Wall clock time and date at job start Tue Mar 31 2020 10:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38378 * 119.92310 * 2 1 4 4 C 1.38345 * 120.28619 * 180.28209 * 3 2 1 5 5 C 1.37973 * 120.14596 * 359.48984 * 4 3 2 6 6 C 1.39554 * 119.85112 * 0.25108 * 5 4 3 7 7 C 1.47847 * 120.14103 * 179.97438 * 6 5 4 8 8 O 1.21558 * 119.99873 * 173.76137 * 7 6 5 9 9 N 1.34773 * 120.00248 * 353.76238 * 7 6 5 10 10 C 1.46506 * 120.00252 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.47190 * 179.97438 * 10 9 7 12 12 C 1.29451 * 117.68992 * 94.99801 * 11 10 9 13 13 C 1.50325 * 123.64835 * 180.85323 * 12 11 10 14 14 N 1.47002 * 109.16675 * 349.03149 * 13 12 11 15 15 C 1.36938 * 121.37158 * 222.96500 * 14 13 12 16 16 H 1.08010 * 119.99754 * 152.82097 * 15 14 13 17 17 C 1.38802 * 120.00244 * 332.82590 * 15 14 13 18 18 N 1.31621 * 120.00400 * 349.81283 * 17 15 14 19 19 Si 1.86800 * 120.00367 * 169.81444 * 17 15 14 20 20 H 1.48503 * 109.47475 * 89.99694 * 19 17 15 21 21 H 1.48496 * 109.47679 * 209.99982 * 19 17 15 22 22 H 1.48503 * 109.46888 * 329.99919 * 19 17 15 23 23 C 1.47334 * 117.25127 * 42.94157 * 14 13 12 24 24 C 1.49959 * 117.69419 * 274.73967 * 11 10 9 25 25 C 1.37932 * 119.92561 * 179.77007 * 2 1 3 26 26 C 1.50696 * 120.07587 * 359.97438 * 25 2 1 27 27 H 1.09007 * 109.47296 * 270.23159 * 1 2 3 28 28 H 1.09000 * 109.47392 * 30.22696 * 1 2 3 29 29 H 1.08993 * 109.47362 * 150.23497 * 1 2 3 30 30 H 1.07994 * 119.86378 * 0.04475 * 3 2 1 31 31 H 1.08002 * 119.92176 * 179.76184 * 4 3 2 32 32 H 1.08001 * 120.07507 * 180.27675 * 5 4 3 33 33 H 0.96998 * 120.00092 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47051 * 300.00114 * 10 9 7 35 35 H 1.09008 * 109.46840 * 59.99736 * 10 9 7 36 36 H 1.07997 * 118.17766 * 0.88881 * 12 11 10 37 37 H 1.09003 * 109.51740 * 108.93776 * 13 12 11 38 38 H 1.09000 * 109.52240 * 229.11463 * 13 12 11 39 39 H 0.96998 * 120.00321 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.77954 * 57.81260 * 23 14 13 41 41 H 1.08999 * 109.78055 * 178.61707 * 23 14 13 42 42 H 1.09004 * 109.31683 * 281.28998 * 24 11 10 43 43 H 1.09005 * 109.31920 * 40.72206 * 24 11 10 44 44 H 1.09003 * 109.47276 * 263.66838 * 26 25 2 45 45 H 1.09000 * 109.47373 * 23.67396 * 26 25 2 46 46 H 1.09004 * 109.47123 * 143.66824 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5807 1.2081 -0.0059 5 6 4.2812 0.0194 -0.0012 6 6 3.5911 -1.1935 0.0043 7 6 4.3352 -2.4711 0.0088 8 8 3.7369 -3.5225 0.1279 9 7 5.6769 -2.4699 -0.1192 10 6 6.4143 -3.7358 -0.1141 11 6 7.8875 -3.4597 -0.2716 12 6 8.6028 -3.3797 0.8043 13 6 10.0782 -3.0915 0.8041 14 7 10.5880 -3.1852 -0.5715 15 6 11.7725 -3.8128 -0.8516 16 1 11.9306 -4.2594 -1.8223 17 6 12.7697 -3.8751 0.1118 18 7 12.6637 -3.1661 1.2156 19 14 14.2624 -4.9652 -0.1581 20 1 15.3234 -4.1896 -0.8496 21 1 14.7719 -5.4407 1.1532 22 1 13.8787 -6.1321 -0.9927 23 6 9.7718 -2.5764 -1.6364 24 6 8.4222 -3.3028 -1.6638 25 6 2.1951 -1.1954 0.0048 26 6 1.4417 -2.5005 0.0106 27 1 -0.3634 0.0042 1.0277 28 1 -0.3634 0.8879 -0.5173 29 1 -0.3634 -0.8920 -0.5101 30 1 1.6538 2.1326 0.0007 31 1 4.1135 2.1476 -0.0097 32 1 5.3612 0.0276 -0.0013 33 1 6.1542 -1.6309 -0.2146 34 1 6.2402 -4.2540 0.8289 35 1 6.0715 -4.3593 -0.9400 36 1 8.1126 -3.5288 1.7550 37 1 10.2532 -2.0871 1.1898 38 1 10.5915 -3.8187 1.4332 39 1 13.3608 -3.2093 1.8887 40 1 9.6209 -1.5176 -1.4258 41 1 10.2721 -2.6943 -2.5976 42 1 8.5476 -4.2871 -2.1149 43 1 7.7154 -2.7241 -2.2585 44 1 1.3585 -2.8675 1.0336 45 1 0.4447 -2.3464 -0.4023 46 1 1.9768 -3.2317 -0.5954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001420157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:42 Heat of formation + Delta-G solvation = 23.137099 kcal Electronic energy + Delta-G solvation = -25398.797063 eV Core-core repulsion = 21867.910783 eV Total energy + Delta-G solvation = -3530.886280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.55069 -38.77902 -37.67820 -35.11213 -33.78544 -32.77975 -32.27174 -30.86440 -29.75110 -28.16762 -26.78486 -26.60239 -24.46921 -23.18772 -22.68885 -21.24265 -20.98223 -20.26359 -17.91203 -17.52351 -16.38316 -16.04946 -15.64185 -15.47994 -15.23986 -15.01894 -14.68008 -14.28778 -13.97525 -13.68797 -13.55363 -13.31884 -13.18368 -13.07714 -12.86175 -12.59885 -12.25939 -12.10591 -12.06079 -11.97953 -11.84016 -11.58050 -11.35087 -11.07341 -10.90487 -10.77044 -10.40472 -10.33606 -9.87734 -9.70320 -9.58251 -9.18117 -8.88806 -8.77238 -8.71837 -8.08443 -6.72725 -5.82402 -3.25426 0.68400 1.10816 2.57085 2.79682 3.35898 3.42640 3.44576 3.51215 3.65375 4.46372 4.47904 4.56563 4.62868 4.77627 4.91067 5.02617 5.12387 5.26302 5.34006 5.34537 5.39670 5.40895 5.55237 5.58748 5.66320 5.73508 5.77915 5.81451 5.93148 6.05124 6.05996 6.13350 6.15343 6.20406 6.30962 6.40610 6.46970 6.54909 6.69161 6.71807 6.84813 7.14954 7.24309 7.30870 7.57826 7.71124 7.80178 8.23382 8.37552 9.17542 9.78794 10.38085 11.27918 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.031260 B = 0.002429 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.494289 B =11523.839641 C =11912.708183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.102 4.102 3 C -0.094 4.094 4 C -0.131 4.131 5 C -0.086 4.086 6 C -0.134 4.134 7 C 0.553 3.447 8 O -0.538 6.538 9 N -0.715 5.715 10 C 0.158 3.842 11 C -0.168 4.168 12 C -0.124 4.124 13 C 0.194 3.806 14 N -0.595 5.595 15 C -0.246 4.246 16 H 0.067 0.933 17 C 0.000 4.000 18 N -0.911 5.911 19 Si 0.907 3.093 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.144 3.856 24 C -0.090 4.090 25 C -0.025 4.025 26 C -0.125 4.125 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.400 0.600 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.042 0.958 38 H 0.094 0.906 39 H 0.254 0.746 40 H 0.023 0.977 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.976 8.179 -2.051 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.102 4.102 3 C -0.112 4.112 4 C -0.149 4.149 5 C -0.105 4.105 6 C -0.137 4.137 7 C 0.341 3.659 8 O -0.417 6.417 9 N -0.366 5.366 10 C 0.036 3.964 11 C -0.169 4.169 12 C -0.144 4.144 13 C 0.070 3.930 14 N -0.319 5.319 15 C -0.376 4.376 16 H 0.085 0.915 17 C -0.198 4.198 18 N -0.557 5.557 19 Si 0.736 3.264 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.017 3.983 24 C -0.129 4.129 25 C -0.026 4.026 26 C -0.181 4.181 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.059 0.941 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.234 7.383 -1.839 23.500 hybrid contribution 1.153 -0.004 0.028 1.153 sum -21.081 7.379 -1.811 22.408 Atomic orbital electron populations 1.20863 0.90886 1.03013 1.02514 1.19759 0.96330 0.92349 1.01739 1.21211 0.94318 0.97499 0.98166 1.21067 0.94221 0.98061 1.01545 1.21343 0.99964 0.91785 0.97414 1.19839 0.93728 0.93163 1.06965 1.18290 0.82143 0.88699 0.76771 1.90707 1.67867 1.33087 1.50053 1.46149 1.06280 1.10676 1.73542 1.20480 0.89364 0.84842 1.01759 1.20494 0.92664 1.07411 0.96300 1.23325 0.99635 0.94950 0.96526 1.19770 0.85497 1.00190 0.87581 1.44091 1.21583 1.64544 1.01634 1.19163 0.90455 1.27922 1.00045 0.91503 1.25092 0.97573 0.99185 0.97914 1.69960 1.34460 1.41688 1.09552 0.86226 0.82803 0.80280 0.77044 1.21375 1.21570 1.20498 1.20998 0.90128 0.94069 0.93079 1.20790 0.98298 1.00959 0.92878 1.19879 0.92040 0.95712 0.94927 1.21166 0.98934 0.94322 1.03654 0.91073 0.91559 0.90835 0.85733 0.85376 0.85456 0.76419 0.91544 0.91492 0.88798 0.94071 0.88848 0.93557 0.95895 0.92456 0.91714 0.92945 0.90714 0.92119 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 9.59 36.01 0.35 -0.44 16 2 C -0.10 -0.96 5.87 -104.68 -0.61 -1.57 16 3 C -0.09 -0.80 9.69 -39.49 -0.38 -1.18 16 4 C -0.13 -1.16 10.03 -39.64 -0.40 -1.56 16 5 C -0.09 -0.89 9.53 -39.19 -0.37 -1.26 16 6 C -0.13 -1.65 5.87 -104.97 -0.62 -2.26 16 7 C 0.55 7.90 7.70 -12.33 -0.09 7.81 16 8 O -0.54 -8.99 13.34 5.31 0.07 -8.92 16 9 N -0.72 -9.64 5.50 -62.42 -0.34 -9.98 16 10 C 0.16 2.38 5.66 -5.19 -0.03 2.35 16 11 C -0.17 -2.85 5.22 -100.99 -0.53 -3.38 16 12 C -0.12 -2.32 9.47 -35.78 -0.34 -2.66 16 13 C 0.19 4.53 5.18 -5.10 -0.03 4.51 16 14 N -0.60 -14.66 3.00 -173.56 -0.52 -15.18 16 15 C -0.25 -6.67 9.70 -15.06 -0.15 -6.82 16 16 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 17 C 0.00 0.01 5.11 -17.43 -0.09 -0.08 16 18 N -0.91 -25.94 10.99 55.49 0.61 -25.33 16 19 Si 0.91 21.54 29.57 -169.99 -5.03 16.52 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.14 2.91 6.59 -3.44 -0.02 2.89 16 24 C -0.09 -1.55 5.95 -28.09 -0.17 -1.72 16 25 C -0.02 -0.28 5.91 -104.23 -0.62 -0.90 16 26 C -0.12 -1.38 8.43 36.00 0.30 -1.07 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.07 0.47 5.88 -51.93 -0.31 0.16 16 30 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.13 1.13 6.45 -52.49 -0.34 0.79 16 33 H 0.40 4.77 6.54 -40.82 -0.27 4.51 16 34 H 0.07 1.03 7.78 -51.93 -0.40 0.63 16 35 H 0.07 1.02 8.11 -51.92 -0.42 0.60 16 36 H 0.09 1.59 7.73 -52.49 -0.41 1.19 16 37 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 2.44 6.48 -51.93 -0.34 2.10 16 39 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 41 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.52 5.71 -51.93 -0.30 0.22 16 46 H 0.10 1.25 5.84 -51.93 -0.30 0.95 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -30.69 366.93 -10.31 -41.01 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.84 Total: 3.70 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -3.79 Total: -7.34 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.25 Total: -50.49 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.07 Total: -8.92 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.69 -10.31 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001420157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.145 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds