Wall clock time and date at job start Tue Mar 31 2020 10:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38378 * 119.92310 * 2 1 4 4 C 1.38345 * 120.28619 * 180.28209 * 3 2 1 5 5 C 1.37973 * 120.14596 * 359.48984 * 4 3 2 6 6 C 1.39554 * 119.85112 * 0.25108 * 5 4 3 7 7 C 1.47847 * 120.14103 * 179.97438 * 6 5 4 8 8 O 1.21558 * 119.99873 * 173.76137 * 7 6 5 9 9 N 1.34773 * 120.00248 * 353.76238 * 7 6 5 10 10 C 1.46506 * 120.00252 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.47190 * 179.97438 * 10 9 7 12 12 C 1.29451 * 117.68992 * 94.99801 * 11 10 9 13 13 C 1.50325 * 123.64835 * 180.85323 * 12 11 10 14 14 N 1.47002 * 109.16675 * 349.03149 * 13 12 11 15 15 C 1.36938 * 121.37158 * 222.96500 * 14 13 12 16 16 H 1.08010 * 119.99754 * 152.82097 * 15 14 13 17 17 C 1.38802 * 120.00244 * 332.82590 * 15 14 13 18 18 N 1.31621 * 120.00400 * 349.81283 * 17 15 14 19 19 Si 1.86800 * 120.00367 * 169.81444 * 17 15 14 20 20 H 1.48503 * 109.47475 * 89.99694 * 19 17 15 21 21 H 1.48496 * 109.47679 * 209.99982 * 19 17 15 22 22 H 1.48503 * 109.46888 * 329.99919 * 19 17 15 23 23 C 1.47334 * 117.25127 * 42.94157 * 14 13 12 24 24 C 1.49959 * 117.69419 * 274.73967 * 11 10 9 25 25 C 1.37932 * 119.92561 * 179.77007 * 2 1 3 26 26 C 1.50696 * 120.07587 * 359.97438 * 25 2 1 27 27 H 1.09007 * 109.47296 * 270.23159 * 1 2 3 28 28 H 1.09000 * 109.47392 * 30.22696 * 1 2 3 29 29 H 1.08993 * 109.47362 * 150.23497 * 1 2 3 30 30 H 1.07994 * 119.86378 * 0.04475 * 3 2 1 31 31 H 1.08002 * 119.92176 * 179.76184 * 4 3 2 32 32 H 1.08001 * 120.07507 * 180.27675 * 5 4 3 33 33 H 0.96998 * 120.00092 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47051 * 300.00114 * 10 9 7 35 35 H 1.09008 * 109.46840 * 59.99736 * 10 9 7 36 36 H 1.07997 * 118.17766 * 0.88881 * 12 11 10 37 37 H 1.09003 * 109.51740 * 108.93776 * 13 12 11 38 38 H 1.09000 * 109.52240 * 229.11463 * 13 12 11 39 39 H 0.96998 * 120.00321 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.77954 * 57.81260 * 23 14 13 41 41 H 1.08999 * 109.78055 * 178.61707 * 23 14 13 42 42 H 1.09004 * 109.31683 * 281.28998 * 24 11 10 43 43 H 1.09005 * 109.31920 * 40.72206 * 24 11 10 44 44 H 1.09003 * 109.47276 * 263.66838 * 26 25 2 45 45 H 1.09000 * 109.47373 * 23.67396 * 26 25 2 46 46 H 1.09004 * 109.47123 * 143.66824 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5807 1.2081 -0.0059 5 6 4.2812 0.0194 -0.0012 6 6 3.5911 -1.1935 0.0043 7 6 4.3352 -2.4711 0.0088 8 8 3.7369 -3.5225 0.1279 9 7 5.6769 -2.4699 -0.1192 10 6 6.4143 -3.7358 -0.1141 11 6 7.8875 -3.4597 -0.2716 12 6 8.6028 -3.3797 0.8043 13 6 10.0782 -3.0915 0.8041 14 7 10.5880 -3.1852 -0.5715 15 6 11.7725 -3.8128 -0.8516 16 1 11.9306 -4.2594 -1.8223 17 6 12.7697 -3.8751 0.1118 18 7 12.6637 -3.1661 1.2156 19 14 14.2624 -4.9652 -0.1581 20 1 15.3234 -4.1896 -0.8496 21 1 14.7719 -5.4407 1.1532 22 1 13.8787 -6.1321 -0.9927 23 6 9.7718 -2.5764 -1.6364 24 6 8.4222 -3.3028 -1.6638 25 6 2.1951 -1.1954 0.0048 26 6 1.4417 -2.5005 0.0106 27 1 -0.3634 0.0042 1.0277 28 1 -0.3634 0.8879 -0.5173 29 1 -0.3634 -0.8920 -0.5101 30 1 1.6538 2.1326 0.0007 31 1 4.1135 2.1476 -0.0097 32 1 5.3612 0.0276 -0.0013 33 1 6.1542 -1.6309 -0.2146 34 1 6.2402 -4.2540 0.8289 35 1 6.0715 -4.3593 -0.9400 36 1 8.1126 -3.5288 1.7550 37 1 10.2532 -2.0871 1.1898 38 1 10.5915 -3.8187 1.4332 39 1 13.3608 -3.2093 1.8887 40 1 9.6209 -1.5176 -1.4258 41 1 10.2721 -2.6943 -2.5976 42 1 8.5476 -4.2871 -2.1149 43 1 7.7154 -2.7241 -2.2585 44 1 1.3585 -2.8675 1.0336 45 1 0.4447 -2.3464 -0.4023 46 1 1.9768 -3.2317 -0.5954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001420157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:41 Heat of formation + Delta-G solvation = 6.565246 kcal Electronic energy + Delta-G solvation = -25399.515672 eV Core-core repulsion = 21867.910783 eV Total energy + Delta-G solvation = -3531.604889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48860 -39.84773 -39.11633 -36.51666 -34.90957 -34.06132 -33.15778 -32.47839 -31.43077 -29.20107 -28.06383 -27.36825 -26.02261 -24.51422 -24.06202 -22.79292 -21.86805 -21.24167 -19.52460 -18.74095 -17.45839 -17.33557 -17.01273 -16.62046 -16.46463 -16.14753 -15.86692 -15.54263 -15.34123 -15.14246 -14.96817 -14.46447 -14.30672 -13.99514 -13.84047 -13.69406 -13.50484 -13.38054 -13.28544 -12.96063 -12.83772 -12.76011 -12.69721 -12.61102 -12.50023 -12.23990 -12.09616 -11.75281 -11.73868 -11.27220 -10.76410 -10.68311 -10.21484 -9.74480 -9.67045 -9.52859 -8.70901 -7.88772 -5.34324 -0.12331 0.38615 1.15619 1.46647 1.47850 1.57028 1.84830 2.36979 2.50172 2.83648 3.29382 3.60833 3.69620 3.79379 3.88491 3.92419 3.95719 4.09909 4.24664 4.38490 4.42329 4.52213 4.58454 4.67977 4.71067 4.75320 4.78614 4.83206 4.86337 4.90651 4.95497 4.97198 5.09320 5.16543 5.21176 5.29280 5.36360 5.39267 5.46411 5.48400 5.51169 5.60904 5.67133 5.75195 5.99588 6.15049 6.35305 6.50773 7.13760 7.16056 7.82383 8.37296 9.19543 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.031260 B = 0.002429 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.494289 B =11523.839641 C =11912.708183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.106 4.106 3 C -0.090 4.090 4 C -0.132 4.132 5 C -0.093 4.093 6 C -0.157 4.157 7 C 0.551 3.449 8 O -0.569 6.569 9 N -0.709 5.709 10 C 0.168 3.832 11 C -0.140 4.140 12 C -0.141 4.141 13 C 0.206 3.794 14 N -0.616 5.616 15 C -0.257 4.257 16 H 0.069 0.931 17 C -0.053 4.053 18 N -0.940 5.940 19 Si 0.970 3.030 20 H -0.283 1.283 21 H -0.293 1.293 22 H -0.272 1.272 23 C 0.139 3.861 24 C -0.084 4.084 25 C -0.045 4.045 26 C -0.119 4.119 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.137 0.863 33 H 0.409 0.591 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.015 0.985 38 H 0.057 0.943 39 H 0.250 0.750 40 H 0.029 0.971 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.885 9.551 -3.171 25.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.106 4.106 3 C -0.108 4.108 4 C -0.149 4.149 5 C -0.112 4.112 6 C -0.160 4.160 7 C 0.341 3.659 8 O -0.450 6.450 9 N -0.361 5.361 10 C 0.045 3.955 11 C -0.141 4.141 12 C -0.161 4.161 13 C 0.081 3.919 14 N -0.340 5.340 15 C -0.387 4.387 16 H 0.086 0.914 17 C -0.248 4.248 18 N -0.587 5.587 19 Si 0.798 3.202 20 H -0.210 1.210 21 H -0.220 1.220 22 H -0.197 1.197 23 C 0.014 3.986 24 C -0.123 4.123 25 C -0.046 4.046 26 C -0.175 4.175 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.172 0.828 31 H 0.171 0.829 32 H 0.155 0.845 33 H 0.246 0.754 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.129 0.871 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.159 8.776 -2.985 25.876 hybrid contribution 1.658 -0.341 0.310 1.721 sum -22.500 8.435 -2.675 24.178 Atomic orbital electron populations 1.20923 0.89007 1.03997 1.03298 1.20089 0.97794 0.91890 1.00840 1.21624 0.94438 0.98349 0.96365 1.21424 0.94692 0.98458 1.00363 1.21521 1.00616 0.91666 0.97364 1.19800 0.94175 0.92721 1.09333 1.18666 0.82093 0.89235 0.75909 1.90697 1.68424 1.34378 1.51496 1.45985 1.06184 1.10405 1.73498 1.20253 0.87835 0.85633 1.01746 1.20593 0.93531 1.04294 0.95673 1.22986 0.97062 0.97877 0.98209 1.19399 0.88031 0.97828 0.86626 1.44370 1.21655 1.65017 1.02921 1.19490 0.91413 1.27796 1.00050 0.91352 1.25842 1.00331 1.00728 0.97902 1.70128 1.35104 1.43184 1.10254 0.85237 0.79570 0.78768 0.76645 1.21015 1.21977 1.19653 1.21179 0.91020 0.94519 0.91895 1.20727 0.97191 1.01007 0.93355 1.20060 0.92006 0.96569 0.95983 1.21064 0.99868 0.93876 1.02714 0.90294 0.89700 0.90748 0.82757 0.82876 0.84493 0.75373 0.91940 0.91205 0.87098 0.96686 0.92494 0.94087 0.95293 0.92224 0.91816 0.89581 0.91660 0.89874 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.59 71.24 0.68 -0.55 16 2 C -0.11 -1.74 5.87 -19.90 -0.12 -1.86 16 3 C -0.09 -1.22 9.69 22.33 0.22 -1.01 16 4 C -0.13 -1.93 10.03 22.23 0.22 -1.70 16 5 C -0.09 -1.74 9.53 22.52 0.21 -1.53 16 6 C -0.16 -3.73 5.87 -20.09 -0.12 -3.85 16 7 C 0.55 15.51 7.70 86.79 0.67 16.18 16 8 O -0.57 -19.19 13.34 -3.90 -0.05 -19.24 16 9 N -0.71 -18.20 5.50 -469.67 -2.58 -20.78 16 10 C 0.17 4.83 5.66 85.63 0.48 5.32 16 11 C -0.14 -4.57 5.22 -15.14 -0.08 -4.65 16 12 C -0.14 -5.28 9.47 27.11 0.26 -5.02 16 13 C 0.21 9.93 5.18 85.42 0.44 10.37 16 14 N -0.62 -30.69 3.00 -703.03 -2.11 -32.80 16 15 C -0.26 -14.11 9.70 84.03 0.82 -13.30 16 16 H 0.07 3.64 7.85 -2.91 -0.02 3.62 16 17 C -0.05 -2.97 5.11 84.86 0.43 -2.53 16 18 N -0.94 -55.23 10.99 21.65 0.24 -54.99 16 19 Si 0.97 44.91 29.57 68.60 2.03 46.94 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C 0.14 5.52 6.59 86.32 0.57 6.08 16 24 C -0.08 -2.72 5.95 29.71 0.18 -2.55 16 25 C -0.05 -0.99 5.91 -19.61 -0.12 -1.11 16 26 C -0.12 -2.61 8.43 71.23 0.60 -2.01 16 27 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 29 H 0.07 0.77 5.88 -2.39 -0.01 0.76 16 30 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 31 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 32 H 0.14 2.16 6.45 -2.91 -0.02 2.14 16 33 H 0.41 9.04 6.54 -92.71 -0.61 8.43 16 34 H 0.06 1.88 7.78 -2.39 -0.02 1.87 16 35 H 0.07 2.02 8.11 -2.38 -0.02 2.00 16 36 H 0.11 3.75 7.73 -2.91 -0.02 3.73 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 3.12 6.48 -2.39 -0.02 3.11 16 39 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.06 2.30 7.96 -2.39 -0.02 2.28 16 42 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 44 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.08 1.35 5.71 -2.39 -0.01 1.33 16 46 H 0.07 1.91 5.84 -2.38 -0.01 1.90 16 Total: -1.00 -68.14 366.93 3.26 -64.88 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.38 Total: 19.69 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 5.35 Total: -3.70 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -4.45 Total: -108.57 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.05 Total: -19.24 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -68.14 3.26 -64.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001420157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.441 kcal (2) G-P(sol) polarization free energy of solvation -68.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds