Wall clock time and date at job start Tue Mar 31 2020 10:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38384 * 119.85488 * 2 1 4 4 C 1.37931 * 120.14665 * 179.70347 * 3 2 1 5 5 C 1.39591 * 119.85599 * 0.02810 * 4 3 2 6 6 C 1.47852 * 120.14535 * 179.97438 * 5 4 3 7 7 O 1.21550 * 119.99877 * 173.43791 * 6 5 4 8 8 N 1.34775 * 119.99585 * 353.42892 * 6 5 4 9 9 C 1.46505 * 119.99479 * 180.02562 * 8 6 5 10 10 C 1.50692 * 109.47021 * 179.97438 * 9 8 6 11 11 C 1.29462 * 117.69530 * 94.99984 * 10 9 8 12 12 C 1.50320 * 123.65256 * 180.86129 * 11 10 9 13 13 N 1.47004 * 109.16606 * 349.02068 * 12 11 10 14 14 C 1.36940 * 121.37792 * 222.97303 * 13 12 11 15 15 H 1.07995 * 120.00574 * 152.63578 * 14 13 12 16 16 C 1.38815 * 119.99614 * 332.63763 * 14 13 12 17 17 N 1.31617 * 119.99912 * 349.80280 * 16 14 13 18 18 Si 1.86798 * 119.99904 * 169.80520 * 16 14 13 19 19 H 1.48498 * 109.47395 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47232 * 119.99882 * 18 16 14 21 21 H 1.48504 * 109.47153 * 239.99747 * 18 16 14 22 22 C 1.47341 * 117.25477 * 42.94791 * 13 12 11 23 23 C 1.49971 * 117.69690 * 274.73908 * 10 9 8 24 24 C 1.39554 * 119.70959 * 359.97438 * 5 4 3 25 25 C 1.50707 * 120.07251 * 179.97438 * 24 5 4 26 26 C 1.37982 * 119.85355 * 359.97438 * 24 5 4 27 27 H 1.08998 * 109.47639 * 89.99907 * 1 2 3 28 28 H 1.08999 * 109.46901 * 209.99411 * 1 2 3 29 29 H 1.08996 * 109.47506 * 329.99378 * 1 2 3 30 30 H 1.08002 * 119.92280 * 359.73110 * 3 2 1 31 31 H 1.08001 * 120.06930 * 180.02562 * 4 3 2 32 32 H 0.96996 * 120.00294 * 0.02562 * 8 6 5 33 33 H 1.09000 * 109.47045 * 299.99851 * 9 8 6 34 34 H 1.08999 * 109.46806 * 60.00014 * 9 8 6 35 35 H 1.08000 * 118.17037 * 0.87723 * 11 10 9 36 36 H 1.08998 * 109.52500 * 108.92717 * 12 11 10 37 37 H 1.08996 * 109.51984 * 229.11614 * 12 11 10 38 38 H 0.97001 * 120.00086 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.77186 * 57.80714 * 22 13 12 40 40 H 1.08989 * 109.78214 * 178.61931 * 22 13 12 41 41 H 1.09001 * 109.31524 * 281.29418 * 23 10 9 42 42 H 1.09006 * 109.31071 * 40.71796 * 23 10 9 43 43 H 1.08995 * 109.46968 * 83.37506 * 25 24 5 44 44 H 1.09007 * 109.46723 * 203.37552 * 25 24 5 45 45 H 1.09000 * 109.46833 * 323.36990 * 25 24 5 46 46 H 1.08002 * 119.92399 * 180.02562 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5751 1.2072 0.0062 5 6 4.2762 0.0001 0.0118 6 6 5.7547 0.0002 0.0179 7 8 6.3620 -1.0452 0.1431 8 7 6.4290 1.1595 -0.1156 9 6 7.8940 1.1595 -0.1101 10 6 8.3970 2.5705 -0.2744 11 6 8.6877 3.2343 0.7983 12 6 9.1812 4.6542 0.7911 13 7 9.5192 5.0407 -0.5863 14 6 10.6578 5.7468 -0.8697 15 1 11.1252 5.6516 -1.8386 16 6 11.2112 6.5850 0.0885 17 7 10.5427 6.8584 1.1887 18 14 12.9047 7.3249 -0.1838 19 1 13.4420 6.8645 -1.4893 20 1 12.8033 8.8064 -0.1844 21 1 13.8153 6.8915 0.9063 22 6 8.5827 4.6366 -1.6496 23 6 8.5311 3.1047 -1.6693 24 6 3.5754 -1.2067 0.0118 25 6 4.3240 -2.5147 0.0173 26 6 2.1956 -1.1997 0.0066 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3634 0.8899 0.5139 30 1 1.6522 2.1334 -0.0044 31 1 4.1115 2.1446 0.0066 32 1 5.9444 1.9938 -0.2153 33 1 8.2538 0.7529 0.8350 34 1 8.2604 0.5454 -0.9329 35 1 8.5693 2.7404 1.7514 36 1 8.4014 5.3129 1.1733 37 1 10.0678 4.7348 1.4200 38 1 10.9292 7.4444 1.8581 39 1 7.5918 5.0402 -1.4412 40 1 8.9367 5.0047 -2.6124 41 1 9.4448 2.7152 -2.1183 42 1 7.6754 2.7822 -2.2627 43 1 4.6036 -2.7689 1.0396 44 1 3.6872 -3.2994 -0.3912 45 1 5.2225 -2.4216 -0.5928 46 1 1.6521 -2.1330 0.0070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001422969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:45 Heat of formation + Delta-G solvation = 2.486463 kcal Electronic energy + Delta-G solvation = -25309.486618 eV Core-core repulsion = 21777.704860 eV Total energy + Delta-G solvation = -3531.781758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.45142 -39.82026 -39.11793 -36.51577 -34.72335 -34.27843 -33.21557 -32.34235 -31.42342 -29.11902 -28.17771 -27.73359 -25.77703 -24.39341 -23.63660 -22.97795 -22.13887 -21.23694 -19.54512 -18.97615 -17.45696 -17.33117 -17.01393 -16.44485 -16.09224 -16.00471 -15.92685 -15.56009 -15.34144 -15.17151 -14.84722 -14.49177 -14.35343 -14.07595 -13.96172 -13.87811 -13.57153 -13.35762 -13.25442 -12.92316 -12.79446 -12.74213 -12.63647 -12.62292 -12.49698 -12.20330 -12.09009 -11.93059 -11.73623 -11.26763 -10.77920 -10.69506 -10.18075 -9.78877 -9.66751 -9.54560 -8.70908 -7.88878 -5.34618 -0.14154 0.39686 1.15929 1.46015 1.47724 1.57792 1.83941 2.38338 2.49980 2.82435 3.29274 3.60965 3.69737 3.78535 3.87153 3.91475 3.96121 3.99849 4.36892 4.39637 4.42565 4.52417 4.61408 4.66188 4.72592 4.73908 4.81192 4.81684 4.84088 4.88323 4.91055 5.04026 5.09375 5.18314 5.21562 5.27044 5.32691 5.37355 5.43900 5.48405 5.59721 5.60138 5.61299 5.75377 5.97570 6.15176 6.35387 6.51653 7.13764 7.17081 7.82249 8.37271 9.19525 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026025 B = 0.002469 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.643875 B =11338.574677 C =11908.233581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.056 4.056 3 C -0.140 4.140 4 C -0.080 4.080 5 C -0.168 4.168 6 C 0.552 3.448 7 O -0.569 6.569 8 N -0.710 5.710 9 C 0.168 3.832 10 C -0.140 4.140 11 C -0.141 4.141 12 C 0.206 3.794 13 N -0.616 5.616 14 C -0.256 4.256 15 H 0.069 0.931 16 C -0.053 4.053 17 N -0.940 5.940 18 Si 0.969 3.031 19 H -0.267 1.267 20 H -0.291 1.291 21 H -0.292 1.292 22 C 0.139 3.861 23 C -0.084 4.084 24 C -0.036 4.036 25 C -0.116 4.116 26 C -0.138 4.138 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.151 0.849 31 H 0.139 0.861 32 H 0.409 0.591 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.016 0.984 37 H 0.056 0.944 38 H 0.250 0.750 39 H 0.029 0.971 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.797 -14.918 -3.172 25.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.057 4.057 3 C -0.158 4.158 4 C -0.099 4.099 5 C -0.171 4.171 6 C 0.342 3.658 7 O -0.451 6.451 8 N -0.361 5.361 9 C 0.045 3.955 10 C -0.141 4.141 11 C -0.162 4.162 12 C 0.081 3.919 13 N -0.340 5.340 14 C -0.386 4.386 15 H 0.087 0.913 16 C -0.248 4.248 17 N -0.587 5.587 18 Si 0.798 3.202 19 H -0.191 1.191 20 H -0.218 1.218 21 H -0.219 1.219 22 C 0.014 3.986 23 C -0.123 4.123 24 C -0.037 4.037 25 C -0.172 4.172 26 C -0.156 4.156 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.168 0.832 31 H 0.156 0.844 32 H 0.246 0.754 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.272 -15.539 -2.992 25.717 hybrid contribution 1.147 1.157 0.306 1.658 sum -19.125 -14.382 -2.685 24.079 Atomic orbital electron populations 1.20930 0.88651 1.04162 1.03617 1.20527 0.97945 0.92629 0.94551 1.21299 0.93426 0.99118 1.01947 1.21510 0.95377 0.96762 0.96221 1.19780 0.91652 0.95233 1.10446 1.18656 0.87986 0.83297 0.75878 1.90695 1.70916 1.31938 1.51540 1.45983 1.07053 1.09598 1.73496 1.20246 0.79438 0.94051 1.01727 1.20599 1.03055 0.94751 0.95674 1.22987 0.97680 0.97255 0.98233 1.19392 0.97344 0.88534 0.86590 1.44378 1.23181 1.63590 1.02814 1.19529 1.01206 1.17596 1.00310 0.91340 1.25847 1.02563 0.98413 0.97979 1.70135 1.38122 1.39730 1.10671 0.85167 0.79849 0.77531 0.77684 1.19118 1.21780 1.21869 1.21179 0.92447 0.93065 0.91916 1.20729 1.01704 0.96521 0.93328 1.20218 0.94404 0.94610 0.94514 1.20983 1.00332 0.93054 1.02804 1.21182 0.92351 0.99255 1.02806 0.89670 0.90264 0.90187 0.83173 0.84374 0.75396 0.91950 0.91209 0.87100 0.96676 0.92555 0.94097 0.95287 0.92229 0.91808 0.89577 0.91554 0.90334 0.90963 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.01 71.23 0.71 -0.21 16 2 C -0.06 -0.80 5.89 -19.81 -0.12 -0.92 16 3 C -0.14 -2.13 9.68 22.23 0.22 -1.92 16 4 C -0.08 -1.50 9.52 22.52 0.21 -1.29 16 5 C -0.17 -3.96 5.87 -20.09 -0.12 -4.08 16 6 C 0.55 15.47 7.70 86.79 0.67 16.14 16 7 O -0.57 -19.16 13.36 -3.87 -0.05 -19.21 16 8 N -0.71 -18.16 5.50 -469.71 -2.58 -20.75 16 9 C 0.17 4.83 5.66 85.63 0.48 5.31 16 10 C -0.14 -4.56 5.22 -15.15 -0.08 -4.64 16 11 C -0.14 -5.28 9.47 27.10 0.26 -5.03 16 12 C 0.21 9.93 5.18 85.42 0.44 10.37 16 13 N -0.62 -30.65 3.00 -703.04 -2.11 -32.76 16 14 C -0.26 -14.04 9.70 84.03 0.82 -13.22 16 15 H 0.07 3.65 7.85 -2.91 -0.02 3.63 16 16 C -0.05 -2.96 5.11 84.86 0.43 -2.53 16 17 N -0.94 -55.20 11.01 21.65 0.24 -54.96 16 18 Si 0.97 44.92 29.57 68.60 2.03 46.95 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 C 0.14 5.51 6.59 86.32 0.57 6.08 16 23 C -0.08 -2.72 5.95 29.72 0.18 -2.54 16 24 C -0.04 -0.79 5.91 -19.61 -0.12 -0.91 16 25 C -0.12 -2.50 8.72 71.24 0.62 -1.88 16 26 C -0.14 -2.26 9.31 22.23 0.21 -2.05 16 27 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 29 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 30 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 31 H 0.14 2.18 6.46 -2.91 -0.02 2.16 16 32 H 0.41 9.00 6.54 -92.71 -0.61 8.39 16 33 H 0.06 1.88 7.78 -2.39 -0.02 1.86 16 34 H 0.07 2.01 8.11 -2.39 -0.02 1.99 16 35 H 0.11 3.75 7.73 -2.91 -0.02 3.72 16 36 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 3.09 6.50 -2.39 -0.02 3.07 16 38 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 39 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.06 2.30 7.96 -2.39 -0.02 2.28 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 1.26 8.04 -2.38 -0.02 1.24 16 45 H 0.07 1.92 5.87 -2.39 -0.01 1.91 16 46 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -67.85 371.52 3.28 -64.57 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.37 Total: 19.47 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 5.39 Total: -3.31 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -4.45 Total: -108.47 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.05 Total: -19.21 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -67.85 3.28 -64.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001422969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.056 kcal (2) G-P(sol) polarization free energy of solvation -67.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds