Wall clock time and date at job start Tue Mar 31 2020 11:29:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.52996 * 110.88672 * 2 1
4 4 C 1.55134 * 111.19206 * 236.07182 * 2 1 3
5 5 N 1.47423 * 104.72131 * 279.19081 * 4 2 1
6 6 C 1.34778 * 125.64619 * 155.81653 * 5 4 2
7 7 O 1.21278 * 120.00245 * 359.71823 * 6 5 4
8 8 C 1.50705 * 119.99772 * 179.71289 * 6 5 4
9 9 H 1.09006 * 112.54613 * 50.36458 * 8 6 5
10 10 C 1.52884 * 113.16541 * 180.22465 * 8 6 5
11 11 C 1.51429 * 84.72796 * 115.22543 * 10 8 6
12 12 C 1.38948 * 145.53204 * 179.97438 * 11 10 8
13 13 C 1.37980 * 120.32955 * 180.02562 * 12 11 10
14 14 C 1.38242 * 120.17259 * 359.77827 * 13 12 11
15 15 C 1.38173 * 119.74894 * 0.46552 * 14 13 12
16 16 C 1.38236 * 120.12558 * 359.51667 * 15 14 13
17 17 C 1.47020 * 108.70326 * 335.54990 * 5 4 2
18 18 C 1.54320 * 107.27086 * 1.28847 * 17 5 4
19 19 H 1.09008 * 110.72046 * 140.55280 * 18 17 5
20 20 N 1.46499 * 110.72161 * 263.82994 * 18 17 5
21 21 C 1.36943 * 119.99821 * 273.54412 * 20 18 17
22 22 H 1.07999 * 120.00067 * 0.02562 * 21 20 18
23 23 C 1.38814 * 120.00040 * 179.97438 * 21 20 18
24 24 N 1.31616 * 119.99786 * 180.02562 * 23 21 20
25 25 Si 1.86802 * 119.99877 * 0.02562 * 23 21 20
26 26 H 1.48505 * 109.47059 * 89.99786 * 25 23 21
27 27 H 1.48494 * 109.47006 * 209.99953 * 25 23 21
28 28 H 1.48494 * 109.47082 * 330.00246 * 25 23 21
29 29 H 1.09005 * 109.47335 * 296.11669 * 1 2 3
30 30 H 1.08995 * 109.47649 * 56.11754 * 1 2 3
31 31 H 1.09005 * 109.47195 * 176.11656 * 1 2 3
32 32 H 1.09002 * 109.47714 * 183.88245 * 3 2 1
33 33 H 1.09001 * 109.47546 * 303.87905 * 3 2 1
34 34 H 1.09006 * 109.47160 * 63.88705 * 3 2 1
35 35 H 1.09000 * 110.49665 * 160.34622 * 4 2 1
36 36 H 1.09002 * 110.33981 * 37.95078 * 4 2 1
37 37 H 1.08997 * 113.99001 * 229.16746 * 10 8 6
38 38 H 1.08994 * 113.99031 * 1.13340 * 10 8 6
39 39 H 1.08006 * 119.83590 * 359.97438 * 12 11 10
40 40 H 1.07995 * 119.90991 * 180.02562 * 13 12 11
41 41 H 1.07999 * 120.12296 * 180.25441 * 14 13 12
42 42 H 1.08002 * 119.93962 * 179.80231 * 15 14 13
43 43 H 1.09005 * 109.88243 * 120.70255 * 17 5 4
44 44 H 1.08995 * 109.88670 * 241.87200 * 17 5 4
45 45 H 0.96995 * 120.00188 * 93.55170 * 20 18 17
46 46 H 0.96999 * 119.99361 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0754 1.4294 0.0000
4 6 2.0907 -0.8073 -1.2002
5 7 2.0138 -2.2161 -0.7727
6 6 1.9470 -3.2834 -1.5931
7 8 1.9419 -3.1246 -2.7954
8 6 1.8788 -4.6740 -1.0163
9 1 1.1057 -4.7729 -0.2542
10 6 1.8133 -5.7657 -2.0846
11 6 3.1616 -6.1862 -1.5384
12 6 4.2122 -7.0886 -1.6506
13 6 5.3007 -6.9991 -0.8073
14 6 5.3555 -6.0066 0.1535
15 6 4.3113 -5.1096 0.2730
16 6 3.2205 -5.1981 -0.5716
17 6 2.0285 -2.2644 0.6967
18 6 2.0862 -0.8076 1.2024
19 1 1.4523 -0.6785 2.0798
20 7 3.4667 -0.4151 1.4962
21 6 4.0066 -0.6796 2.7265
22 1 3.4149 -1.1779 3.4801
23 6 5.3149 -0.3082 3.0048
24 7 5.8340 -0.5629 4.1871
25 14 6.3387 0.5530 1.7010
26 1 6.1587 2.0222 1.8210
27 1 7.7714 0.2126 1.8921
28 1 5.8997 0.1090 0.3538
29 1 -0.3634 0.4524 0.9228
30 1 -0.3634 0.5729 -0.8531
31 1 -0.3634 -1.0253 -0.0696
32 1 3.1629 1.4034 -0.0696
33 1 1.6697 1.9732 -0.8532
34 1 1.7823 1.9302 0.9228
35 1 3.1252 -0.5270 -1.3987
36 1 1.4762 -0.6456 -2.0858
37 1 1.0218 -6.4973 -1.9227
38 1 1.8448 -5.3880 -3.1066
39 1 4.1763 -7.8644 -2.4011
40 1 6.1136 -7.7038 -0.9008
41 1 6.2097 -5.9348 0.8104
42 1 4.3495 -4.3350 1.0246
43 1 1.1218 -2.7476 1.0608
44 1 2.9063 -2.8112 1.0409
45 1 3.9982 0.0322 0.8193
46 1 6.7480 -0.3030 4.3816
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000996211516.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:29:06
Heat of formation + Delta-G solvation = 30.353371 kcal
Electronic energy + Delta-G solvation = -27078.192781 eV
Core-core repulsion = 23547.619423 eV
Total energy + Delta-G solvation = -3530.573359 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.20243 -40.83689 -39.19673 -36.23645 -35.84558 -34.63596 -33.04318 -31.76069
-29.77740 -29.02270 -28.10814 -27.80882 -25.81205 -25.20352 -23.23917 -22.85640
-21.55280 -20.63304 -19.80420 -19.36793 -18.34604 -17.84711 -17.28223 -16.59242
-16.38490 -16.16661 -16.08119 -15.60069 -15.31692 -14.96306 -14.72207 -14.47844
-14.10753 -13.99914 -13.77901 -13.75913 -13.56508 -13.37676 -13.23135 -13.02998
-12.92120 -12.86081 -12.81386 -12.72106 -12.28751 -11.98598 -11.95913 -11.87371
-11.61771 -11.58307 -11.31732 -11.05996 -10.96930 -9.81974 -9.70144 -9.57699
-9.32840 -8.02536 -5.34507 0.27830 0.37875 1.33581 1.34759 1.40596
1.45938 1.95563 2.44983 2.75645 3.10009 3.27369 3.29234 3.42426
3.46428 3.51396 3.74727 3.77683 3.95775 4.13696 4.15072 4.21031
4.25043 4.41606 4.53823 4.56804 4.60935 4.64698 4.71902 4.78103
4.85699 4.88185 4.92306 4.96525 4.98309 5.05821 5.06527 5.11494
5.23561 5.28295 5.37073 5.42253 5.49186 5.54340 5.69385 5.79348
6.00948 6.21775 6.46854 7.01914 7.07337 7.83076 8.00430 9.18550
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.010891 B = 0.005700 C = 0.004158
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2570.371501 B = 4911.264136 C = 6732.675807
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.077 4.077
3 C -0.127 4.127
4 C 0.116 3.884
5 N -0.602 5.602
6 C 0.538 3.462
7 O -0.578 6.578
8 C -0.060 4.060
9 H 0.137 0.863
10 C -0.046 4.046
11 C -0.130 4.130
12 C -0.107 4.107
13 C -0.112 4.112
14 C -0.130 4.130
15 C -0.101 4.101
16 C -0.146 4.146
17 C 0.081 3.919
18 C 0.173 3.827
19 H 0.084 0.916
20 N -0.740 5.740
21 C -0.218 4.218
22 H 0.069 0.931
23 C -0.051 4.051
24 N -0.977 5.977
25 Si 0.934 3.066
26 H -0.275 1.275
27 H -0.301 1.301
28 H -0.267 1.267
29 H 0.071 0.929
30 H 0.072 0.928
31 H 0.056 0.944
32 H 0.036 0.964
33 H 0.077 0.923
34 H 0.064 0.936
35 H 0.044 0.956
36 H 0.082 0.918
37 H 0.132 0.868
38 H 0.100 0.900
39 H 0.146 0.854
40 H 0.155 0.845
41 H 0.136 0.864
42 H 0.103 0.897
43 H 0.088 0.912
44 H 0.055 0.945
45 H 0.363 0.637
46 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.875 -8.724 -11.946 18.360
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.079 4.079
3 C -0.185 4.185
4 C -0.007 4.007
5 N -0.333 5.333
6 C 0.328 3.672
7 O -0.459 6.459
8 C -0.080 4.080
9 H 0.154 0.846
10 C -0.082 4.082
11 C -0.130 4.130
12 C -0.124 4.124
13 C -0.129 4.129
14 C -0.148 4.148
15 C -0.119 4.119
16 C -0.146 4.146
17 C -0.044 4.044
18 C 0.064 3.936
19 H 0.101 0.899
20 N -0.382 5.382
21 C -0.349 4.349
22 H 0.087 0.913
23 C -0.244 4.244
24 N -0.628 5.628
25 Si 0.764 3.236
26 H -0.201 1.201
27 H -0.228 1.228
28 H -0.192 1.192
29 H 0.090 0.910
30 H 0.091 0.909
31 H 0.076 0.924
32 H 0.055 0.945
33 H 0.096 0.904
34 H 0.084 0.916
35 H 0.062 0.938
36 H 0.101 0.899
37 H 0.150 0.850
38 H 0.118 0.882
39 H 0.163 0.837
40 H 0.173 0.827
41 H 0.154 0.846
42 H 0.121 0.879
43 H 0.106 0.894
44 H 0.073 0.927
45 H 0.197 0.803
46 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -10.847 -8.760 -12.382 18.647
hybrid contribution 1.613 0.719 -0.010 1.766
sum -9.234 -8.041 -12.392 17.421
Atomic orbital electron populations
1.21633 0.90783 1.02372 1.03191 1.22049 0.97640 0.95216 0.92987
1.21607 0.99849 0.94152 1.02879 1.22365 0.99843 0.80283 0.98200
1.48448 1.70926 1.06163 1.07807 1.20243 0.75259 0.86101 0.85637
1.90629 1.52997 1.86577 1.15728 1.21385 0.95724 0.91188 0.99745
0.84564 1.21743 0.93084 0.94760 0.98648 1.22648 0.97308 0.95947
0.97126 1.20867 0.92415 0.99145 1.00014 1.21344 0.98613 0.98337
0.94654 1.21292 0.98223 0.95478 0.99790 1.20459 0.93194 0.99431
0.98834 1.21331 0.95967 0.99154 0.98192 1.23047 1.01655 1.01253
0.78490 1.21458 0.85445 0.90427 0.96277 0.89853 1.42816 1.11355
1.71256 1.12786 1.19010 0.95622 1.30137 0.90127 0.91291 1.25235
0.98377 1.02768 0.97972 1.69836 1.15479 1.54706 1.22795 0.85730
0.78330 0.79411 0.80172 1.20097 1.22781 1.19238 0.91017 0.90917
0.92446 0.94502 0.90433 0.91648 0.93806 0.89933 0.84979 0.88179
0.83663 0.82744 0.84589 0.87851 0.89418 0.92693 0.80261 0.93519
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.50 8.58 71.98 0.62 -1.88 16
2 C -0.08 -2.08 0.83 -50.72 -0.04 -2.12 16
3 C -0.13 -3.38 8.22 71.98 0.59 -2.78 16
4 C 0.12 3.50 5.82 86.93 0.51 4.01 16
5 N -0.60 -18.91 3.31 -811.35 -2.69 -21.59 16
6 C 0.54 17.31 7.35 87.66 0.64 17.96 16
7 O -0.58 -21.66 15.92 -3.02 -0.05 -21.71 16
8 C -0.06 -1.56 3.35 -14.67 -0.05 -1.61 16
9 H 0.14 2.87 8.12 -2.38 -0.02 2.85 16
10 C -0.05 -1.00 7.91 30.04 0.24 -0.76 16
11 C -0.13 -3.36 7.32 -21.79 -0.16 -3.52 16
12 C -0.11 -2.42 10.05 22.38 0.22 -2.19 16
13 C -0.11 -2.55 10.03 22.21 0.22 -2.32 16
14 C -0.13 -3.61 10.06 22.26 0.22 -3.39 16
15 C -0.10 -3.27 9.90 22.25 0.22 -3.05 16
16 C -0.15 -4.36 7.04 -19.82 -0.14 -4.50 16
17 C 0.08 2.54 5.89 86.73 0.51 3.05 16
18 C 0.17 5.79 2.86 46.18 0.13 5.92 16
19 H 0.08 2.75 8.03 -2.38 -0.02 2.73 16
20 N -0.74 -31.78 4.41 -317.32 -1.40 -33.18 16
21 C -0.22 -11.51 10.46 84.03 0.88 -10.63 16
22 H 0.07 3.93 8.06 -2.91 -0.02 3.90 16
23 C -0.05 -2.92 5.50 84.86 0.47 -2.45 16
24 N -0.98 -60.54 13.97 21.65 0.30 -60.24 16
25 Si 0.93 45.14 27.74 68.60 1.90 47.05 16
26 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16
27 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16
28 H -0.27 -12.20 6.52 99.48 0.65 -11.55 16
29 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16
30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
31 H 0.06 1.16 7.91 -2.38 -0.02 1.15 16
32 H 0.04 1.13 6.38 -2.39 -0.02 1.12 16
33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16
34 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16
35 H 0.04 1.50 7.99 -2.39 -0.02 1.48 16
36 H 0.08 2.35 7.95 -2.39 -0.02 2.33 16
37 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16
38 H 0.10 2.44 7.02 -2.39 -0.02 2.43 16
39 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16
40 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16
41 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16
42 H 0.10 3.77 6.98 -2.91 -0.02 3.75 16
43 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16
44 H 0.05 2.05 6.80 -2.39 -0.02 2.04 16
45 H 0.36 15.79 3.96 -92.71 -0.37 15.42 16
46 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16
Total: -1.00 -69.58 367.77 3.71 -65.87
By element:
Atomic # 1 Polarization: 33.51 SS G_CDS: 0.55 Total: 34.06 kcal
Atomic # 6 Polarization: -15.36 SS G_CDS: 5.09 Total: -10.27 kcal
Atomic # 7 Polarization: -111.22 SS G_CDS: -3.78 Total: -115.00 kcal
Atomic # 8 Polarization: -21.66 SS G_CDS: -0.05 Total: -21.71 kcal
Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.05 kcal
Total: -69.58 3.71 -65.87 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000996211516.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.227 kcal
(2) G-P(sol) polarization free energy of solvation -69.582 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.645 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.873 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.353 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds