Wall clock time and date at job start Tue Mar 31 2020 10:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99954 * 2 1 4 4 C 1.38212 * 119.99611 * 180.25574 * 3 2 1 5 5 C 1.38255 * 120.00431 * 359.79222 * 4 3 2 6 6 C 1.38219 * 119.99839 * 359.95512 * 5 4 3 7 7 C 1.38214 * 119.99939 * 179.77484 * 2 1 3 8 8 C 1.50701 * 120.00385 * 359.97438 * 7 2 1 9 9 H 1.09001 * 115.54562 * 334.06177 * 8 7 2 10 10 C 1.52995 * 117.49971 * 188.35424 * 8 7 2 11 11 C 1.52999 * 117.50085 * 119.72760 * 8 7 2 12 12 H 1.08995 * 117.49365 * 359.97438 * 11 8 7 13 13 C 1.50695 * 117.49623 * 214.98091 * 11 8 7 14 14 O 1.21279 * 120.00620 * 0.02562 * 13 11 8 15 15 N 1.34779 * 119.99862 * 179.97438 * 13 11 8 16 16 C 1.46498 * 120.00192 * 180.02562 * 15 13 11 17 17 H 1.08998 * 110.88788 * 328.88433 * 16 15 13 18 18 C 1.55155 * 111.00351 * 204.99691 * 16 15 13 19 19 C 1.54325 * 102.94415 * 206.42168 * 18 16 15 20 20 N 1.47026 * 107.26985 * 22.19811 * 19 18 16 21 21 C 1.36936 * 125.65021 * 181.02200 * 20 19 18 22 22 H 1.07994 * 119.99672 * 185.18209 * 21 20 19 23 23 C 1.38811 * 119.99637 * 4.90142 * 21 20 19 24 24 N 1.31613 * 120.00320 * 353.26787 * 23 21 20 25 25 Si 1.86804 * 119.99642 * 173.26875 * 23 21 20 26 26 H 1.48498 * 109.46825 * 94.98907 * 25 23 21 27 27 H 1.48493 * 109.47062 * 214.98403 * 25 23 21 28 28 H 1.48499 * 109.47097 * 334.98688 * 25 23 21 29 29 C 1.47432 * 108.70028 * 1.28278 * 20 19 18 30 30 H 1.09004 * 109.47094 * 270.22789 * 1 2 3 31 31 H 1.08996 * 109.47519 * 30.22562 * 1 2 3 32 32 H 1.08999 * 109.47091 * 150.23125 * 1 2 3 33 33 H 1.07995 * 120.00021 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.99881 * 179.76844 * 4 3 2 35 35 H 1.07998 * 120.00213 * 179.97438 * 5 4 3 36 36 H 1.08000 * 119.99960 * 180.02562 * 6 5 4 37 37 H 1.08999 * 117.49854 * 145.02388 * 10 8 7 38 38 H 1.09003 * 117.50382 * 359.97438 * 10 8 7 39 39 H 0.97001 * 120.00069 * 0.02562 * 15 13 11 40 40 H 1.09002 * 110.71660 * 88.06573 * 18 16 15 41 41 H 1.08992 * 110.87929 * 324.86158 * 18 16 15 42 42 H 1.08995 * 109.88716 * 262.78150 * 19 18 16 43 43 H 1.08993 * 109.88097 * 141.61136 * 19 18 16 44 44 H 0.96996 * 120.00254 * 180.02562 * 24 23 21 45 45 H 1.09002 * 110.36186 * 94.48413 * 29 20 19 46 46 H 1.08994 * 110.36468 * 216.80132 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0053 5 6 4.2717 0.0000 -0.0063 6 6 3.5806 -1.1970 -0.0011 7 6 2.1980 -1.1970 0.0047 8 6 1.4446 -2.5021 0.0104 9 1 0.4438 -2.4653 0.4408 10 6 2.2543 -3.7844 0.2126 11 6 1.6737 -3.4553 -1.1642 12 1 2.3691 -3.1382 -1.9413 13 6 0.4987 -4.2718 -1.6371 14 8 -0.5778 -4.1586 -1.0903 15 7 0.6440 -5.1271 -2.6685 16 6 -0.4984 -5.9205 -3.1287 17 1 -1.1718 -6.1478 -2.3023 18 6 -0.0256 -7.2189 -3.8343 19 6 -1.1911 -7.5339 -4.7956 20 7 -1.9196 -6.2775 -5.0249 21 6 -3.0352 -6.1329 -5.8056 22 1 -3.4498 -5.1507 -5.9782 23 6 -3.6297 -7.2480 -6.3799 24 7 -3.0492 -8.4254 -6.2853 25 14 -5.2537 -7.0776 -7.2871 26 1 -4.9940 -6.9074 -8.7392 27 1 -6.0722 -8.2975 -7.0703 28 1 -5.9859 -5.8923 -6.7729 29 6 -1.2462 -5.1980 -4.2799 30 1 -0.3633 0.0041 1.0277 31 1 -0.3634 0.8879 -0.5173 32 1 -0.3633 -0.8920 -0.5102 33 1 1.6583 2.1326 0.0004 34 1 4.1204 2.1326 -0.0091 35 1 5.3516 0.0000 -0.0109 36 1 4.1206 -2.1323 -0.0014 37 1 1.7864 -4.5915 0.7762 38 1 3.3321 -3.6841 0.3411 39 1 1.5049 -5.2174 -3.1062 40 1 0.1065 -8.0242 -3.1117 41 1 0.8962 -7.0457 -4.3895 42 1 -1.8555 -8.2705 -4.3440 43 1 -0.8005 -7.9134 -5.7398 44 1 -3.4644 -9.2046 -6.6870 45 1 -0.5400 -4.6753 -4.9250 46 1 -1.9803 -4.5007 -3.8762 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015825790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:16 Heat of formation + Delta-G solvation = 15.400857 kcal Electronic energy + Delta-G solvation = -25261.114726 eV Core-core repulsion = 21729.892978 eV Total energy + Delta-G solvation = -3531.221748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.41846 -40.36500 -39.03099 -37.22928 -35.60924 -33.79207 -33.67460 -31.53147 -31.00805 -29.02446 -27.78950 -26.72227 -25.15591 -24.73993 -22.30352 -22.17285 -21.85803 -21.36871 -20.79918 -19.05403 -18.48208 -17.39945 -17.36815 -16.71724 -16.30942 -16.17275 -15.78525 -15.67480 -15.48114 -14.94052 -14.68179 -14.63431 -14.19999 -13.98850 -13.93195 -13.69936 -13.56061 -13.17508 -13.04514 -12.98711 -12.81523 -12.78718 -12.41926 -12.16946 -12.06180 -12.05335 -11.86662 -11.83112 -11.63803 -11.54315 -11.39493 -10.90611 -10.71574 -10.10495 -9.63912 -9.36395 -8.94550 -7.90105 -5.25081 0.39375 0.51677 1.43529 1.45925 1.49284 1.55580 2.07569 2.48057 2.69044 3.09929 3.28750 3.51948 3.65938 3.68902 3.80691 3.89408 3.99494 4.02883 4.04102 4.16829 4.21055 4.22785 4.29925 4.46214 4.57104 4.67601 4.71273 4.75480 4.76794 4.80220 4.84427 4.95585 4.96736 5.00017 5.07453 5.15820 5.21054 5.31745 5.39746 5.52789 5.61995 5.63537 5.66366 5.71121 5.78995 6.15840 6.16074 6.58832 7.06517 7.26827 7.71872 8.35696 9.20524 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023079 B = 0.002448 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.928723 B =11433.510239 C =12109.409679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.095 4.095 3 C -0.130 4.130 4 C -0.126 4.126 5 C -0.128 4.128 6 C -0.119 4.119 7 C -0.067 4.067 8 C -0.093 4.093 9 H 0.104 0.896 10 C -0.122 4.122 11 C -0.175 4.175 12 H 0.148 0.852 13 C 0.537 3.463 14 O -0.586 6.586 15 N -0.697 5.697 16 C 0.146 3.854 17 H 0.074 0.926 18 C -0.127 4.127 19 C 0.183 3.817 20 N -0.626 5.626 21 C -0.249 4.249 22 H 0.077 0.923 23 C -0.061 4.061 24 N -0.947 5.947 25 Si 0.979 3.021 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.272 1.272 29 C 0.128 3.872 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.100 0.900 38 H 0.139 0.861 39 H 0.418 0.582 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.249 0.751 45 H 0.031 0.969 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.675 15.393 14.760 29.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.143 4.143 5 C -0.146 4.146 6 C -0.137 4.137 7 C -0.067 4.067 8 C -0.111 4.111 9 H 0.122 0.878 10 C -0.159 4.159 11 C -0.196 4.196 12 H 0.166 0.834 13 C 0.325 3.675 14 O -0.466 6.466 15 N -0.348 5.348 16 C 0.039 3.961 17 H 0.092 0.908 18 C -0.166 4.166 19 C 0.057 3.943 20 N -0.353 5.353 21 C -0.378 4.378 22 H 0.094 0.906 23 C -0.255 4.255 24 N -0.595 5.595 25 Si 0.806 3.194 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.197 1.197 29 C 0.002 3.998 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.118 0.882 38 H 0.157 0.843 39 H 0.255 0.745 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.059 0.941 45 H 0.049 0.951 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 18.775 15.334 15.020 28.517 hybrid contribution -1.145 -0.252 -1.031 1.562 sum 17.630 15.082 13.989 27.092 Atomic orbital electron populations 1.20833 0.91407 1.02711 1.02583 1.19952 0.96340 0.93200 0.99968 1.21260 0.95034 0.97480 1.01045 1.21467 0.94072 0.99302 0.99507 1.21442 1.01108 0.92083 0.99984 1.21304 0.92834 0.99650 0.99903 1.19057 0.93802 0.92187 1.01665 1.20981 1.00474 0.89069 1.00618 0.87813 1.23266 1.01644 0.97326 0.93701 1.22311 0.99205 1.03145 0.94901 0.83446 1.20275 0.89087 0.79093 0.79008 1.90695 1.29906 1.67687 1.58345 1.45696 1.13602 1.41557 1.33985 1.21832 0.87960 0.91130 0.95139 0.90794 1.22986 0.98902 0.96267 0.98401 1.20963 0.90407 0.87668 0.95226 1.44687 1.30513 1.05188 1.54947 1.19401 1.02140 0.93590 1.22654 0.90561 1.25660 1.02377 0.95179 1.02273 1.70158 1.39874 0.99220 1.50262 0.85071 0.79263 0.76974 0.78077 1.20962 1.21642 1.19735 1.21976 0.94613 0.91151 0.92111 0.90691 0.90768 0.92742 0.84885 0.84070 0.83698 0.83740 0.88197 0.84305 0.74458 0.89272 0.88895 0.96674 0.96568 0.94123 0.95087 0.95881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 9.33 71.24 0.66 -1.68 16 2 C -0.09 -1.86 5.88 -19.87 -0.12 -1.97 16 3 C -0.13 -2.14 9.70 22.27 0.22 -1.92 16 4 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 5 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 6 C -0.12 -1.71 9.30 22.27 0.21 -1.50 16 7 C -0.07 -1.26 5.61 -19.87 -0.11 -1.37 16 8 C -0.09 -1.88 4.65 -11.54 -0.05 -1.94 16 9 H 0.10 2.63 6.44 -2.39 -0.02 2.62 16 10 C -0.12 -1.85 9.56 30.59 0.29 -1.56 16 11 C -0.17 -3.40 5.82 -11.54 -0.07 -3.46 16 12 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 13 C 0.54 15.38 7.61 87.66 0.67 16.05 16 14 O -0.59 -22.51 15.90 -3.03 -0.05 -22.56 16 15 N -0.70 -18.69 5.19 -435.62 -2.26 -20.95 16 16 C 0.15 5.26 3.44 46.46 0.16 5.42 16 17 H 0.07 3.06 7.54 -2.39 -0.02 3.04 16 18 C -0.13 -4.38 6.59 31.78 0.21 -4.17 16 19 C 0.18 9.01 5.38 86.73 0.47 9.48 16 20 N -0.63 -33.58 3.39 -691.55 -2.35 -35.93 16 21 C -0.25 -14.59 10.27 84.03 0.86 -13.73 16 22 H 0.08 4.35 7.84 -2.91 -0.02 4.33 16 23 C -0.06 -3.59 5.48 84.86 0.46 -3.13 16 24 N -0.95 -57.50 10.36 21.65 0.22 -57.28 16 25 Si 0.98 46.87 29.56 68.60 2.03 48.90 16 26 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 27 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 29 C 0.13 5.66 6.93 86.93 0.60 6.27 16 30 H 0.07 1.35 8.14 -2.38 -0.02 1.34 16 31 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 32 H 0.05 1.31 6.65 -2.39 -0.02 1.29 16 33 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 36 H 0.15 1.34 6.02 -2.91 -0.02 1.33 16 37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.14 1.21 6.18 -2.39 -0.01 1.20 16 39 H 0.42 8.01 8.57 -92.71 -0.79 7.22 16 40 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.09 2.66 8.01 -2.39 -0.02 2.64 16 42 H 0.01 0.84 7.30 -2.39 -0.02 0.82 16 43 H 0.02 0.87 7.60 -2.39 -0.02 0.86 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -75.47 372.95 2.70 -72.77 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.19 Total: 17.17 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 4.91 Total: -2.12 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -4.39 Total: -114.16 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.05 Total: -22.56 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -75.47 2.70 -72.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015825790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.170 kcal (2) G-P(sol) polarization free energy of solvation -75.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds