Wall clock time and date at job start Tue Mar 31 2020 10:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38359 * 119.85974 * 2 1 4 4 C 1.37953 * 120.14829 * 180.02562 * 3 2 1 5 5 C 1.39570 * 119.85229 * 359.97438 * 4 3 2 6 6 C 1.47852 * 120.14338 * 180.02562 * 5 4 3 7 7 O 1.21551 * 119.99988 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99957 * 180.27360 * 6 5 4 9 9 C 1.46503 * 120.00149 * 179.72552 * 8 6 5 10 10 H 1.09002 * 115.54896 * 350.70561 * 9 8 6 11 11 C 1.53032 * 117.50358 * 136.39328 * 9 8 6 12 12 C 1.52816 * 117.50252 * 204.97851 * 9 8 6 13 13 C 1.53181 * 117.71261 * 144.90097 * 12 9 8 14 14 C 1.53352 * 108.77234 * 158.89053 * 13 12 9 15 15 N 1.46840 * 108.81519 * 51.29879 * 14 13 12 16 16 C 1.36938 * 120.37551 * 123.12491 * 15 14 13 17 17 H 1.07995 * 120.00652 * 331.79607 * 16 15 14 18 18 C 1.38813 * 119.99605 * 151.79871 * 16 15 14 19 19 N 1.31621 * 120.00254 * 159.29915 * 18 16 15 20 20 Si 1.86800 * 120.00214 * 339.30307 * 18 16 15 21 21 H 1.48500 * 109.47315 * 94.24461 * 20 18 16 22 22 H 1.48498 * 109.47373 * 214.24548 * 20 18 16 23 23 H 1.48502 * 109.46726 * 334.24371 * 20 18 16 24 24 C 1.46841 * 119.23710 * 303.10625 * 15 14 13 25 25 C 1.53185 * 117.71542 * 0.13574 * 12 9 8 26 26 C 1.39576 * 119.71520 * 0.27789 * 5 4 3 27 27 C 1.37957 * 119.84730 * 359.44395 * 26 5 4 28 28 H 1.09008 * 109.46994 * 89.99732 * 1 2 3 29 29 H 1.08999 * 109.47644 * 210.00234 * 1 2 3 30 30 H 1.09000 * 109.47054 * 330.00216 * 1 2 3 31 31 H 1.08005 * 119.91996 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.07198 * 180.02562 * 4 3 2 33 33 H 0.97004 * 120.00309 * 359.72760 * 8 6 5 34 34 H 1.08995 * 117.49943 * 214.95584 * 11 9 8 35 35 H 1.08995 * 117.50029 * 0.02562 * 11 9 8 36 36 H 1.09004 * 109.58657 * 278.67573 * 13 12 9 37 37 H 1.09001 * 109.59027 * 39.09766 * 13 12 9 38 38 H 1.09007 * 109.57396 * 291.50070 * 14 13 12 39 39 H 1.08993 * 109.69029 * 171.17276 * 14 13 12 40 40 H 0.96994 * 120.00251 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.57767 * 297.10726 * 24 15 14 42 42 H 1.09000 * 109.58289 * 176.70433 * 24 15 14 43 43 H 1.08999 * 109.58427 * 320.90731 * 25 12 9 44 44 H 1.08999 * 109.58317 * 81.33362 * 25 12 9 45 45 H 1.07998 * 120.07480 * 179.70667 * 26 5 4 46 46 H 1.08004 * 119.92810 * 180.27667 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5753 1.2069 -0.0005 5 6 4.2761 -0.0001 -0.0005 6 6 5.7547 -0.0002 -0.0005 7 8 6.3625 1.0524 -0.0001 8 7 6.4285 -1.1674 -0.0061 9 6 7.8935 -1.1675 -0.0122 10 1 8.3630 -0.1966 -0.1706 11 6 8.6040 -2.1526 0.9187 12 6 8.5967 -2.3948 -0.5904 13 6 9.9066 -2.1722 -1.3526 14 6 10.6928 -3.4886 -1.3778 15 7 9.8100 -4.5583 -1.8602 16 6 10.1578 -5.3015 -2.9564 17 1 10.7846 -4.8717 -3.7237 18 6 9.7046 -6.6076 -3.0815 19 7 9.6757 -7.1838 -4.2646 20 14 9.1356 -7.5476 -1.5709 21 1 7.6641 -7.4093 -1.4269 22 1 9.4856 -8.9831 -1.7201 23 1 9.8049 -6.9978 -0.3647 24 6 8.5502 -4.8219 -1.1533 25 6 7.7205 -3.5326 -1.1237 26 6 3.5752 -1.2071 -0.0059 27 6 2.1957 -1.2000 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6522 2.1332 -0.0004 32 1 4.1118 2.1442 -0.0001 33 1 5.9434 -2.0075 -0.0061 34 1 9.5411 -1.8300 1.3722 35 1 7.9814 -2.8009 1.5353 36 1 9.6868 -1.8582 -2.3730 37 1 10.4955 -1.4044 -0.8507 38 1 11.0391 -3.7265 -0.3720 39 1 11.5488 -3.3924 -2.0456 40 1 9.3587 -8.0963 -4.3521 41 1 8.7638 -5.1423 -0.1335 42 1 7.9950 -5.6017 -1.6746 43 1 6.8588 -3.6674 -0.4699 44 1 7.3830 -3.2921 -2.1318 45 1 4.1117 -2.1445 -0.0107 46 1 1.6520 -2.1333 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016946786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:15 Heat of formation + Delta-G solvation = 14.982205 kcal Electronic energy + Delta-G solvation = -25710.844934 eV Core-core repulsion = 22179.605032 eV Total energy + Delta-G solvation = -3531.239902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.49438 -40.34555 -39.27174 -37.31456 -34.81164 -33.94120 -33.25557 -32.07582 -31.88568 -30.30805 -28.31722 -26.03703 -24.64506 -24.17124 -23.66323 -23.08790 -22.20337 -21.29435 -19.98601 -19.12169 -18.36893 -17.50664 -17.22244 -16.28785 -16.18665 -16.01586 -15.92448 -15.89506 -15.36601 -15.31669 -14.76586 -14.57636 -14.52716 -14.42251 -14.26335 -14.16292 -13.65857 -13.47103 -13.03917 -13.00005 -12.93609 -12.62958 -12.56832 -12.40830 -12.27184 -12.10761 -11.97020 -11.61572 -11.52955 -11.31419 -11.16283 -10.80302 -10.63545 -9.99819 -9.88480 -9.58374 -8.85853 -8.15627 -5.47450 -0.20411 0.38054 1.29730 1.42966 1.52569 1.72620 1.97894 2.42694 2.75799 2.95434 3.07706 3.35967 3.58058 3.67994 3.76599 3.82708 3.90165 3.96869 4.00344 4.01546 4.35245 4.36988 4.40518 4.48938 4.58914 4.68370 4.73543 4.78782 4.80063 4.83596 4.85768 4.91254 4.93917 4.96327 5.05445 5.12006 5.20407 5.21944 5.28607 5.29488 5.35479 5.46519 5.50734 5.57583 5.89039 5.92529 6.14253 6.41516 6.94899 7.08540 7.65026 8.04979 9.04619 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.003114 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.957426 B = 8989.236643 C =10097.300712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.060 4.060 3 C -0.133 4.133 4 C -0.071 4.071 5 C -0.163 4.163 6 C 0.559 3.441 7 O -0.581 6.581 8 N -0.685 5.685 9 C 0.080 3.920 10 H 0.125 0.875 11 C -0.162 4.162 12 C -0.119 4.119 13 C -0.089 4.089 14 C 0.148 3.852 15 N -0.619 5.619 16 C -0.250 4.250 17 H 0.046 0.954 18 C -0.038 4.038 19 N -0.960 5.960 20 Si 0.951 3.049 21 H -0.271 1.271 22 H -0.314 1.314 23 H -0.258 1.258 24 C 0.127 3.873 25 C -0.089 4.089 26 C -0.083 4.083 27 C -0.133 4.133 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.150 0.850 32 H 0.126 0.874 33 H 0.410 0.590 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.041 0.959 39 H 0.053 0.947 40 H 0.261 0.739 41 H 0.040 0.960 42 H 0.048 0.952 43 H 0.082 0.918 44 H 0.052 0.948 45 H 0.140 0.860 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.261 14.465 14.308 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.060 4.060 3 C -0.151 4.151 4 C -0.090 4.090 5 C -0.166 4.166 6 C 0.349 3.651 7 O -0.462 6.462 8 N -0.335 5.335 9 C -0.026 4.026 10 H 0.143 0.857 11 C -0.200 4.200 12 C -0.120 4.120 13 C -0.129 4.129 14 C 0.023 3.977 15 N -0.343 5.343 16 C -0.379 4.379 17 H 0.064 0.936 18 C -0.233 4.233 19 N -0.606 5.606 20 Si 0.779 3.221 21 H -0.197 1.197 22 H -0.243 1.243 23 H -0.183 1.183 24 C 0.002 3.998 25 C -0.128 4.128 26 C -0.102 4.102 27 C -0.151 4.151 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.168 0.832 32 H 0.144 0.856 33 H 0.249 0.751 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.070 0.930 45 H 0.158 0.842 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.843 15.076 14.234 27.354 hybrid contribution 0.119 -1.198 -0.134 1.211 sum -17.724 13.878 14.099 26.562 Atomic orbital electron populations 1.20944 0.88671 1.04293 1.03573 1.20572 0.98015 0.92752 0.94692 1.21305 0.92992 0.99318 1.01443 1.21353 0.94939 0.97243 0.95472 1.19875 0.91375 0.95842 1.09472 1.18659 0.88083 0.83319 0.75087 1.90720 1.70821 1.32474 1.52162 1.45259 1.06003 1.08732 1.73462 1.21734 0.79642 0.95979 1.05230 0.85695 1.23683 1.02976 1.01345 0.91976 1.21788 0.97760 0.96239 0.96231 1.21531 0.94181 0.97934 0.99211 1.21039 0.92113 0.87016 0.97510 1.44412 1.18777 1.38752 1.32407 1.18867 1.29300 0.93383 0.96389 0.93573 1.25972 1.00731 0.97551 0.99019 1.69984 1.51963 1.14709 1.23941 0.85828 0.78259 0.76453 0.81517 1.19748 1.24274 1.18259 1.21336 0.86921 0.96286 0.95276 1.21466 0.96926 0.93990 1.00427 1.21524 0.95390 0.96786 0.96492 1.21354 0.93444 0.99222 1.01038 0.89853 0.90060 0.90136 0.83189 0.85593 0.75114 0.86595 0.87415 0.93336 0.89449 0.94102 0.92831 0.92989 0.94236 0.93352 0.89961 0.92963 0.84187 0.82962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.00 71.23 0.71 -0.14 16 2 C -0.06 -0.79 5.89 -19.81 -0.12 -0.91 16 3 C -0.13 -2.02 9.68 22.23 0.22 -1.80 16 4 C -0.07 -1.48 9.60 22.52 0.22 -1.26 16 5 C -0.16 -3.64 5.87 -20.09 -0.12 -3.76 16 6 C 0.56 15.30 7.77 86.79 0.67 15.97 16 7 O -0.58 -20.01 15.91 -3.88 -0.06 -20.07 16 8 N -0.68 -16.31 5.30 -445.64 -2.36 -18.67 16 9 C 0.08 2.05 6.14 44.94 0.28 2.33 16 10 H 0.13 3.52 7.40 -2.39 -0.02 3.50 16 11 C -0.16 -3.64 9.86 30.55 0.30 -3.33 16 12 C -0.12 -3.34 1.94 -52.17 -0.10 -3.45 16 13 C -0.09 -2.78 5.83 30.77 0.18 -2.60 16 14 C 0.15 5.58 6.51 86.43 0.56 6.14 16 15 N -0.62 -28.68 2.71 -698.92 -1.89 -30.57 16 16 C -0.25 -14.21 10.00 84.03 0.84 -13.37 16 17 H 0.05 2.91 8.06 -2.91 -0.02 2.88 16 18 C -0.04 -2.24 5.23 84.86 0.44 -1.79 16 19 N -0.96 -60.62 13.97 21.65 0.30 -60.31 16 20 Si 0.95 45.85 24.40 68.60 1.67 47.52 16 21 H -0.27 -12.11 6.66 99.48 0.66 -11.45 16 22 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 23 H -0.26 -11.82 6.65 99.48 0.66 -11.15 16 24 C 0.13 5.10 4.23 86.43 0.37 5.47 16 25 C -0.09 -2.81 5.37 30.77 0.17 -2.65 16 26 C -0.08 -1.43 9.54 22.53 0.21 -1.22 16 27 C -0.13 -1.85 9.68 22.23 0.22 -1.63 16 28 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.08 0.43 8.08 -2.39 -0.02 0.41 16 30 H 0.08 0.42 8.08 -2.39 -0.02 0.40 16 31 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.13 2.76 7.65 -2.91 -0.02 2.74 16 33 H 0.41 7.92 5.15 -92.71 -0.48 7.44 16 34 H 0.12 2.31 8.14 -2.39 -0.02 2.30 16 35 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 2.20 8.10 -2.39 -0.02 2.18 16 38 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.05 2.09 7.92 -2.39 -0.02 2.07 16 40 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 41 H 0.04 1.50 7.27 -2.39 -0.02 1.49 16 42 H 0.05 2.17 4.31 -2.39 -0.01 2.16 16 43 H 0.08 2.00 6.75 -2.39 -0.02 1.98 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.14 1.88 6.41 -2.91 -0.02 1.86 16 46 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -73.98 364.31 3.13 -70.86 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.42 Total: 19.25 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.05 Total: -8.01 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -3.95 Total: -109.55 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.06 Total: -20.07 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.67 Total: 47.52 kcal Total: -73.98 3.13 -70.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016946786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.840 kcal (2) G-P(sol) polarization free energy of solvation -73.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds