Wall clock time and date at job start Tue Mar 31 2020 10:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38384 * 119.85488 * 2 1 4 4 C 1.37931 * 120.14665 * 179.70347 * 3 2 1 5 5 C 1.39591 * 119.85599 * 0.02810 * 4 3 2 6 6 C 1.47852 * 120.14535 * 179.97438 * 5 4 3 7 7 O 1.21550 * 119.99877 * 173.43791 * 6 5 4 8 8 N 1.34775 * 119.99585 * 353.42892 * 6 5 4 9 9 C 1.46505 * 119.99479 * 180.02562 * 8 6 5 10 10 C 1.50692 * 109.47021 * 179.97438 * 9 8 6 11 11 C 1.29462 * 117.69530 * 94.99984 * 10 9 8 12 12 C 1.50320 * 123.65256 * 180.86129 * 11 10 9 13 13 N 1.47004 * 109.16606 * 349.02068 * 12 11 10 14 14 C 1.36940 * 121.37792 * 222.97303 * 13 12 11 15 15 H 1.07995 * 120.00574 * 152.63578 * 14 13 12 16 16 C 1.38815 * 119.99614 * 332.63763 * 14 13 12 17 17 N 1.31617 * 119.99912 * 349.80280 * 16 14 13 18 18 Si 1.86798 * 119.99904 * 169.80520 * 16 14 13 19 19 H 1.48498 * 109.47395 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47232 * 119.99882 * 18 16 14 21 21 H 1.48504 * 109.47153 * 239.99747 * 18 16 14 22 22 C 1.47341 * 117.25477 * 42.94791 * 13 12 11 23 23 C 1.49971 * 117.69690 * 274.73908 * 10 9 8 24 24 C 1.39554 * 119.70959 * 359.97438 * 5 4 3 25 25 C 1.50707 * 120.07251 * 179.97438 * 24 5 4 26 26 C 1.37982 * 119.85355 * 359.97438 * 24 5 4 27 27 H 1.08998 * 109.47639 * 89.99907 * 1 2 3 28 28 H 1.08999 * 109.46901 * 209.99411 * 1 2 3 29 29 H 1.08996 * 109.47506 * 329.99378 * 1 2 3 30 30 H 1.08002 * 119.92280 * 359.73110 * 3 2 1 31 31 H 1.08001 * 120.06930 * 180.02562 * 4 3 2 32 32 H 0.96996 * 120.00294 * 0.02562 * 8 6 5 33 33 H 1.09000 * 109.47045 * 299.99851 * 9 8 6 34 34 H 1.08999 * 109.46806 * 60.00014 * 9 8 6 35 35 H 1.08000 * 118.17037 * 0.87723 * 11 10 9 36 36 H 1.08998 * 109.52500 * 108.92717 * 12 11 10 37 37 H 1.08996 * 109.51984 * 229.11614 * 12 11 10 38 38 H 0.97001 * 120.00086 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.77186 * 57.80714 * 22 13 12 40 40 H 1.08989 * 109.78214 * 178.61931 * 22 13 12 41 41 H 1.09001 * 109.31524 * 281.29418 * 23 10 9 42 42 H 1.09006 * 109.31071 * 40.71796 * 23 10 9 43 43 H 1.08995 * 109.46968 * 83.37506 * 25 24 5 44 44 H 1.09007 * 109.46723 * 203.37552 * 25 24 5 45 45 H 1.09000 * 109.46833 * 323.36990 * 25 24 5 46 46 H 1.08002 * 119.92399 * 180.02562 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5751 1.2072 0.0062 5 6 4.2762 0.0001 0.0118 6 6 5.7547 0.0002 0.0179 7 8 6.3620 -1.0452 0.1431 8 7 6.4290 1.1595 -0.1156 9 6 7.8940 1.1595 -0.1101 10 6 8.3970 2.5705 -0.2744 11 6 8.6877 3.2343 0.7983 12 6 9.1812 4.6542 0.7911 13 7 9.5192 5.0407 -0.5863 14 6 10.6578 5.7468 -0.8697 15 1 11.1252 5.6516 -1.8386 16 6 11.2112 6.5850 0.0885 17 7 10.5427 6.8584 1.1887 18 14 12.9047 7.3249 -0.1838 19 1 13.4420 6.8645 -1.4893 20 1 12.8033 8.8064 -0.1844 21 1 13.8153 6.8915 0.9063 22 6 8.5827 4.6366 -1.6496 23 6 8.5311 3.1047 -1.6693 24 6 3.5754 -1.2067 0.0118 25 6 4.3240 -2.5147 0.0173 26 6 2.1956 -1.1997 0.0066 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3634 0.8899 0.5139 30 1 1.6522 2.1334 -0.0044 31 1 4.1115 2.1446 0.0066 32 1 5.9444 1.9938 -0.2153 33 1 8.2538 0.7529 0.8350 34 1 8.2604 0.5454 -0.9329 35 1 8.5693 2.7404 1.7514 36 1 8.4014 5.3129 1.1733 37 1 10.0678 4.7348 1.4200 38 1 10.9292 7.4444 1.8581 39 1 7.5918 5.0402 -1.4412 40 1 8.9367 5.0047 -2.6124 41 1 9.4448 2.7152 -2.1183 42 1 7.6754 2.7822 -2.2627 43 1 4.6036 -2.7689 1.0396 44 1 3.6872 -3.2994 -0.3912 45 1 5.2225 -2.4216 -0.5928 46 1 1.6521 -2.1330 0.0070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001422969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:46 Heat of formation + Delta-G solvation = 18.856632 kcal Electronic energy + Delta-G solvation = -25308.776754 eV Core-core repulsion = 21777.704860 eV Total energy + Delta-G solvation = -3531.071895 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50243 -38.75914 -37.68773 -35.09478 -33.54564 -33.19938 -32.10280 -30.81907 -29.74680 -28.06246 -27.38374 -26.42837 -24.16940 -22.88429 -22.73259 -21.56863 -20.96180 -20.30965 -18.11600 -17.57781 -16.35122 -15.81262 -15.45963 -15.23519 -15.17093 -15.02331 -14.85342 -14.17995 -13.98213 -13.72082 -13.60132 -13.37278 -13.28774 -13.25315 -12.86975 -12.69165 -12.26543 -12.09049 -12.03920 -11.91767 -11.78686 -11.58036 -11.35569 -11.24282 -10.90836 -10.79382 -10.40069 -10.30863 -9.87651 -9.70932 -9.58256 -9.10342 -9.03483 -8.73034 -8.71797 -8.08504 -6.72780 -5.82594 -3.25793 0.66501 1.12925 2.57433 2.78835 3.35441 3.43039 3.44990 3.52686 3.65231 4.45688 4.46218 4.49588 4.63096 4.74623 4.98187 5.04488 5.14364 5.23902 5.31687 5.34085 5.37213 5.39616 5.53077 5.55878 5.66986 5.72333 5.74487 5.81600 5.93306 6.03617 6.05450 6.08030 6.15317 6.26284 6.30906 6.38410 6.46814 6.55026 6.68006 6.71794 6.84835 7.14946 7.24149 7.30869 7.58534 7.71505 7.80231 8.24291 8.37449 9.17437 9.78588 10.37990 11.27712 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026025 B = 0.002469 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.643875 B =11338.574677 C =11908.233581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.060 4.060 3 C -0.136 4.136 4 C -0.076 4.076 5 C -0.144 4.144 6 C 0.553 3.447 7 O -0.539 6.539 8 N -0.716 5.716 9 C 0.158 3.842 10 C -0.168 4.168 11 C -0.124 4.124 12 C 0.195 3.805 13 N -0.595 5.595 14 C -0.246 4.246 15 H 0.068 0.932 16 C 0.000 4.000 17 N -0.911 5.911 18 Si 0.906 3.094 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.144 3.856 23 C -0.090 4.090 24 C -0.020 4.020 25 C -0.121 4.121 26 C -0.135 4.135 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.400 0.600 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.093 0.907 38 H 0.254 0.746 39 H 0.023 0.977 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.096 0.904 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.692 -13.983 -2.052 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.060 4.060 3 C -0.154 4.154 4 C -0.095 4.095 5 C -0.147 4.147 6 C 0.342 3.658 7 O -0.418 6.418 8 N -0.367 5.367 9 C 0.036 3.964 10 C -0.169 4.169 11 C -0.144 4.144 12 C 0.070 3.930 13 N -0.319 5.319 14 C -0.375 4.375 15 H 0.086 0.914 16 C -0.198 4.198 17 N -0.556 5.556 18 Si 0.736 3.264 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.216 1.216 22 C 0.017 3.983 23 C -0.129 4.129 24 C -0.021 4.021 25 C -0.177 4.177 26 C -0.153 4.153 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.236 0.764 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.114 0.886 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.140 -14.600 -1.844 23.359 hybrid contribution 0.621 0.898 0.024 1.092 sum -17.519 -13.703 -1.821 22.316 Atomic orbital electron populations 1.20856 0.90930 1.03056 1.02613 1.20121 0.96268 0.93113 0.96510 1.20963 0.93853 0.97826 1.02768 1.21341 0.94567 0.97088 0.96481 1.19833 0.92986 0.93942 1.07931 1.18290 0.86983 0.83837 0.76739 1.90706 1.70084 1.30931 1.50082 1.46146 1.07866 1.09147 1.73535 1.20472 0.78390 0.95838 1.01741 1.20499 1.05732 0.94336 0.96296 1.23326 0.95358 0.99215 0.96549 1.19764 0.99554 0.86156 0.87551 1.44100 1.22782 1.63451 1.01527 1.19217 1.00206 1.17780 1.00338 0.91435 1.25102 0.99197 0.97499 0.97978 1.69972 1.36735 1.38958 1.09954 0.86150 0.83909 0.78675 0.77623 1.20273 1.21658 1.21587 1.20998 0.93170 0.90999 0.93102 1.20792 1.00268 0.99015 0.92851 1.20044 0.93334 0.94929 0.93764 1.21079 1.00821 0.92077 1.03687 1.20919 0.93155 0.97815 1.03419 0.90802 0.91339 0.91220 0.85431 0.85390 0.76446 0.91554 0.91502 0.88800 0.94061 0.88895 0.93609 0.95894 0.92451 0.91716 0.92944 0.90689 0.92619 0.88579 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.06 -0.51 5.89 -104.53 -0.62 -1.13 16 3 C -0.14 -1.22 9.68 -39.64 -0.38 -1.61 16 4 C -0.08 -0.78 9.52 -39.19 -0.37 -1.16 16 5 C -0.14 -1.76 5.87 -104.97 -0.62 -2.38 16 6 C 0.55 7.91 7.70 -12.33 -0.09 7.81 16 7 O -0.54 -9.02 13.36 5.32 0.07 -8.95 16 8 N -0.72 -9.64 5.50 -62.43 -0.34 -9.99 16 9 C 0.16 2.38 5.66 -5.19 -0.03 2.35 16 10 C -0.17 -2.85 5.22 -101.00 -0.53 -3.37 16 11 C -0.12 -2.32 9.47 -35.78 -0.34 -2.66 16 12 C 0.19 4.53 5.18 -5.10 -0.03 4.51 16 13 N -0.60 -14.65 3.00 -173.57 -0.52 -15.17 16 14 C -0.25 -6.66 9.70 -15.06 -0.15 -6.80 16 15 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 16 C 0.00 0.01 5.11 -17.43 -0.09 -0.08 16 17 N -0.91 -25.92 11.01 55.49 0.61 -25.31 16 18 Si 0.91 21.54 29.57 -169.99 -5.03 16.52 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.14 2.91 6.59 -3.43 -0.02 2.89 16 23 C -0.09 -1.55 5.95 -28.08 -0.17 -1.72 16 24 C -0.02 -0.22 5.91 -104.22 -0.62 -0.84 16 25 C -0.12 -1.33 8.72 36.01 0.31 -1.01 16 26 C -0.14 -1.26 9.31 -39.64 -0.37 -1.63 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 29 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.13 1.13 6.46 -52.49 -0.34 0.79 16 32 H 0.40 4.76 6.54 -40.82 -0.27 4.50 16 33 H 0.07 1.03 7.78 -51.93 -0.40 0.63 16 34 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 35 H 0.09 1.59 7.73 -52.49 -0.41 1.19 16 36 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.09 2.43 6.50 -51.93 -0.34 2.09 16 38 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 1.14 7.96 -51.94 -0.41 0.72 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.48 8.04 -51.93 -0.42 0.06 16 45 H 0.10 1.26 5.87 -51.93 -0.30 0.95 16 46 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -30.67 371.52 -10.43 -41.10 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.08 Total: 3.36 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -3.74 Total: -7.16 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.25 Total: -50.47 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.07 Total: -8.95 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.67 -10.43 -41.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001422969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.953 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds