Wall clock time and date at job start Tue Mar 31 2020 11:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50707 * 115.55861 * 2 1 4 4 C 1.38232 * 120.00051 * 79.58774 * 3 2 1 5 5 C 1.38236 * 119.99576 * 179.76242 * 4 3 2 6 6 C 1.38238 * 120.00180 * 0.51041 * 5 4 3 7 7 C 1.38234 * 119.99819 * 359.73957 * 6 5 4 8 8 C 1.38236 * 120.00251 * 0.02562 * 7 6 5 9 9 C 1.53002 * 117.50054 * 214.31046 * 2 1 3 10 10 C 1.52998 * 117.49744 * 145.68599 * 2 1 3 11 11 H 1.08994 * 117.50270 * 359.97438 * 10 2 1 12 12 C 1.50705 * 117.49519 * 214.97755 * 10 2 1 13 13 O 1.21275 * 120.00445 * 271.66982 * 12 10 2 14 14 N 1.34782 * 119.99409 * 91.67631 * 12 10 2 15 15 C 1.46504 * 119.99593 * 179.97438 * 14 12 10 16 16 H 1.08998 * 110.88753 * 31.11676 * 15 14 12 17 17 C 1.55154 * 111.00666 * 154.99611 * 15 14 12 18 18 C 1.54330 * 102.94211 * 82.57024 * 17 15 14 19 19 N 1.47030 * 107.26778 * 22.19452 * 18 17 15 20 20 C 1.36933 * 125.64531 * 181.02218 * 19 18 17 21 21 H 1.08001 * 119.99910 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00405 * 0.02815 * 20 19 18 23 23 N 1.31618 * 119.99772 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00318 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47136 * 179.97438 * 24 22 20 26 26 H 1.48495 * 109.46842 * 300.00016 * 24 22 20 27 27 H 1.48504 * 109.46642 * 59.99759 * 24 22 20 28 28 C 1.47427 * 108.70390 * 1.28528 * 19 18 17 29 29 H 1.09000 * 109.47258 * 274.31182 * 1 2 3 30 30 H 1.08998 * 109.47213 * 34.31380 * 1 2 3 31 31 H 1.09003 * 109.47233 * 154.31260 * 1 2 3 32 32 H 1.07994 * 120.00112 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.99866 * 180.22436 * 5 4 3 34 34 H 1.07998 * 120.00066 * 179.72081 * 6 5 4 35 35 H 1.08002 * 119.99761 * 179.97438 * 7 6 5 36 36 H 1.08002 * 120.00290 * 179.97438 * 8 7 6 37 37 H 1.08994 * 117.49632 * 145.02010 * 9 2 1 38 38 H 1.08995 * 117.49725 * 359.97438 * 9 2 1 39 39 H 0.96990 * 120.00437 * 359.97438 * 14 12 10 40 40 H 1.09003 * 110.71954 * 324.21224 * 17 15 14 41 41 H 1.08991 * 110.72196 * 200.93429 * 17 15 14 42 42 H 1.09004 * 109.88266 * 262.77996 * 18 17 15 43 43 H 1.08994 * 109.88525 * 141.60994 * 18 17 15 44 44 H 0.97000 * 119.99944 * 180.02562 * 23 22 20 45 45 H 1.08997 * 110.36263 * 94.48107 * 28 19 18 46 46 H 1.08995 * 110.36557 * 216.80389 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1802 1.3596 0.0000 4 6 2.2832 2.0765 1.1774 5 6 2.8840 3.3214 1.1782 6 6 3.3724 3.8540 -0.0003 7 6 3.2647 3.1393 -1.1786 8 6 2.6682 1.8922 -1.1786 9 6 2.2365 -1.1210 -0.7650 10 6 2.2364 -1.1209 0.7651 11 1 1.6113 -1.8581 1.2687 12 6 3.5293 -0.7810 1.4608 13 8 4.5811 -0.8707 0.8638 14 7 3.5165 -0.3773 2.7467 15 6 4.7734 -0.0473 3.4233 16 1 5.5015 0.3521 2.7174 17 6 4.5320 0.9429 4.5931 18 6 4.0882 0.0160 5.7446 19 7 4.5900 -1.3316 5.4381 20 6 4.3924 -2.4498 6.2034 21 1 4.8044 -3.3979 5.8906 22 6 3.6627 -2.3649 7.3811 23 7 3.1610 -1.2094 7.7626 24 14 3.3926 -3.8905 8.4247 25 1 2.5886 -3.5355 9.6216 26 1 2.6696 -4.9137 7.6277 27 1 4.7057 -4.4349 8.8546 28 6 5.3462 -1.2783 4.1737 29 1 -0.3634 0.0773 1.0247 30 1 -0.3633 0.8488 -0.5793 31 1 -0.3634 -0.9261 -0.4455 32 1 1.8974 1.6625 2.0972 33 1 2.9678 3.8800 2.0988 34 1 3.8377 4.8286 -0.0005 35 1 3.6458 3.5556 -2.0994 36 1 2.5837 1.3340 -2.0993 37 1 3.1715 -0.8751 -1.2682 38 1 1.6113 -1.8587 -1.2679 39 1 2.6753 -0.3053 3.2241 40 1 3.7423 1.6511 4.3422 41 1 5.4526 1.4658 4.8520 42 1 3.0003 0.0006 5.8098 43 1 4.5132 0.3646 6.6858 44 1 2.6514 -1.1500 8.5858 45 1 6.4093 -1.1431 4.3730 46 1 5.1805 -2.1864 3.5940 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015331837.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:23 Heat of formation + Delta-G solvation = 20.295330 kcal Electronic energy + Delta-G solvation = -26770.165209 eV Core-core repulsion = 23239.155701 eV Total energy + Delta-G solvation = -3531.009508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.55288 -40.08547 -38.96358 -37.61258 -35.37220 -33.57673 -31.74763 -31.59436 -31.02025 -29.60653 -28.91902 -26.59029 -25.10357 -24.02531 -23.28246 -22.02244 -21.58259 -21.16501 -20.37107 -18.98439 -18.43549 -17.52116 -17.09644 -16.64267 -16.36723 -15.95507 -15.76753 -15.58554 -15.36459 -15.02975 -14.82604 -14.23847 -14.10590 -13.96663 -13.83360 -13.68146 -13.58788 -13.56098 -13.02487 -12.89553 -12.79596 -12.71288 -12.29185 -12.14860 -12.06370 -12.00061 -11.89377 -11.81249 -11.60499 -11.30643 -11.06426 -10.71415 -10.64775 -10.01767 -9.75531 -9.58915 -8.86461 -7.84910 -5.19214 0.46962 0.55000 1.45888 1.48055 1.54546 1.59534 2.22255 2.49324 2.70324 2.91157 3.33787 3.54678 3.66019 3.71358 3.78972 3.81589 4.03756 4.08165 4.15099 4.20009 4.27809 4.31750 4.32851 4.62088 4.66827 4.71361 4.74346 4.77763 4.84988 4.88600 4.94765 4.96730 5.00255 5.02627 5.11978 5.18888 5.19644 5.34892 5.43691 5.60297 5.62833 5.66660 5.68294 5.71734 5.76597 6.15579 6.19650 6.63620 7.11780 7.31172 7.76938 8.41588 9.24732 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017839 B = 0.003751 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.212070 B = 7463.659655 C = 7976.449460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.054 4.054 3 C -0.066 4.066 4 C -0.116 4.116 5 C -0.129 4.129 6 C -0.129 4.129 7 C -0.129 4.129 8 C -0.119 4.119 9 C -0.128 4.128 10 C -0.193 4.193 11 H 0.141 0.859 12 C 0.547 3.453 13 O -0.584 6.584 14 N -0.694 5.694 15 C 0.146 3.854 16 H 0.093 0.907 17 C -0.132 4.132 18 C 0.187 3.813 19 N -0.619 5.619 20 C -0.245 4.245 21 H 0.072 0.928 22 C -0.056 4.056 23 N -0.945 5.945 24 Si 0.974 3.026 25 H -0.291 1.291 26 H -0.279 1.279 27 H -0.282 1.282 28 C 0.123 3.877 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.089 0.911 38 H 0.132 0.868 39 H 0.405 0.595 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.022 0.978 43 H 0.008 0.992 44 H 0.248 0.752 45 H 0.028 0.972 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.097 8.980 -18.532 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.054 4.054 3 C -0.066 4.066 4 C -0.134 4.134 5 C -0.147 4.147 6 C -0.147 4.147 7 C -0.146 4.146 8 C -0.137 4.137 9 C -0.165 4.165 10 C -0.213 4.213 11 H 0.159 0.841 12 C 0.334 3.666 13 O -0.465 6.465 14 N -0.342 5.342 15 C 0.040 3.960 16 H 0.111 0.889 17 C -0.170 4.170 18 C 0.063 3.937 19 N -0.346 5.346 20 C -0.374 4.374 21 H 0.090 0.910 22 C -0.250 4.250 23 N -0.594 5.594 24 Si 0.803 3.197 25 H -0.217 1.217 26 H -0.205 1.205 27 H -0.208 1.208 28 C -0.004 4.004 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.108 0.892 38 H 0.150 0.850 39 H 0.240 0.760 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.040 0.960 43 H 0.026 0.974 44 H 0.057 0.943 45 H 0.046 0.954 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.449 8.869 -18.744 21.440 hybrid contribution -0.173 -0.978 1.467 1.771 sum -5.621 7.891 -17.277 19.808 Atomic orbital electron populations 1.21390 0.88658 1.03529 1.02961 1.20306 0.95746 0.86918 1.02473 1.19191 0.99085 0.94397 0.93943 1.21086 0.99594 0.95168 0.97588 1.21374 0.98407 0.95807 0.99093 1.21448 0.99757 1.00820 0.92656 1.21418 0.99278 0.94812 0.99133 1.21191 0.98365 0.96211 0.97914 1.23261 1.02367 1.00127 0.90719 1.22492 0.96928 1.04976 0.96952 0.84119 1.20004 0.90174 0.75039 0.81334 1.90625 1.34290 1.54892 1.66684 1.45710 1.09825 1.67036 1.11659 1.21860 0.86479 0.94648 0.93031 0.88942 1.23049 1.02907 0.97056 0.93996 1.20928 0.96303 0.82963 0.93556 1.44682 1.61333 1.05757 1.22811 1.19311 1.28174 0.88000 1.01892 0.91008 1.25509 1.00472 0.99837 0.99177 1.70137 1.40719 1.24168 1.24333 0.85223 0.77538 0.78976 0.77988 1.21706 1.20470 1.20832 1.22086 0.94401 0.96815 0.87090 0.91552 0.91108 0.90079 0.86482 0.84938 0.84259 0.84113 0.85068 0.89212 0.84975 0.75967 0.88926 0.89536 0.96008 0.97394 0.94306 0.95427 0.95560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.84 71.98 0.71 -0.92 16 2 C -0.05 -1.08 2.19 -52.92 -0.12 -1.20 16 3 C -0.07 -1.52 4.28 -19.86 -0.09 -1.60 16 4 C -0.12 -2.75 8.64 22.27 0.19 -2.56 16 5 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 6 C -0.13 -2.55 10.05 22.27 0.22 -2.32 16 7 C -0.13 -2.52 10.05 22.27 0.22 -2.29 16 8 C -0.12 -2.54 9.31 22.27 0.21 -2.33 16 9 C -0.13 -2.63 8.99 30.60 0.28 -2.35 16 10 C -0.19 -4.75 5.90 -11.54 -0.07 -4.82 16 11 H 0.14 3.10 8.14 -2.39 -0.02 3.08 16 12 C 0.55 17.94 5.97 87.66 0.52 18.46 16 13 O -0.58 -23.30 16.09 -3.01 -0.05 -23.35 16 14 N -0.69 -22.73 4.65 -435.59 -2.02 -24.76 16 15 C 0.15 5.23 3.43 46.46 0.16 5.39 16 16 H 0.09 3.29 7.54 -2.39 -0.02 3.28 16 17 C -0.13 -4.53 6.55 31.78 0.21 -4.32 16 18 C 0.19 8.80 5.36 86.73 0.47 9.26 16 19 N -0.62 -31.63 3.39 -691.52 -2.35 -33.98 16 20 C -0.24 -13.82 10.28 84.03 0.86 -12.96 16 21 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 22 C -0.06 -3.17 5.49 84.86 0.47 -2.71 16 23 N -0.94 -55.21 10.31 21.65 0.22 -54.98 16 24 Si 0.97 45.59 29.55 68.60 2.03 47.62 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 27 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 28 C 0.12 5.36 6.95 86.93 0.60 5.96 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 31 H 0.08 0.95 7.90 -2.39 -0.02 0.93 16 32 H 0.12 2.76 7.79 -2.91 -0.02 2.73 16 33 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.13 2.38 7.92 -2.91 -0.02 2.36 16 37 H 0.09 2.19 7.66 -2.39 -0.02 2.17 16 38 H 0.13 1.93 8.05 -2.39 -0.02 1.91 16 39 H 0.41 12.76 8.66 -92.72 -0.80 11.95 16 40 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.02 1.11 7.38 -2.38 -0.02 1.10 16 43 H 0.01 0.42 7.50 -2.39 -0.02 0.40 16 44 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 45 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -69.90 376.27 3.07 -66.84 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.16 Total: 26.52 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 5.07 Total: -3.90 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -4.15 Total: -113.72 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.05 Total: -23.35 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -69.90 3.07 -66.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015331837.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.131 kcal (2) G-P(sol) polarization free energy of solvation -69.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds