Wall clock time and date at job start Tue Mar 31 2020 10:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38385 * 119.92971 * 2 1 4 4 C 1.38333 * 120.29147 * 180.02562 * 3 2 1 5 5 C 1.37976 * 120.14781 * 359.78331 * 4 3 2 6 6 C 1.50701 * 120.07541 * 180.25762 * 5 4 3 7 7 C 1.39553 * 119.85249 * 0.46903 * 5 4 3 8 8 C 1.47842 * 120.14605 * 179.78929 * 7 5 4 9 9 O 1.21549 * 119.99908 * 353.70723 * 8 7 5 10 10 N 1.34773 * 120.00129 * 173.71208 * 8 7 5 11 11 C 1.46508 * 120.00144 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47047 * 179.97438 * 11 10 8 13 13 C 1.29453 * 117.69625 * 95.00487 * 12 11 10 14 14 C 1.50318 * 123.65739 * 180.85492 * 13 12 11 15 15 N 1.47005 * 109.16327 * 349.02425 * 14 13 12 16 16 C 1.36939 * 121.37314 * 222.96326 * 15 14 13 17 17 H 1.08002 * 119.99720 * 153.72572 * 16 15 14 18 18 C 1.38809 * 120.00149 * 333.72999 * 16 15 14 19 19 N 1.31618 * 119.99906 * 349.22872 * 18 16 15 20 20 Si 1.86799 * 119.99936 * 169.22782 * 18 16 15 21 21 H 1.48504 * 109.47005 * 84.93716 * 20 18 16 22 22 H 1.48502 * 109.47133 * 204.93794 * 20 18 16 23 23 H 1.48496 * 109.47286 * 324.94170 * 20 18 16 24 24 C 1.47335 * 117.25067 * 42.94663 * 15 14 13 25 25 C 1.49971 * 117.69458 * 274.74327 * 12 11 10 26 26 C 1.37937 * 119.92598 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47071 * 269.98131 * 1 2 3 28 28 H 1.09003 * 109.46936 * 29.97916 * 1 2 3 29 29 H 1.09004 * 109.46854 * 149.97737 * 1 2 3 30 30 H 1.07999 * 119.84758 * 0.02562 * 3 2 1 31 31 H 1.08006 * 119.92282 * 180.02562 * 4 3 2 32 32 H 1.08989 * 109.47292 * 263.38872 * 6 5 4 33 33 H 1.09004 * 109.46896 * 23.38931 * 6 5 4 34 34 H 1.08998 * 109.46974 * 143.38532 * 6 5 4 35 35 H 0.97002 * 120.00582 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.47056 * 300.00089 * 11 10 8 37 37 H 1.09005 * 109.46660 * 60.00465 * 11 10 8 38 38 H 1.08004 * 118.17147 * 0.87763 * 13 12 11 39 39 H 1.09003 * 109.51893 * 108.92683 * 14 13 12 40 40 H 1.08995 * 109.52862 * 229.11293 * 14 13 12 41 41 H 0.97003 * 119.99925 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.78088 * 57.81182 * 24 15 14 43 43 H 1.09003 * 109.77832 * 178.61901 * 24 15 14 44 44 H 1.09004 * 109.31624 * 281.28520 * 25 12 11 45 45 H 1.08993 * 109.31850 * 40.71992 * 25 12 11 46 46 H 1.08003 * 120.07508 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1993 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.2813 0.0193 0.0034 6 6 5.7882 0.0307 0.0087 7 6 3.5912 -1.1936 -0.0019 8 6 4.3352 -2.4712 -0.0024 9 8 5.5456 -2.4695 -0.1135 10 7 3.6715 -3.6377 0.1203 11 6 4.4088 -4.9037 0.1193 12 6 3.4407 -6.0488 0.2695 13 6 3.0253 -6.6310 -0.8096 14 6 2.0468 -7.7721 -0.8167 15 7 1.8676 -8.2627 0.5575 16 6 1.8272 -9.6028 0.8364 17 1 2.1173 -9.9599 1.8135 18 6 1.4136 -10.5021 -0.1367 19 7 0.8618 -10.0621 -1.2476 20 14 1.6402 -12.3370 0.1305 21 1 0.4933 -12.8691 0.9095 22 1 1.7070 -13.0241 -1.1842 23 1 2.9003 -12.5764 0.8789 24 6 1.7337 -7.2532 1.6222 25 6 3.0311 -6.4376 1.6588 26 6 2.1952 -1.1955 -0.0005 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6539 2.1325 0.0004 31 1 4.1136 2.1475 -0.0001 32 1 6.1560 -0.0861 -1.0106 33 1 6.1429 0.9773 0.4167 34 1 6.1556 -0.7906 0.6240 35 1 2.7055 -3.6392 0.2086 36 1 4.9516 -5.0072 -0.8202 37 1 5.1146 -4.9138 0.9499 38 1 3.4032 -6.2774 -1.7575 39 1 1.0895 -7.4284 -1.2085 40 1 2.4302 -8.5769 -1.4437 41 1 0.5724 -10.6906 -1.9274 42 1 0.8886 -6.5994 1.4064 43 1 1.5831 -7.7472 2.5821 44 1 3.8224 -7.0326 2.1148 45 1 2.8726 -5.5378 2.2531 46 1 1.6552 -2.1308 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001402107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:29 Heat of formation + Delta-G solvation = 19.522695 kcal Electronic energy + Delta-G solvation = -25454.601825 eV Core-core repulsion = 21923.558813 eV Total energy + Delta-G solvation = -3531.043012 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.51531 -38.73567 -37.68949 -35.14418 -33.84507 -33.04336 -31.59759 -30.67002 -29.73693 -29.33903 -26.98036 -25.27308 -24.43879 -23.54484 -22.74637 -21.53072 -20.92623 -20.30534 -17.83462 -17.46709 -16.30917 -15.91584 -15.65070 -15.44470 -15.19736 -14.96823 -14.80135 -14.10394 -14.00864 -13.73081 -13.60703 -13.32118 -13.28754 -13.04976 -12.89125 -12.71483 -12.25130 -12.07200 -12.01703 -11.85620 -11.74207 -11.58611 -11.36069 -11.29503 -10.90547 -10.76602 -10.40977 -10.33956 -9.87509 -9.71246 -9.58854 -9.25527 -8.96763 -8.72241 -8.66026 -8.08311 -6.74207 -5.82367 -3.24589 0.68476 1.09645 2.57004 2.79545 3.36101 3.42566 3.44479 3.51493 3.64501 4.46397 4.48014 4.53912 4.60095 4.77472 4.94074 5.10218 5.19916 5.27210 5.33869 5.35474 5.39326 5.44519 5.51296 5.55068 5.69497 5.71652 5.80089 5.81520 5.92919 6.00193 6.04846 6.11831 6.15230 6.26664 6.30536 6.38732 6.46490 6.54387 6.68039 6.71249 6.84357 7.14778 7.24533 7.30725 7.57521 7.70710 7.80225 8.23096 8.36915 9.17347 9.78813 10.37590 11.27896 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022812 B = 0.002644 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.120751 B =10585.900837 C =11304.427118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.030 4.030 6 C -0.120 4.120 7 C -0.133 4.133 8 C 0.553 3.447 9 O -0.538 6.538 10 N -0.716 5.716 11 C 0.158 3.842 12 C -0.168 4.168 13 C -0.124 4.124 14 C 0.194 3.806 15 N -0.595 5.595 16 C -0.246 4.246 17 H 0.068 0.932 18 C 0.000 4.000 19 N -0.912 5.912 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.144 3.856 25 C -0.090 4.090 26 C -0.082 4.082 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.400 0.600 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.041 0.959 40 H 0.095 0.905 41 H 0.254 0.746 42 H 0.023 0.977 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 22.264 2.128 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.101 4.101 3 C -0.112 4.112 4 C -0.148 4.148 5 C -0.031 4.031 6 C -0.176 4.176 7 C -0.136 4.136 8 C 0.341 3.659 9 O -0.417 6.417 10 N -0.367 5.367 11 C 0.036 3.964 12 C -0.169 4.169 13 C -0.144 4.144 14 C 0.069 3.931 15 N -0.319 5.319 16 C -0.376 4.376 17 H 0.085 0.915 18 C -0.198 4.198 19 N -0.557 5.557 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.017 3.983 25 C -0.129 4.129 26 C -0.100 4.100 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.236 0.764 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.938 22.091 1.918 22.368 hybrid contribution -0.418 -0.920 -0.010 1.010 sum 2.521 21.171 1.909 21.406 Atomic orbital electron populations 1.20806 0.90663 1.03093 1.02596 1.19845 0.96417 0.92801 1.01083 1.21214 0.94170 0.97629 0.98138 1.21033 0.94070 0.97525 1.02128 1.20047 0.96896 0.91464 0.94683 1.21065 0.90076 1.02808 1.03651 1.19841 0.93493 0.93370 1.06932 1.18284 0.87172 0.83673 0.76768 1.90709 1.13702 1.87199 1.50076 1.46154 1.11164 1.05703 1.73639 1.20479 0.93458 0.80732 1.01778 1.20496 1.01796 0.98310 0.96300 1.23327 0.96895 0.97701 0.96503 1.19779 0.93536 0.92163 0.87581 1.44102 1.84385 1.01566 1.01817 1.19164 1.37567 0.81609 0.99239 0.91472 1.25066 0.98566 0.98354 0.97810 1.69961 1.43580 1.33298 1.08855 0.86243 0.78018 0.85103 0.76978 1.21314 1.21559 1.20584 1.20994 0.93014 0.91186 0.93067 1.20793 1.00299 0.98926 0.92918 1.21238 0.92821 0.98231 0.97735 0.90979 0.91466 0.91163 0.85715 0.85468 0.90764 0.92636 0.88637 0.76444 0.91537 0.91483 0.88797 0.94109 0.88722 0.93551 0.95899 0.92463 0.91706 0.92945 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.10 -0.92 5.87 -104.68 -0.61 -1.54 16 3 C -0.09 -0.79 9.69 -39.49 -0.38 -1.17 16 4 C -0.13 -1.19 9.66 -39.64 -0.38 -1.58 16 5 C -0.03 -0.34 5.91 -104.23 -0.62 -0.96 16 6 C -0.12 -1.32 8.72 36.01 0.31 -1.01 16 7 C -0.13 -1.64 5.87 -104.97 -0.62 -2.26 16 8 C 0.55 7.91 7.70 -12.33 -0.09 7.82 16 9 O -0.54 -9.00 13.35 5.32 0.07 -8.92 16 10 N -0.72 -9.65 5.50 -62.43 -0.34 -9.99 16 11 C 0.16 2.38 5.66 -5.19 -0.03 2.35 16 12 C -0.17 -2.85 5.22 -100.99 -0.53 -3.38 16 13 C -0.12 -2.32 9.47 -35.78 -0.34 -2.65 16 14 C 0.19 4.52 5.19 -5.10 -0.03 4.49 16 15 N -0.60 -14.64 3.00 -173.56 -0.52 -15.16 16 16 C -0.25 -6.67 9.71 -15.06 -0.15 -6.81 16 17 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 18 C 0.00 0.00 5.10 -17.43 -0.09 -0.09 16 19 N -0.91 -25.89 10.96 55.49 0.61 -25.28 16 20 Si 0.91 21.52 29.57 -169.99 -5.03 16.49 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.14 2.91 6.59 -3.43 -0.02 2.89 16 25 C -0.09 -1.55 5.95 -28.08 -0.17 -1.72 16 26 C -0.08 -0.85 9.17 -39.18 -0.36 -1.21 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.07 0.84 8.14 -51.94 -0.42 0.41 16 33 H 0.05 0.48 8.04 -51.93 -0.42 0.06 16 34 H 0.10 1.25 5.88 -51.93 -0.31 0.94 16 35 H 0.40 4.79 6.53 -40.82 -0.27 4.52 16 36 H 0.07 1.03 7.78 -51.93 -0.40 0.63 16 37 H 0.07 1.03 8.11 -51.93 -0.42 0.60 16 38 H 0.09 1.59 7.73 -52.48 -0.41 1.19 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 2.47 6.43 -51.93 -0.33 2.14 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.13 1.17 6.45 -52.48 -0.34 0.83 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -30.53 371.43 -10.43 -40.96 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.07 Total: 3.57 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -3.74 Total: -7.26 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.26 Total: -50.44 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.07 Total: -8.92 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.53 -10.43 -40.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001402107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.487 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds