Wall clock time and date at job start Tue Mar 31 2020 10:27:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38255 * 119.99820 * 2 1
4 4 C 1.38220 * 119.99681 * 179.97438 * 3 2 1
5 5 C 1.38254 * 120.00044 * 0.09566 * 4 3 2
6 6 C 1.38204 * 119.99840 * 359.86143 * 5 4 3
7 7 C 1.50708 * 119.99830 * 180.02562 * 6 5 4
8 8 H 1.08996 * 115.54811 * 154.43800 * 7 6 5
9 9 C 1.53000 * 117.49714 * 8.76505 * 7 6 5
10 10 C 1.52999 * 117.49680 * 300.10527 * 7 6 5
11 11 H 1.09004 * 117.50051 * 359.97438 * 10 7 6
12 12 C 1.50700 * 117.49898 * 214.98099 * 10 7 6
13 13 O 1.21274 * 120.00080 * 0.02562 * 12 10 7
14 14 N 1.34780 * 119.99862 * 179.97438 * 12 10 7
15 15 C 1.46501 * 119.99938 * 179.97438 * 14 12 10
16 16 H 1.09002 * 110.88369 * 328.88500 * 15 14 12
17 17 C 1.55155 * 111.00191 * 205.00240 * 15 14 12
18 18 C 1.54324 * 102.94140 * 277.42533 * 17 15 14
19 19 N 1.47023 * 107.27239 * 337.81046 * 18 17 15
20 20 C 1.36936 * 125.64579 * 178.98236 * 19 18 17
21 21 H 1.07999 * 119.99620 * 179.97438 * 20 19 18
22 22 C 1.38815 * 120.00316 * 359.97438 * 20 19 18
23 23 N 1.31618 * 119.99903 * 359.97438 * 22 20 19
24 24 Si 1.86793 * 119.99878 * 179.97438 * 22 20 19
25 25 H 1.48504 * 109.47732 * 0.02562 * 24 22 20
26 26 H 1.48506 * 109.47096 * 119.99867 * 24 22 20
27 27 H 1.48500 * 109.47583 * 239.99736 * 24 22 20
28 28 C 1.47421 * 108.70472 * 358.94105 * 19 18 17
29 29 C 1.38207 * 119.99822 * 179.97438 * 2 1 3
30 30 H 1.09002 * 109.46961 * 89.99927 * 1 2 3
31 31 H 1.08993 * 109.47341 * 210.00456 * 1 2 3
32 32 H 1.09001 * 109.46864 * 330.00541 * 1 2 3
33 33 H 1.08000 * 120.00604 * 359.70329 * 3 2 1
34 34 H 1.08002 * 119.99604 * 180.02562 * 4 3 2
35 35 H 1.07997 * 119.99709 * 179.97438 * 5 4 3
36 36 H 1.09000 * 117.50290 * 0.02562 * 9 7 6
37 37 H 1.09004 * 117.49695 * 145.02346 * 9 7 6
38 38 H 0.97000 * 119.99794 * 359.97438 * 14 12 10
39 39 H 1.08994 * 110.72521 * 35.79394 * 17 15 14
40 40 H 1.08998 * 110.71873 * 159.06862 * 17 15 14
41 41 H 1.09001 * 109.88028 * 97.22720 * 18 17 15
42 42 H 1.09002 * 109.88536 * 218.38969 * 18 17 15
43 43 H 0.96994 * 119.99989 * 180.02562 * 23 22 20
44 44 H 1.09004 * 110.36639 * 265.29251 * 28 19 18
45 45 H 1.08994 * 110.37312 * 142.96504 * 28 19 18
46 46 H 1.07991 * 120.00421 * 0.02562 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1973 0.0000
4 6 3.5804 1.1973 0.0005
5 6 4.2717 0.0000 -0.0009
6 6 3.5806 -1.1969 0.0000
7 6 4.3342 -2.5021 -0.0010
8 1 3.8015 -3.3527 0.4240
9 6 5.8492 -2.4432 0.2038
10 6 5.2753 -2.7734 -1.1764
11 1 5.3492 -2.0082 -1.9491
12 6 5.3954 -4.1965 -1.6575
13 8 4.7585 -5.0753 -1.1163
14 7 6.2098 -4.4924 -2.6898
15 6 6.3269 -5.8760 -3.1572
16 1 6.1869 -6.5772 -2.3344
17 6 7.6885 -6.1111 -3.8629
18 6 7.4316 -5.5891 -5.2922
19 7 5.9787 -5.6216 -5.5143
20 6 5.3365 -5.2190 -6.6548
21 1 4.2604 -5.2833 -6.7199
22 6 6.0686 -4.7283 -7.7273
23 7 7.3800 -4.6495 -7.6478
24 14 5.1925 -4.1798 -9.2832
25 1 3.7286 -4.3680 -9.1197
26 1 5.4816 -2.7450 -9.5344
27 1 5.6709 -4.9896 -10.4324
28 6 5.3277 -6.1603 -4.3063
29 6 2.1980 -1.1969 0.0005
30 1 -0.3633 0.0000 -1.0277
31 1 -0.3633 -0.8899 0.5139
32 1 -0.3633 0.8901 0.5138
33 1 1.6583 2.1327 -0.0048
34 1 4.1204 2.1327 0.0010
35 1 5.3517 0.0000 -0.0009
36 1 6.3010 -1.4606 0.3397
37 1 6.3134 -3.2554 0.7632
38 1 6.7183 -3.7893 -3.1234
39 1 8.4782 -5.5368 -3.3786
40 1 7.9364 -7.1724 -3.8788
41 1 7.7980 -4.5667 -5.3849
42 1 7.9319 -6.2314 -6.0170
43 1 7.8915 -4.3062 -8.3970
44 1 5.1640 -7.2330 -4.4099
45 1 4.3834 -5.6475 -4.1235
46 1 1.6581 -2.1322 0.0005
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001015827063.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:27:25
Heat of formation + Delta-G solvation = 31.859188 kcal
Electronic energy + Delta-G solvation = -25411.846802 eV
Core-core repulsion = 21881.338740 eV
Total energy + Delta-G solvation = -3530.508061 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-40.28452 -39.30764 -37.57012 -36.23088 -33.69319 -32.68373 -31.79460 -30.94268
-29.20133 -27.43499 -27.04692 -24.90741 -24.05861 -23.54451 -22.23313 -20.49903
-20.08892 -19.77120 -19.56324 -17.55051 -16.94786 -16.58233 -15.92456 -15.35533
-15.20701 -14.67214 -14.63111 -14.19954 -13.97853 -13.93661 -13.75030 -13.31784
-13.27240 -12.65231 -12.45742 -12.42590 -12.27207 -12.02105 -11.93178 -11.81516
-11.43868 -11.08205 -10.97978 -10.91497 -10.74877 -10.71916 -10.51820 -10.34170
-10.11255 -9.95185 -9.68689 -9.55979 -8.88442 -8.73835 -8.63289 -8.51406
-6.82650 -5.72929 -3.05366 1.14468 1.24636 2.71877 3.37353 3.39190
3.45249 3.47265 3.56381 3.97982 4.42438 4.49650 4.62070 4.72583
4.73833 4.83903 4.95639 5.00704 5.15927 5.19715 5.29081 5.35659
5.40330 5.45831 5.47581 5.49855 5.58997 5.63909 5.77778 5.83025
5.85943 5.88086 5.95604 6.01707 6.20851 6.32405 6.37463 6.43598
6.49108 6.50970 6.53027 6.69217 6.86379 7.05719 7.53094 7.55423
7.79011 7.91127 8.23952 8.55194 9.21426 9.81280 10.47041 11.39101
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.012372 B = 0.003162 C = 0.002766
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2262.688982 B = 8852.860237 C =10121.689077
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.085 4.085
3 C -0.127 4.127
4 C -0.114 4.114
5 C -0.126 4.126
6 C -0.045 4.045
7 C -0.085 4.085
8 H 0.126 0.874
9 C -0.145 4.145
10 C -0.173 4.173
11 H 0.125 0.875
12 C 0.543 3.457
13 O -0.552 6.552
14 N -0.698 5.698
15 C 0.128 3.872
16 H 0.089 0.911
17 C -0.154 4.154
18 C 0.176 3.824
19 N -0.604 5.604
20 C -0.224 4.224
21 H 0.077 0.923
22 C -0.009 4.009
23 N -0.923 5.923
24 Si 0.911 3.089
25 H -0.280 1.280
26 H -0.291 1.291
27 H -0.291 1.291
28 C 0.125 3.875
29 C -0.110 4.110
30 H 0.071 0.929
31 H 0.066 0.934
32 H 0.065 0.935
33 H 0.119 0.881
34 H 0.121 0.879
35 H 0.124 0.876
36 H 0.106 0.894
37 H 0.104 0.896
38 H 0.404 0.596
39 H 0.065 0.935
40 H 0.072 0.928
41 H 0.046 0.954
42 H 0.044 0.956
43 H 0.251 0.749
44 H 0.028 0.972
45 H 0.042 0.958
46 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.789 9.662 18.008 20.990
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.085 4.085
3 C -0.145 4.145
4 C -0.132 4.132
5 C -0.144 4.144
6 C -0.045 4.045
7 C -0.104 4.104
8 H 0.144 0.856
9 C -0.183 4.183
10 C -0.194 4.194
11 H 0.143 0.857
12 C 0.329 3.671
13 O -0.430 6.430
14 N -0.347 5.347
15 C 0.022 3.978
16 H 0.107 0.893
17 C -0.193 4.193
18 C 0.051 3.949
19 N -0.331 5.331
20 C -0.352 4.352
21 H 0.095 0.905
22 C -0.205 4.205
23 N -0.572 5.572
24 Si 0.741 3.259
25 H -0.206 1.206
26 H -0.218 1.218
27 H -0.218 1.218
28 C -0.002 4.002
29 C -0.128 4.128
30 H 0.090 0.910
31 H 0.085 0.915
32 H 0.084 0.916
33 H 0.137 0.863
34 H 0.139 0.861
35 H 0.141 0.859
36 H 0.125 0.875
37 H 0.122 0.878
38 H 0.238 0.762
39 H 0.084 0.916
40 H 0.090 0.910
41 H 0.064 0.936
42 H 0.062 0.938
43 H 0.061 0.939
44 H 0.045 0.955
45 H 0.060 0.940
46 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -5.185 9.094 18.157 20.958
hybrid contribution -0.088 0.684 -1.352 1.518
sum -5.273 9.778 16.805 20.145
Atomic orbital electron populations
1.20800 0.91187 1.02680 1.02494 1.19908 0.96104 0.93069 0.99421
1.21021 0.94317 0.97427 1.01711 1.21093 0.94287 0.97863 0.99963
1.21051 1.00044 0.91920 1.01337 1.19128 0.93318 0.92983 0.99106
1.21055 0.91798 0.96716 1.00787 0.85597 1.23119 0.95436 1.03506
0.96204 1.22382 1.07054 0.96499 0.93483 0.85694 1.19486 0.79023
0.88869 0.79749 1.90655 1.45444 1.48877 1.58063 1.45758 1.45221
1.10642 1.33065 1.22149 0.97123 0.82297 0.96221 0.89263 1.23224
0.95219 1.01440 0.99369 1.21172 0.84946 0.99568 0.89221 1.44487
1.01884 1.74575 1.12138 1.19110 0.91112 1.34722 0.90257 0.90513
1.24772 0.95698 1.01702 0.98341 1.69959 1.04114 1.52075 1.31004
0.86055 0.78557 0.77972 0.83270 1.20555 1.21814 1.21766 1.21944
0.95018 0.96580 0.86684 1.20897 0.93385 0.97819 1.00661 0.91045
0.91467 0.91638 0.86261 0.86059 0.85862 0.87546 0.87783 0.76151
0.91585 0.90974 0.93607 0.93771 0.93875 0.95487 0.93985 0.85843
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16
2 C -0.09 -0.87 5.88 -104.63 -0.62 -1.48 16
3 C -0.13 -1.21 9.70 -39.58 -0.38 -1.60 16
4 C -0.11 -1.09 10.05 -39.58 -0.40 -1.48 16
5 C -0.13 -1.29 9.30 -39.59 -0.37 -1.66 16
6 C -0.05 -0.52 5.61 -104.62 -0.59 -1.11 16
7 C -0.09 -1.01 5.55 -91.77 -0.51 -1.52 16
8 H 0.13 1.64 7.67 -51.93 -0.40 1.24 16
9 C -0.15 -1.48 9.57 -26.69 -0.26 -1.74 16
10 C -0.17 -2.22 5.82 -91.73 -0.53 -2.75 16
11 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16
12 C 0.54 8.86 7.61 -10.98 -0.08 8.77 16
13 O -0.55 -10.61 15.90 5.56 0.09 -10.52 16
14 N -0.70 -11.59 5.19 -51.73 -0.27 -11.86 16
15 C 0.13 2.30 3.43 -65.78 -0.23 2.08 16
16 H 0.09 1.57 7.54 -51.93 -0.39 1.18 16
17 C -0.15 -2.73 6.55 -24.90 -0.16 -2.89 16
18 C 0.18 4.09 5.36 -3.06 -0.02 4.07 16
19 N -0.60 -15.24 3.39 -170.07 -0.58 -15.82 16
20 C -0.22 -6.24 10.28 -15.06 -0.15 -6.40 16
21 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16
22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16
23 N -0.92 -26.66 10.31 55.49 0.57 -26.09 16
24 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16
25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16
26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
28 C 0.12 2.70 6.93 -2.53 -0.02 2.68 16
29 C -0.11 -1.24 9.39 -39.58 -0.37 -1.61 16
30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16
32 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16
33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16
34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16
35 H 0.12 1.05 6.02 -52.49 -0.32 0.74 16
36 H 0.11 0.86 6.18 -51.93 -0.32 0.54 16
37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16
38 H 0.40 6.40 8.67 -40.82 -0.35 6.04 16
39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
41 H 0.05 1.16 7.38 -51.93 -0.38 0.77 16
42 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16
43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16
44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16
45 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16
46 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16
LS Contribution 376.64 15.07 5.68 5.68
Total: -1.00 -32.06 376.64 -11.12 -43.18
By element:
Atomic # 1 Polarization: 13.00 SS G_CDS: -7.17 Total: 5.83 kcal
Atomic # 6 Polarization: -3.11 SS G_CDS: -4.42 Total: -7.53 kcal
Atomic # 7 Polarization: -53.49 SS G_CDS: -0.27 Total: -53.77 kcal
Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal
Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -32.06 -11.12 -43.18 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001015827063.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.038 kcal
(2) G-P(sol) polarization free energy of solvation -32.060 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.978 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.119 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.859 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds