Wall clock time and date at job start Tue Mar 31 2020 11:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50707 * 115.55861 * 2 1 4 4 C 1.38232 * 120.00051 * 79.58774 * 3 2 1 5 5 C 1.38236 * 119.99576 * 179.76242 * 4 3 2 6 6 C 1.38238 * 120.00180 * 0.51041 * 5 4 3 7 7 C 1.38234 * 119.99819 * 359.73957 * 6 5 4 8 8 C 1.38236 * 120.00251 * 0.02562 * 7 6 5 9 9 C 1.53002 * 117.50054 * 214.31046 * 2 1 3 10 10 C 1.52998 * 117.49744 * 145.68599 * 2 1 3 11 11 H 1.08994 * 117.50270 * 359.97438 * 10 2 1 12 12 C 1.50705 * 117.49519 * 214.97755 * 10 2 1 13 13 O 1.21275 * 120.00445 * 271.66982 * 12 10 2 14 14 N 1.34782 * 119.99409 * 91.67631 * 12 10 2 15 15 C 1.46504 * 119.99593 * 179.97438 * 14 12 10 16 16 H 1.08998 * 110.88753 * 31.11676 * 15 14 12 17 17 C 1.55154 * 111.00666 * 154.99611 * 15 14 12 18 18 C 1.54330 * 102.94211 * 82.57024 * 17 15 14 19 19 N 1.47030 * 107.26778 * 22.19452 * 18 17 15 20 20 C 1.36933 * 125.64531 * 181.02218 * 19 18 17 21 21 H 1.08001 * 119.99910 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00405 * 0.02815 * 20 19 18 23 23 N 1.31618 * 119.99772 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00318 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47136 * 179.97438 * 24 22 20 26 26 H 1.48495 * 109.46842 * 300.00016 * 24 22 20 27 27 H 1.48504 * 109.46642 * 59.99759 * 24 22 20 28 28 C 1.47427 * 108.70390 * 1.28528 * 19 18 17 29 29 H 1.09000 * 109.47258 * 274.31182 * 1 2 3 30 30 H 1.08998 * 109.47213 * 34.31380 * 1 2 3 31 31 H 1.09003 * 109.47233 * 154.31260 * 1 2 3 32 32 H 1.07994 * 120.00112 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.99866 * 180.22436 * 5 4 3 34 34 H 1.07998 * 120.00066 * 179.72081 * 6 5 4 35 35 H 1.08002 * 119.99761 * 179.97438 * 7 6 5 36 36 H 1.08002 * 120.00290 * 179.97438 * 8 7 6 37 37 H 1.08994 * 117.49632 * 145.02010 * 9 2 1 38 38 H 1.08995 * 117.49725 * 359.97438 * 9 2 1 39 39 H 0.96990 * 120.00437 * 359.97438 * 14 12 10 40 40 H 1.09003 * 110.71954 * 324.21224 * 17 15 14 41 41 H 1.08991 * 110.72196 * 200.93429 * 17 15 14 42 42 H 1.09004 * 109.88266 * 262.77996 * 18 17 15 43 43 H 1.08994 * 109.88525 * 141.60994 * 18 17 15 44 44 H 0.97000 * 119.99944 * 180.02562 * 23 22 20 45 45 H 1.08997 * 110.36263 * 94.48107 * 28 19 18 46 46 H 1.08995 * 110.36557 * 216.80389 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1802 1.3596 0.0000 4 6 2.2832 2.0765 1.1774 5 6 2.8840 3.3214 1.1782 6 6 3.3724 3.8540 -0.0003 7 6 3.2647 3.1393 -1.1786 8 6 2.6682 1.8922 -1.1786 9 6 2.2365 -1.1210 -0.7650 10 6 2.2364 -1.1209 0.7651 11 1 1.6113 -1.8581 1.2687 12 6 3.5293 -0.7810 1.4608 13 8 4.5811 -0.8707 0.8638 14 7 3.5165 -0.3773 2.7467 15 6 4.7734 -0.0473 3.4233 16 1 5.5015 0.3521 2.7174 17 6 4.5320 0.9429 4.5931 18 6 4.0882 0.0160 5.7446 19 7 4.5900 -1.3316 5.4381 20 6 4.3924 -2.4498 6.2034 21 1 4.8044 -3.3979 5.8906 22 6 3.6627 -2.3649 7.3811 23 7 3.1610 -1.2094 7.7626 24 14 3.3926 -3.8905 8.4247 25 1 2.5886 -3.5355 9.6216 26 1 2.6696 -4.9137 7.6277 27 1 4.7057 -4.4349 8.8546 28 6 5.3462 -1.2783 4.1737 29 1 -0.3634 0.0773 1.0247 30 1 -0.3633 0.8488 -0.5793 31 1 -0.3634 -0.9261 -0.4455 32 1 1.8974 1.6625 2.0972 33 1 2.9678 3.8800 2.0988 34 1 3.8377 4.8286 -0.0005 35 1 3.6458 3.5556 -2.0994 36 1 2.5837 1.3340 -2.0993 37 1 3.1715 -0.8751 -1.2682 38 1 1.6113 -1.8587 -1.2679 39 1 2.6753 -0.3053 3.2241 40 1 3.7423 1.6511 4.3422 41 1 5.4526 1.4658 4.8520 42 1 3.0003 0.0006 5.8098 43 1 4.5132 0.3646 6.6858 44 1 2.6514 -1.1500 8.5858 45 1 6.4093 -1.1431 4.3730 46 1 5.1805 -2.1864 3.5940 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015331837.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:24 Heat of formation + Delta-G solvation = 37.787597 kcal Electronic energy + Delta-G solvation = -26769.406688 eV Core-core repulsion = 23239.155701 eV Total energy + Delta-G solvation = -3530.250986 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.46527 -38.90684 -37.55879 -36.43972 -33.65085 -31.75727 -30.90862 -30.71721 -29.22392 -28.72331 -27.28604 -24.75884 -23.80316 -23.20214 -22.38264 -20.41666 -20.04071 -19.77894 -19.38194 -17.54548 -16.79277 -16.39702 -15.74381 -15.32226 -14.95400 -14.76621 -14.62667 -14.15863 -13.90029 -13.66398 -13.48662 -13.39256 -13.15269 -12.80808 -12.76406 -12.32875 -12.28365 -11.91319 -11.81520 -11.78738 -11.18437 -11.10635 -10.95547 -10.89070 -10.67734 -10.50293 -10.29388 -10.15600 -10.04720 -9.93514 -9.66730 -9.41038 -8.92344 -8.74100 -8.68778 -8.46073 -6.81521 -5.71901 -3.04234 1.31684 1.40418 2.82707 3.40078 3.44742 3.45696 3.46216 3.70010 3.76040 4.44400 4.50329 4.61301 4.75674 4.90851 4.97961 4.99732 5.10738 5.23080 5.39015 5.44042 5.47906 5.49767 5.50723 5.58197 5.66266 5.66942 5.72350 5.80395 5.86537 5.93199 6.01054 6.02073 6.08146 6.24201 6.39821 6.45622 6.49963 6.51924 6.56867 6.58205 6.71389 6.97785 7.11011 7.53401 7.56705 7.79344 7.97529 8.25116 8.63923 9.22354 9.82330 10.48498 11.39932 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017839 B = 0.003751 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.212070 B = 7463.659655 C = 7976.449460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.071 4.071 3 C -0.050 4.050 4 C -0.099 4.099 5 C -0.116 4.116 6 C -0.122 4.122 7 C -0.123 4.123 8 C -0.106 4.106 9 C -0.135 4.135 10 C -0.175 4.175 11 H 0.129 0.871 12 C 0.547 3.453 13 O -0.548 6.548 14 N -0.697 5.697 15 C 0.131 3.869 16 H 0.087 0.913 17 C -0.152 4.152 18 C 0.177 3.823 19 N -0.603 5.603 20 C -0.225 4.225 21 H 0.076 0.924 22 C -0.008 4.008 23 N -0.924 5.924 24 Si 0.911 3.089 25 H -0.290 1.290 26 H -0.286 1.286 27 H -0.286 1.286 28 C 0.125 3.875 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.401 0.599 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.252 0.748 45 H 0.026 0.974 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.279 8.614 -17.159 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.071 4.071 3 C -0.050 4.050 4 C -0.118 4.118 5 C -0.134 4.134 6 C -0.140 4.140 7 C -0.141 4.141 8 C -0.124 4.124 9 C -0.172 4.172 10 C -0.196 4.196 11 H 0.147 0.853 12 C 0.333 3.667 13 O -0.426 6.426 14 N -0.346 5.346 15 C 0.025 3.975 16 H 0.105 0.895 17 C -0.191 4.191 18 C 0.052 3.948 19 N -0.330 5.330 20 C -0.353 4.353 21 H 0.093 0.907 22 C -0.204 4.204 23 N -0.572 5.572 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.213 1.213 27 H -0.212 1.212 28 C -0.002 4.002 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.236 0.764 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.044 0.956 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.624 8.499 -17.351 19.867 hybrid contribution -0.484 -0.879 1.070 1.466 sum -5.108 7.620 -16.281 18.688 Atomic orbital electron populations 1.21357 0.90549 1.02322 1.02589 1.20221 0.94617 0.87857 1.04415 1.18974 0.98596 0.93801 0.93667 1.20993 0.98744 0.94509 0.97509 1.21132 0.98358 0.95812 0.98140 1.21135 1.00071 0.99906 0.92913 1.21079 0.99844 0.95031 0.98142 1.20938 0.98288 0.95614 0.97582 1.23166 1.02552 0.99368 0.92139 1.22490 0.98146 1.02959 0.95965 0.85322 1.19402 0.89278 0.76340 0.81722 1.90650 1.32557 1.53342 1.66002 1.45727 1.10318 1.67088 1.11452 1.22107 0.85702 0.96494 0.93150 0.89501 1.23204 1.01335 0.97839 0.96745 1.21156 0.98018 0.82713 0.92872 1.44466 1.60985 1.05615 1.21955 1.19013 1.28064 0.87089 1.01163 0.90663 1.24758 1.00464 0.97069 0.98107 1.69940 1.40357 1.22568 1.24312 0.86213 0.77723 0.82132 0.79783 1.21631 1.21260 1.21235 1.21987 0.94440 0.95750 0.88068 0.91594 0.91716 0.91797 0.86112 0.85996 0.86329 0.86287 0.86221 0.87546 0.87798 0.76431 0.91714 0.91134 0.93654 0.93900 0.93798 0.95595 0.94040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.84 37.16 0.37 -0.60 16 2 C -0.07 -0.77 2.19 -155.66 -0.34 -1.11 16 3 C -0.05 -0.61 4.28 -104.62 -0.45 -1.06 16 4 C -0.10 -1.23 8.64 -39.58 -0.34 -1.57 16 5 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 6 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 7 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 8 C -0.11 -1.22 9.31 -39.58 -0.37 -1.59 16 9 C -0.14 -1.51 8.99 -26.73 -0.24 -1.75 16 10 C -0.17 -2.26 5.90 -91.77 -0.54 -2.80 16 11 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 12 C 0.55 9.10 5.97 -10.98 -0.07 9.03 16 13 O -0.55 -10.94 16.09 5.56 0.09 -10.85 16 14 N -0.70 -11.57 4.65 -51.61 -0.24 -11.81 16 15 C 0.13 2.39 3.43 -65.66 -0.23 2.16 16 16 H 0.09 1.59 7.54 -51.93 -0.39 1.20 16 17 C -0.15 -2.71 6.55 -24.89 -0.16 -2.87 16 18 C 0.18 4.10 5.36 -3.06 -0.02 4.09 16 19 N -0.60 -15.17 3.39 -169.93 -0.58 -15.74 16 20 C -0.22 -6.25 10.28 -15.06 -0.15 -6.41 16 21 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 22 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -26.53 10.31 55.49 0.57 -25.96 16 24 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 C 0.12 2.70 6.95 -2.41 -0.02 2.69 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 32 H 0.12 1.47 7.79 -52.49 -0.41 1.06 16 33 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.12 1.19 7.92 -52.49 -0.42 0.77 16 37 H 0.11 1.35 7.66 -51.93 -0.40 0.95 16 38 H 0.10 0.91 8.05 -51.93 -0.42 0.50 16 39 H 0.40 6.40 8.66 -40.82 -0.35 6.04 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.14 7.38 -51.93 -0.38 0.75 16 43 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -32.03 376.27 -10.69 -42.73 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.34 Total: 6.24 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.85 Total: -7.30 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.24 Total: -53.51 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.03 -10.69 -42.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015331837.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.513 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds