Wall clock time and date at job start Tue Mar 31 2020 10:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 119.99820 * 2 1 4 4 C 1.38220 * 119.99681 * 179.97438 * 3 2 1 5 5 C 1.38254 * 120.00044 * 0.09566 * 4 3 2 6 6 C 1.38204 * 119.99840 * 359.86143 * 5 4 3 7 7 C 1.50708 * 119.99830 * 180.02562 * 6 5 4 8 8 H 1.08996 * 115.54811 * 154.43800 * 7 6 5 9 9 C 1.53000 * 117.49714 * 8.76505 * 7 6 5 10 10 C 1.52999 * 117.49680 * 300.10527 * 7 6 5 11 11 H 1.09004 * 117.50051 * 359.97438 * 10 7 6 12 12 C 1.50700 * 117.49898 * 214.98099 * 10 7 6 13 13 O 1.21274 * 120.00080 * 0.02562 * 12 10 7 14 14 N 1.34780 * 119.99862 * 179.97438 * 12 10 7 15 15 C 1.46501 * 119.99938 * 179.97438 * 14 12 10 16 16 H 1.09002 * 110.88369 * 328.88500 * 15 14 12 17 17 C 1.55155 * 111.00191 * 205.00240 * 15 14 12 18 18 C 1.54324 * 102.94140 * 277.42533 * 17 15 14 19 19 N 1.47023 * 107.27239 * 337.81046 * 18 17 15 20 20 C 1.36936 * 125.64579 * 178.98236 * 19 18 17 21 21 H 1.07999 * 119.99620 * 179.97438 * 20 19 18 22 22 C 1.38815 * 120.00316 * 359.97438 * 20 19 18 23 23 N 1.31618 * 119.99903 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99878 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47732 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47096 * 119.99867 * 24 22 20 27 27 H 1.48500 * 109.47583 * 239.99736 * 24 22 20 28 28 C 1.47421 * 108.70472 * 358.94105 * 19 18 17 29 29 C 1.38207 * 119.99822 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.46961 * 89.99927 * 1 2 3 31 31 H 1.08993 * 109.47341 * 210.00456 * 1 2 3 32 32 H 1.09001 * 109.46864 * 330.00541 * 1 2 3 33 33 H 1.08000 * 120.00604 * 359.70329 * 3 2 1 34 34 H 1.08002 * 119.99604 * 180.02562 * 4 3 2 35 35 H 1.07997 * 119.99709 * 179.97438 * 5 4 3 36 36 H 1.09000 * 117.50290 * 0.02562 * 9 7 6 37 37 H 1.09004 * 117.49695 * 145.02346 * 9 7 6 38 38 H 0.97000 * 119.99794 * 359.97438 * 14 12 10 39 39 H 1.08994 * 110.72521 * 35.79394 * 17 15 14 40 40 H 1.08998 * 110.71873 * 159.06862 * 17 15 14 41 41 H 1.09001 * 109.88028 * 97.22720 * 18 17 15 42 42 H 1.09002 * 109.88536 * 218.38969 * 18 17 15 43 43 H 0.96994 * 119.99989 * 180.02562 * 23 22 20 44 44 H 1.09004 * 110.36639 * 265.29251 * 28 19 18 45 45 H 1.08994 * 110.37312 * 142.96504 * 28 19 18 46 46 H 1.07991 * 120.00421 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 -0.0009 6 6 3.5806 -1.1969 0.0000 7 6 4.3342 -2.5021 -0.0010 8 1 3.8015 -3.3527 0.4240 9 6 5.8492 -2.4432 0.2038 10 6 5.2753 -2.7734 -1.1764 11 1 5.3492 -2.0082 -1.9491 12 6 5.3954 -4.1965 -1.6575 13 8 4.7585 -5.0753 -1.1163 14 7 6.2098 -4.4924 -2.6898 15 6 6.3269 -5.8760 -3.1572 16 1 6.1869 -6.5772 -2.3344 17 6 7.6885 -6.1111 -3.8629 18 6 7.4316 -5.5891 -5.2922 19 7 5.9787 -5.6216 -5.5143 20 6 5.3365 -5.2190 -6.6548 21 1 4.2604 -5.2833 -6.7199 22 6 6.0686 -4.7283 -7.7273 23 7 7.3800 -4.6495 -7.6478 24 14 5.1925 -4.1798 -9.2832 25 1 3.7286 -4.3680 -9.1197 26 1 5.4816 -2.7450 -9.5344 27 1 5.6709 -4.9896 -10.4324 28 6 5.3277 -6.1603 -4.3063 29 6 2.1980 -1.1969 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.6583 2.1327 -0.0048 34 1 4.1204 2.1327 0.0010 35 1 5.3517 0.0000 -0.0009 36 1 6.3010 -1.4606 0.3397 37 1 6.3134 -3.2554 0.7632 38 1 6.7183 -3.7893 -3.1234 39 1 8.4782 -5.5368 -3.3786 40 1 7.9364 -7.1724 -3.8788 41 1 7.7980 -4.5667 -5.3849 42 1 7.9319 -6.2314 -6.0170 43 1 7.8915 -4.3062 -8.3970 44 1 5.1640 -7.2330 -4.4099 45 1 4.3834 -5.6475 -4.1235 46 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015827063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:25 Heat of formation + Delta-G solvation = 31.859188 kcal Electronic energy + Delta-G solvation = -25411.846802 eV Core-core repulsion = 21881.338740 eV Total energy + Delta-G solvation = -3530.508061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.28452 -39.30764 -37.57012 -36.23088 -33.69319 -32.68373 -31.79460 -30.94268 -29.20133 -27.43499 -27.04692 -24.90741 -24.05861 -23.54451 -22.23313 -20.49903 -20.08892 -19.77120 -19.56324 -17.55051 -16.94786 -16.58233 -15.92456 -15.35533 -15.20701 -14.67214 -14.63111 -14.19954 -13.97853 -13.93661 -13.75030 -13.31784 -13.27240 -12.65231 -12.45742 -12.42590 -12.27207 -12.02105 -11.93178 -11.81516 -11.43868 -11.08205 -10.97978 -10.91497 -10.74877 -10.71916 -10.51820 -10.34170 -10.11255 -9.95185 -9.68689 -9.55979 -8.88442 -8.73835 -8.63289 -8.51406 -6.82650 -5.72929 -3.05366 1.14468 1.24636 2.71877 3.37353 3.39190 3.45249 3.47265 3.56381 3.97982 4.42438 4.49650 4.62070 4.72583 4.73833 4.83903 4.95639 5.00704 5.15927 5.19715 5.29081 5.35659 5.40330 5.45831 5.47581 5.49855 5.58997 5.63909 5.77778 5.83025 5.85943 5.88086 5.95604 6.01707 6.20851 6.32405 6.37463 6.43598 6.49108 6.50970 6.53027 6.69217 6.86379 7.05719 7.53094 7.55423 7.79011 7.91127 8.23952 8.55194 9.21426 9.81280 10.47041 11.39101 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012372 B = 0.003162 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.688982 B = 8852.860237 C =10121.689077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.045 4.045 7 C -0.085 4.085 8 H 0.126 0.874 9 C -0.145 4.145 10 C -0.173 4.173 11 H 0.125 0.875 12 C 0.543 3.457 13 O -0.552 6.552 14 N -0.698 5.698 15 C 0.128 3.872 16 H 0.089 0.911 17 C -0.154 4.154 18 C 0.176 3.824 19 N -0.604 5.604 20 C -0.224 4.224 21 H 0.077 0.923 22 C -0.009 4.009 23 N -0.923 5.923 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.125 3.875 29 C -0.110 4.110 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.404 0.596 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.251 0.749 44 H 0.028 0.972 45 H 0.042 0.958 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 9.662 18.008 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.045 4.045 7 C -0.104 4.104 8 H 0.144 0.856 9 C -0.183 4.183 10 C -0.194 4.194 11 H 0.143 0.857 12 C 0.329 3.671 13 O -0.430 6.430 14 N -0.347 5.347 15 C 0.022 3.978 16 H 0.107 0.893 17 C -0.193 4.193 18 C 0.051 3.949 19 N -0.331 5.331 20 C -0.352 4.352 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.572 5.572 24 Si 0.741 3.259 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.002 4.002 29 C -0.128 4.128 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.238 0.762 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.045 0.955 45 H 0.060 0.940 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.185 9.094 18.157 20.958 hybrid contribution -0.088 0.684 -1.352 1.518 sum -5.273 9.778 16.805 20.145 Atomic orbital electron populations 1.20800 0.91187 1.02680 1.02494 1.19908 0.96104 0.93069 0.99421 1.21021 0.94317 0.97427 1.01711 1.21093 0.94287 0.97863 0.99963 1.21051 1.00044 0.91920 1.01337 1.19128 0.93318 0.92983 0.99106 1.21055 0.91798 0.96716 1.00787 0.85597 1.23119 0.95436 1.03506 0.96204 1.22382 1.07054 0.96499 0.93483 0.85694 1.19486 0.79023 0.88869 0.79749 1.90655 1.45444 1.48877 1.58063 1.45758 1.45221 1.10642 1.33065 1.22149 0.97123 0.82297 0.96221 0.89263 1.23224 0.95219 1.01440 0.99369 1.21172 0.84946 0.99568 0.89221 1.44487 1.01884 1.74575 1.12138 1.19110 0.91112 1.34722 0.90257 0.90513 1.24772 0.95698 1.01702 0.98341 1.69959 1.04114 1.52075 1.31004 0.86055 0.78557 0.77972 0.83270 1.20555 1.21814 1.21766 1.21944 0.95018 0.96580 0.86684 1.20897 0.93385 0.97819 1.00661 0.91045 0.91467 0.91638 0.86261 0.86059 0.85862 0.87546 0.87783 0.76151 0.91585 0.90974 0.93607 0.93771 0.93875 0.95487 0.93985 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.09 -0.87 5.88 -104.63 -0.62 -1.48 16 3 C -0.13 -1.21 9.70 -39.58 -0.38 -1.60 16 4 C -0.11 -1.09 10.05 -39.58 -0.40 -1.48 16 5 C -0.13 -1.29 9.30 -39.59 -0.37 -1.66 16 6 C -0.05 -0.52 5.61 -104.62 -0.59 -1.11 16 7 C -0.09 -1.01 5.55 -91.77 -0.51 -1.52 16 8 H 0.13 1.64 7.67 -51.93 -0.40 1.24 16 9 C -0.15 -1.48 9.57 -26.69 -0.26 -1.74 16 10 C -0.17 -2.22 5.82 -91.73 -0.53 -2.75 16 11 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 12 C 0.54 8.86 7.61 -10.98 -0.08 8.77 16 13 O -0.55 -10.61 15.90 5.56 0.09 -10.52 16 14 N -0.70 -11.59 5.19 -51.73 -0.27 -11.86 16 15 C 0.13 2.30 3.43 -65.78 -0.23 2.08 16 16 H 0.09 1.57 7.54 -51.93 -0.39 1.18 16 17 C -0.15 -2.73 6.55 -24.90 -0.16 -2.89 16 18 C 0.18 4.09 5.36 -3.06 -0.02 4.07 16 19 N -0.60 -15.24 3.39 -170.07 -0.58 -15.82 16 20 C -0.22 -6.24 10.28 -15.06 -0.15 -6.40 16 21 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 23 N -0.92 -26.66 10.31 55.49 0.57 -26.09 16 24 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 C 0.12 2.70 6.93 -2.53 -0.02 2.68 16 29 C -0.11 -1.24 9.39 -39.58 -0.37 -1.61 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.12 1.05 6.02 -52.49 -0.32 0.74 16 36 H 0.11 0.86 6.18 -51.93 -0.32 0.54 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.40 6.40 8.67 -40.82 -0.35 6.04 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.16 7.38 -51.93 -0.38 0.77 16 42 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -32.06 376.64 -11.12 -43.18 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.17 Total: 5.83 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -4.42 Total: -7.53 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.27 Total: -53.77 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.06 -11.12 -43.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015827063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.038 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds