Wall clock time and date at job start Tue Mar 31 2020 10:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38378 * 119.93092 * 2 1 4 4 C 1.38335 * 120.29833 * 179.97438 * 3 2 1 5 5 C 1.37979 * 120.14367 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.07582 * 179.97438 * 5 4 3 7 7 C 1.52998 * 117.49649 * 14.23675 * 6 5 4 8 8 C 1.52997 * 117.49765 * 305.58145 * 6 5 4 9 9 C 1.39566 * 119.84936 * 359.97438 * 5 4 3 10 10 C 1.47848 * 120.13831 * 180.02562 * 9 5 4 11 11 O 1.21550 * 120.00227 * 310.64402 * 10 9 5 12 12 N 1.34775 * 119.99990 * 130.65419 * 10 9 5 13 13 C 1.47024 * 125.64500 * 4.61684 * 12 10 9 14 14 C 1.54336 * 107.26351 * 178.85603 * 13 12 10 15 15 C 1.55162 * 103.01914 * 338.13992 * 14 13 12 16 16 H 1.09009 * 111.00372 * 277.23380 * 15 14 13 17 17 N 1.46503 * 111.00463 * 153.38437 * 15 14 13 18 18 C 1.36939 * 119.99805 * 92.80132 * 17 15 14 19 19 H 1.08002 * 120.00324 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99935 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99657 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00228 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46791 * 60.00516 * 22 20 18 24 24 H 1.48499 * 109.47411 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47221 * 300.00466 * 22 20 18 26 26 C 1.47426 * 125.64985 * 184.92744 * 12 10 9 27 27 C 1.37939 * 119.92401 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47291 * 89.99946 * 1 2 3 29 29 H 1.09005 * 109.47286 * 209.99793 * 1 2 3 30 30 H 1.08998 * 109.47122 * 329.99731 * 1 2 3 31 31 H 1.08004 * 119.84812 * 0.02562 * 3 2 1 32 32 H 1.07991 * 119.93063 * 179.74661 * 4 3 2 33 33 H 1.08996 * 115.55068 * 159.90832 * 6 5 4 34 34 H 1.08996 * 117.50191 * 0.02562 * 7 6 5 35 35 H 1.09007 * 117.49415 * 145.01880 * 7 6 5 36 36 H 1.09006 * 117.49886 * 214.98175 * 8 6 5 37 37 H 1.08999 * 117.50059 * 359.96785 * 8 6 5 38 38 H 1.08995 * 109.88241 * 298.39379 * 13 12 10 39 39 H 1.08999 * 109.88425 * 59.56620 * 13 12 10 40 40 H 1.08998 * 110.84865 * 219.67431 * 14 13 12 41 41 H 1.09000 * 110.67111 * 96.52085 * 14 13 12 42 42 H 0.96993 * 120.00081 * 272.80662 * 17 15 14 43 43 H 0.97000 * 119.99789 * 179.97438 * 21 20 18 44 44 H 1.08991 * 110.36378 * 322.93058 * 26 12 10 45 45 H 1.09006 * 110.36182 * 85.14000 * 26 12 10 46 46 H 1.07994 * 120.08126 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5807 1.2081 0.0005 5 6 4.2813 0.0194 0.0005 6 6 5.7882 0.0308 0.0005 7 6 6.4846 1.3516 0.3343 8 6 6.4886 0.8258 -1.1032 9 6 3.5910 -1.1937 0.0005 10 6 4.3352 -2.4712 0.0011 11 8 5.2339 -2.6515 -0.7972 12 7 4.0170 -3.4361 0.8867 13 6 2.8972 -3.3902 1.8383 14 6 2.9076 -4.7195 2.6223 15 6 3.6939 -5.6727 1.6838 16 1 3.0429 -6.0885 0.9147 17 7 4.3491 -6.7381 2.4466 18 6 3.7128 -7.9360 2.6349 19 1 2.7282 -8.0955 2.2206 20 6 4.3338 -8.9457 3.3572 21 7 5.5339 -8.7515 3.8616 22 14 3.4656 -10.5795 3.6146 23 1 3.1831 -11.2030 2.2967 24 1 4.3342 -11.4812 4.4132 25 1 2.1892 -10.3531 4.3389 26 6 4.7380 -4.7094 1.0661 27 6 2.1951 -1.1955 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6538 2.1325 0.0004 32 1 4.1135 2.1474 -0.0036 33 1 6.2653 -0.8891 0.3383 34 1 5.8528 2.2121 0.5543 35 1 7.4201 1.3005 0.8915 36 1 7.4267 0.4290 -1.4914 37 1 5.8594 1.3401 -1.8297 38 1 3.0271 -2.5525 2.5235 39 1 1.9559 -3.2877 1.2984 40 1 1.8928 -5.0846 2.7803 41 1 3.4259 -4.6010 3.5738 42 1 5.2334 -6.5950 2.8184 43 1 5.9676 -9.4570 4.3667 44 1 5.0822 -5.0892 0.1042 45 1 5.5810 -4.5757 1.7441 46 1 1.6552 -2.1308 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019188397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:36 Heat of formation + Delta-G solvation = 29.705899 kcal Electronic energy + Delta-G solvation = -25861.188324 eV Core-core repulsion = 22330.586889 eV Total energy + Delta-G solvation = -3530.601435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.63833 -39.01165 -37.27363 -37.00681 -34.16471 -32.62365 -31.86572 -30.97697 -29.55283 -27.75733 -27.34882 -24.59852 -23.50392 -23.09489 -22.50621 -22.17953 -20.63707 -20.05213 -18.99653 -17.41917 -17.15595 -16.78276 -16.04932 -15.82225 -15.23275 -14.71879 -14.47170 -14.38797 -14.02821 -14.01969 -13.77301 -13.49757 -13.19821 -12.76252 -12.58753 -12.51765 -12.46990 -12.26535 -11.96543 -11.79885 -11.62705 -11.47605 -11.24308 -11.14820 -10.84690 -10.74888 -10.70085 -10.51762 -10.30909 -10.11633 -9.80634 -9.67525 -9.11571 -8.97534 -8.56641 -8.38752 -7.07417 -5.84163 -3.14916 0.85877 1.10649 2.77392 3.10169 3.40389 3.42608 3.45477 3.46171 3.92308 4.32352 4.45305 4.53148 4.59998 4.64306 4.75434 4.89711 4.93780 5.04064 5.05852 5.21172 5.26627 5.31150 5.35735 5.38499 5.47922 5.53507 5.57075 5.61326 5.68944 5.72710 5.76790 5.88124 5.91379 5.94826 5.97612 6.13250 6.14174 6.23464 6.31234 6.35508 6.39214 6.54007 6.60571 6.70709 6.88171 7.62951 7.69228 8.26953 8.33343 9.44744 9.98467 10.33494 11.37948 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.002997 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.328640 B = 9338.932431 C =10417.815841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.100 4.100 4 C -0.124 4.124 5 C -0.008 4.008 6 C -0.117 4.117 7 C -0.179 4.179 8 C -0.159 4.159 9 C -0.109 4.109 10 C 0.571 3.429 11 O -0.533 6.533 12 N -0.607 5.607 13 C 0.100 3.900 14 C -0.156 4.156 15 C 0.173 3.827 16 H 0.067 0.933 17 N -0.713 5.713 18 C -0.247 4.247 19 H 0.072 0.928 20 C -0.009 4.009 21 N -0.930 5.930 22 Si 0.910 3.090 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.097 3.903 27 C -0.087 4.087 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.999 23.142 -6.794 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.118 4.118 4 C -0.142 4.142 5 C -0.009 4.009 6 C -0.135 4.135 7 C -0.216 4.216 8 C -0.196 4.196 9 C -0.112 4.112 10 C 0.359 3.641 11 O -0.411 6.411 12 N -0.340 5.340 13 C -0.023 4.023 14 C -0.197 4.197 15 C 0.060 3.940 16 H 0.085 0.915 17 N -0.353 5.353 18 C -0.378 4.378 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.740 3.260 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.026 4.026 27 C -0.105 4.105 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.580 22.892 -7.250 24.898 hybrid contribution -0.211 -0.867 0.429 0.990 sum -6.791 22.025 -6.822 24.036 Atomic orbital electron populations 1.20788 0.90747 1.03013 1.02454 1.19829 0.96305 0.92763 1.00783 1.21120 0.93924 0.97594 0.99159 1.20922 0.94055 0.97436 1.01802 1.19072 0.93548 0.91643 0.96642 1.21057 0.90401 0.96900 1.05157 1.23109 1.02563 0.96865 0.99033 1.22956 1.02343 1.02753 0.91554 1.19696 0.93679 0.92925 1.04887 1.17909 0.83208 0.82705 0.80230 1.90788 1.31569 1.80313 1.38438 1.48381 1.31095 1.18467 1.36067 1.22221 0.88937 0.99772 0.91384 1.23445 1.02552 0.93681 1.00057 1.21288 0.92221 0.87857 0.92592 0.91499 1.42251 1.19771 1.11191 1.62109 1.19185 0.99793 0.90271 1.28502 0.90999 1.24773 0.96674 0.98560 1.00569 1.69653 1.14169 1.33694 1.40246 0.86240 0.78465 0.83561 0.77722 1.21144 1.21638 1.21167 1.22635 0.95901 0.82468 1.01616 1.21247 0.92498 0.98361 0.98396 0.91115 0.91256 0.91440 0.85749 0.85463 0.86504 0.88505 0.88370 0.88304 0.88702 0.91951 0.91792 0.90643 0.90583 0.77922 0.93275 0.90400 0.91300 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.10 -0.93 5.87 -104.68 -0.61 -1.54 16 3 C -0.10 -0.90 9.69 -39.49 -0.38 -1.28 16 4 C -0.12 -1.24 9.18 -39.64 -0.36 -1.60 16 5 C -0.01 -0.10 5.66 -104.22 -0.59 -0.69 16 6 C -0.12 -1.46 5.14 -91.78 -0.47 -1.93 16 7 C -0.18 -1.67 9.84 -26.70 -0.26 -1.93 16 8 C -0.16 -1.65 10.09 -26.70 -0.27 -1.92 16 9 C -0.11 -1.50 5.38 -104.96 -0.56 -2.06 16 10 C 0.57 9.46 6.58 -12.33 -0.08 9.38 16 11 O -0.53 -10.44 15.75 5.32 0.08 -10.36 16 12 N -0.61 -9.71 3.33 -171.63 -0.57 -10.28 16 13 C 0.10 1.37 5.79 -3.06 -0.02 1.35 16 14 C -0.16 -2.52 6.64 -24.89 -0.17 -2.69 16 15 C 0.17 3.32 3.72 -65.78 -0.24 3.07 16 16 H 0.07 1.31 8.09 -51.92 -0.42 0.89 16 17 N -0.71 -17.28 5.24 -51.35 -0.27 -17.55 16 18 C -0.25 -6.62 9.96 -15.06 -0.15 -6.77 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 22 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.10 1.74 6.57 -2.53 -0.02 1.73 16 27 C -0.09 -1.00 8.15 -39.18 -0.32 -1.32 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 32 H 0.13 1.00 6.19 -52.49 -0.32 0.68 16 33 H 0.12 1.74 6.64 -51.93 -0.34 1.39 16 34 H 0.10 0.75 6.35 -51.93 -0.33 0.42 16 35 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.75 5.95 -51.93 -0.31 0.44 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.39 9.99 7.76 -40.82 -0.32 9.67 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.08 1.48 7.99 -51.93 -0.41 1.06 16 45 H 0.07 1.27 8.01 -51.93 -0.42 0.86 16 46 H 0.13 1.40 6.12 -52.49 -0.32 1.08 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -31.32 372.49 -10.66 -41.98 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.96 Total: 9.51 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -4.25 Total: -8.98 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.12 Total: -54.62 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.32 -10.66 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019188397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.682 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds