Wall clock time and date at job start Tue Mar 31 2020 10:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38385 * 119.92971 * 2 1 4 4 C 1.38333 * 120.29147 * 180.02562 * 3 2 1 5 5 C 1.37976 * 120.14781 * 359.78331 * 4 3 2 6 6 C 1.50701 * 120.07541 * 180.25762 * 5 4 3 7 7 C 1.39553 * 119.85249 * 0.46903 * 5 4 3 8 8 C 1.47842 * 120.14605 * 179.78929 * 7 5 4 9 9 O 1.21549 * 119.99908 * 353.70723 * 8 7 5 10 10 N 1.34773 * 120.00129 * 173.71208 * 8 7 5 11 11 C 1.46508 * 120.00144 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47047 * 179.97438 * 11 10 8 13 13 C 1.29453 * 117.69625 * 95.00487 * 12 11 10 14 14 C 1.50318 * 123.65739 * 180.85492 * 13 12 11 15 15 N 1.47005 * 109.16327 * 349.02425 * 14 13 12 16 16 C 1.36939 * 121.37314 * 222.96326 * 15 14 13 17 17 H 1.08002 * 119.99720 * 153.72572 * 16 15 14 18 18 C 1.38809 * 120.00149 * 333.72999 * 16 15 14 19 19 N 1.31618 * 119.99906 * 349.22872 * 18 16 15 20 20 Si 1.86799 * 119.99936 * 169.22782 * 18 16 15 21 21 H 1.48504 * 109.47005 * 84.93716 * 20 18 16 22 22 H 1.48502 * 109.47133 * 204.93794 * 20 18 16 23 23 H 1.48496 * 109.47286 * 324.94170 * 20 18 16 24 24 C 1.47335 * 117.25067 * 42.94663 * 15 14 13 25 25 C 1.49971 * 117.69458 * 274.74327 * 12 11 10 26 26 C 1.37937 * 119.92598 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47071 * 269.98131 * 1 2 3 28 28 H 1.09003 * 109.46936 * 29.97916 * 1 2 3 29 29 H 1.09004 * 109.46854 * 149.97737 * 1 2 3 30 30 H 1.07999 * 119.84758 * 0.02562 * 3 2 1 31 31 H 1.08006 * 119.92282 * 180.02562 * 4 3 2 32 32 H 1.08989 * 109.47292 * 263.38872 * 6 5 4 33 33 H 1.09004 * 109.46896 * 23.38931 * 6 5 4 34 34 H 1.08998 * 109.46974 * 143.38532 * 6 5 4 35 35 H 0.97002 * 120.00582 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.47056 * 300.00089 * 11 10 8 37 37 H 1.09005 * 109.46660 * 60.00465 * 11 10 8 38 38 H 1.08004 * 118.17147 * 0.87763 * 13 12 11 39 39 H 1.09003 * 109.51893 * 108.92683 * 14 13 12 40 40 H 1.08995 * 109.52862 * 229.11293 * 14 13 12 41 41 H 0.97003 * 119.99925 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.78088 * 57.81182 * 24 15 14 43 43 H 1.09003 * 109.77832 * 178.61901 * 24 15 14 44 44 H 1.09004 * 109.31624 * 281.28520 * 25 12 11 45 45 H 1.08993 * 109.31850 * 40.71992 * 25 12 11 46 46 H 1.08003 * 120.07508 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1993 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.2813 0.0193 0.0034 6 6 5.7882 0.0307 0.0087 7 6 3.5912 -1.1936 -0.0019 8 6 4.3352 -2.4712 -0.0024 9 8 5.5456 -2.4695 -0.1135 10 7 3.6715 -3.6377 0.1203 11 6 4.4088 -4.9037 0.1193 12 6 3.4407 -6.0488 0.2695 13 6 3.0253 -6.6310 -0.8096 14 6 2.0468 -7.7721 -0.8167 15 7 1.8676 -8.2627 0.5575 16 6 1.8272 -9.6028 0.8364 17 1 2.1173 -9.9599 1.8135 18 6 1.4136 -10.5021 -0.1367 19 7 0.8618 -10.0621 -1.2476 20 14 1.6402 -12.3370 0.1305 21 1 0.4933 -12.8691 0.9095 22 1 1.7070 -13.0241 -1.1842 23 1 2.9003 -12.5764 0.8789 24 6 1.7337 -7.2532 1.6222 25 6 3.0311 -6.4376 1.6588 26 6 2.1952 -1.1955 -0.0005 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6539 2.1325 0.0004 31 1 4.1136 2.1475 -0.0001 32 1 6.1560 -0.0861 -1.0106 33 1 6.1429 0.9773 0.4167 34 1 6.1556 -0.7906 0.6240 35 1 2.7055 -3.6392 0.2086 36 1 4.9516 -5.0072 -0.8202 37 1 5.1146 -4.9138 0.9499 38 1 3.4032 -6.2774 -1.7575 39 1 1.0895 -7.4284 -1.2085 40 1 2.4302 -8.5769 -1.4437 41 1 0.5724 -10.6906 -1.9274 42 1 0.8886 -6.5994 1.4064 43 1 1.5831 -7.7472 2.5821 44 1 3.8224 -7.0326 2.1148 45 1 2.8726 -5.5378 2.2531 46 1 1.6552 -2.1308 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001402107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:28 Heat of formation + Delta-G solvation = 3.280501 kcal Electronic energy + Delta-G solvation = -25455.306139 eV Core-core repulsion = 21923.558813 eV Total energy + Delta-G solvation = -3531.747326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.46797 -39.80946 -39.11346 -36.54134 -34.83794 -34.41895 -32.94518 -31.94648 -31.38287 -30.08769 -28.52644 -26.31487 -25.70489 -24.62100 -24.28268 -22.94599 -22.05411 -21.29828 -19.51471 -18.63377 -17.46126 -17.26586 -16.97817 -16.56429 -16.41280 -16.04358 -15.92700 -15.55699 -15.32106 -15.17740 -14.83667 -14.50465 -14.36577 -14.00310 -13.91909 -13.74682 -13.58324 -13.42104 -13.27792 -12.93159 -12.78451 -12.74922 -12.60432 -12.53269 -12.45702 -12.24823 -12.10828 -11.98880 -11.73715 -11.27544 -10.77520 -10.68589 -10.22027 -9.89574 -9.66945 -9.42729 -8.72091 -7.88480 -5.33193 -0.12865 0.36901 1.15443 1.46946 1.48284 1.56984 1.84383 2.36892 2.50476 2.82049 3.29538 3.60613 3.66674 3.79468 3.86039 3.91454 3.95702 4.07495 4.29332 4.41932 4.43936 4.52004 4.60832 4.65499 4.72667 4.75379 4.82285 4.82419 4.85044 4.89121 4.90748 4.99180 5.09114 5.16527 5.21265 5.29779 5.32062 5.38474 5.44910 5.48589 5.58408 5.60730 5.61773 5.75061 5.97726 6.14985 6.34986 6.49958 7.13765 7.15377 7.82639 8.37097 9.19754 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022812 B = 0.002644 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.120751 B =10585.900837 C =11304.427118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.105 4.105 3 C -0.088 4.088 4 C -0.129 4.129 5 C -0.049 4.049 6 C -0.115 4.115 7 C -0.156 4.156 8 C 0.552 3.448 9 O -0.568 6.568 10 N -0.710 5.710 11 C 0.168 3.832 12 C -0.141 4.141 13 C -0.141 4.141 14 C 0.206 3.794 15 N -0.616 5.616 16 C -0.258 4.258 17 H 0.069 0.931 18 C -0.053 4.053 19 N -0.940 5.940 20 Si 0.970 3.030 21 H -0.282 1.282 22 H -0.293 1.293 23 H -0.273 1.273 24 C 0.139 3.861 25 C -0.084 4.084 26 C -0.089 4.089 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.409 0.591 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.015 0.985 40 H 0.058 0.942 41 H 0.250 0.750 42 H 0.029 0.971 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 24.585 3.238 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.105 4.105 3 C -0.106 4.106 4 C -0.146 4.146 5 C -0.050 4.050 6 C -0.171 4.171 7 C -0.159 4.159 8 C 0.341 3.659 9 O -0.449 6.449 10 N -0.361 5.361 11 C 0.045 3.955 12 C -0.142 4.142 13 C -0.161 4.161 14 C 0.081 3.919 15 N -0.340 5.340 16 C -0.388 4.388 17 H 0.087 0.913 18 C -0.248 4.248 19 N -0.587 5.587 20 Si 0.798 3.202 21 H -0.209 1.209 22 H -0.220 1.220 23 H -0.198 1.198 24 C 0.014 3.986 25 C -0.123 4.123 26 C -0.108 4.108 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.173 0.827 31 H 0.170 0.830 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.246 0.754 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.129 0.871 39 H 0.033 0.967 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.680 24.435 3.055 24.771 hybrid contribution -0.378 -1.522 -0.288 1.595 sum 2.302 22.913 2.767 23.194 Atomic orbital electron populations 1.20856 0.89009 1.03872 1.03345 1.20176 0.97684 0.92556 1.00124 1.21616 0.94057 0.98654 0.96267 1.21329 0.94626 0.97617 1.01075 1.20233 0.97022 0.92114 0.95590 1.20968 0.90351 1.03054 1.02732 1.19787 0.94247 0.92564 1.09267 1.18657 0.86937 0.84385 0.75912 1.90698 1.15047 1.87668 1.51509 1.45995 1.11506 1.05010 1.73595 1.20254 0.92844 0.80593 1.01780 1.20599 1.00220 0.97656 0.95677 1.22991 0.97712 0.97245 0.98180 1.19405 0.93419 0.92424 0.86632 1.44379 1.84732 1.01767 1.03099 1.19495 1.36880 0.83158 0.99279 0.91308 1.25813 0.98888 1.02302 0.97782 1.70131 1.44777 1.34218 1.09536 0.85257 0.78103 0.80312 0.76561 1.20861 1.21970 1.19828 1.21175 0.94825 0.90703 0.91889 1.20730 0.98437 0.99751 0.93384 1.21383 0.92161 0.99377 0.97874 0.90146 0.89879 0.91286 0.82689 0.83004 0.91666 0.90273 0.91083 0.75435 0.91919 0.91180 0.87106 0.96722 0.92364 0.94093 0.95286 0.92221 0.91805 0.89597 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 71.24 0.71 -0.52 16 2 C -0.11 -1.64 5.87 -19.90 -0.12 -1.76 16 3 C -0.09 -1.19 9.69 22.33 0.22 -0.97 16 4 C -0.13 -2.01 9.66 22.23 0.21 -1.80 16 5 C -0.05 -1.04 5.91 -19.61 -0.12 -1.16 16 6 C -0.11 -2.47 8.72 71.24 0.62 -1.85 16 7 C -0.16 -3.69 5.87 -20.09 -0.12 -3.80 16 8 C 0.55 15.51 7.70 86.79 0.67 16.18 16 9 O -0.57 -19.12 13.35 -3.87 -0.05 -19.17 16 10 N -0.71 -18.29 5.50 -469.70 -2.58 -20.87 16 11 C 0.17 4.84 5.66 85.63 0.48 5.32 16 12 C -0.14 -4.60 5.22 -15.14 -0.08 -4.68 16 13 C -0.14 -5.28 9.47 27.11 0.26 -5.03 16 14 C 0.21 9.92 5.19 85.42 0.44 10.37 16 15 N -0.62 -30.67 3.00 -703.03 -2.11 -32.78 16 16 C -0.26 -14.14 9.71 84.03 0.82 -13.32 16 17 H 0.07 3.66 7.85 -2.91 -0.02 3.63 16 18 C -0.05 -2.95 5.10 84.86 0.43 -2.52 16 19 N -0.94 -55.11 10.96 21.65 0.24 -54.87 16 20 Si 0.97 44.85 29.57 68.60 2.03 46.88 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 C 0.14 5.52 6.59 86.32 0.57 6.09 16 25 C -0.08 -2.73 5.95 29.72 0.18 -2.56 16 26 C -0.09 -1.72 9.17 22.53 0.21 -1.52 16 27 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 29 H 0.07 0.77 8.08 -2.38 -0.02 0.75 16 30 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 31 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.25 8.04 -2.38 -0.02 1.23 16 34 H 0.07 1.89 5.88 -2.39 -0.01 1.87 16 35 H 0.41 9.14 6.53 -92.71 -0.61 8.53 16 36 H 0.06 1.89 7.78 -2.39 -0.02 1.87 16 37 H 0.07 2.02 8.11 -2.38 -0.02 2.00 16 38 H 0.11 3.75 7.73 -2.91 -0.02 3.73 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 3.19 6.43 -2.39 -0.02 3.18 16 41 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 42 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 2.30 7.96 -2.39 -0.02 2.28 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.13 2.26 6.45 -2.91 -0.02 2.24 16 Total: -1.00 -67.61 371.43 3.28 -64.33 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.37 Total: 20.01 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 5.39 Total: -3.52 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -4.46 Total: -108.53 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.05 Total: -19.17 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -67.61 3.28 -64.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001402107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.608 kcal (2) G-P(sol) polarization free energy of solvation -67.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds