.504 kcal
(2) G-P(sol) polarization free energy of solvation -31.175 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.328 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.470 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds