Wall clock time and date at job start Tue Mar 31 2020 10:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38378 * 119.93092 * 2 1 4 4 C 1.38335 * 120.29833 * 179.97438 * 3 2 1 5 5 C 1.37979 * 120.14367 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.07582 * 179.97438 * 5 4 3 7 7 C 1.52998 * 117.49649 * 14.23675 * 6 5 4 8 8 C 1.52997 * 117.49765 * 305.58145 * 6 5 4 9 9 C 1.39566 * 119.84936 * 359.97438 * 5 4 3 10 10 C 1.47848 * 120.13831 * 180.02562 * 9 5 4 11 11 O 1.21550 * 120.00227 * 310.64402 * 10 9 5 12 12 N 1.34775 * 119.99990 * 130.65419 * 10 9 5 13 13 C 1.47024 * 125.64500 * 4.61684 * 12 10 9 14 14 C 1.54336 * 107.26351 * 178.85603 * 13 12 10 15 15 C 1.55162 * 103.01914 * 338.13992 * 14 13 12 16 16 H 1.09009 * 111.00372 * 277.23380 * 15 14 13 17 17 N 1.46503 * 111.00463 * 153.38437 * 15 14 13 18 18 C 1.36939 * 119.99805 * 92.80132 * 17 15 14 19 19 H 1.08002 * 120.00324 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99935 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99657 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00228 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46791 * 60.00516 * 22 20 18 24 24 H 1.48499 * 109.47411 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47221 * 300.00466 * 22 20 18 26 26 C 1.47426 * 125.64985 * 184.92744 * 12 10 9 27 27 C 1.37939 * 119.92401 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47291 * 89.99946 * 1 2 3 29 29 H 1.09005 * 109.47286 * 209.99793 * 1 2 3 30 30 H 1.08998 * 109.47122 * 329.99731 * 1 2 3 31 31 H 1.08004 * 119.84812 * 0.02562 * 3 2 1 32 32 H 1.07991 * 119.93063 * 179.74661 * 4 3 2 33 33 H 1.08996 * 115.55068 * 159.90832 * 6 5 4 34 34 H 1.08996 * 117.50191 * 0.02562 * 7 6 5 35 35 H 1.09007 * 117.49415 * 145.01880 * 7 6 5 36 36 H 1.09006 * 117.49886 * 214.98175 * 8 6 5 37 37 H 1.08999 * 117.50059 * 359.96785 * 8 6 5 38 38 H 1.08995 * 109.88241 * 298.39379 * 13 12 10 39 39 H 1.08999 * 109.88425 * 59.56620 * 13 12 10 40 40 H 1.08998 * 110.84865 * 219.67431 * 14 13 12 41 41 H 1.09000 * 110.67111 * 96.52085 * 14 13 12 42 42 H 0.96993 * 120.00081 * 272.80662 * 17 15 14 43 43 H 0.97000 * 119.99789 * 179.97438 * 21 20 18 44 44 H 1.08991 * 110.36378 * 322.93058 * 26 12 10 45 45 H 1.09006 * 110.36182 * 85.14000 * 26 12 10 46 46 H 1.07994 * 120.08126 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5807 1.2081 0.0005 5 6 4.2813 0.0194 0.0005 6 6 5.7882 0.0308 0.0005 7 6 6.4846 1.3516 0.3343 8 6 6.4886 0.8258 -1.1032 9 6 3.5910 -1.1937 0.0005 10 6 4.3352 -2.4712 0.0011 11 8 5.2339 -2.6515 -0.7972 12 7 4.0170 -3.4361 0.8867 13 6 2.8972 -3.3902 1.8383 14 6 2.9076 -4.7195 2.6223 15 6 3.6939 -5.6727 1.6838 16 1 3.0429 -6.0885 0.9147 17 7 4.3491 -6.7381 2.4466 18 6 3.7128 -7.9360 2.6349 19 1 2.7282 -8.0955 2.2206 20 6 4.3338 -8.9457 3.3572 21 7 5.5339 -8.7515 3.8616 22 14 3.4656 -10.5795 3.6146 23 1 3.1831 -11.2030 2.2967 24 1 4.3342 -11.4812 4.4132 25 1 2.1892 -10.3531 4.3389 26 6 4.7380 -4.7094 1.0661 27 6 2.1951 -1.1955 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6538 2.1325 0.0004 32 1 4.1135 2.1474 -0.0036 33 1 6.2653 -0.8891 0.3383 34 1 5.8528 2.2121 0.5543 35 1 7.4201 1.3005 0.8915 36 1 7.4267 0.4290 -1.4914 37 1 5.8594 1.3401 -1.8297 38 1 3.0271 -2.5525 2.5235 39 1 1.9559 -3.2877 1.2984 40 1 1.8928 -5.0846 2.7803 41 1 3.4259 -4.6010 3.5738 42 1 5.2334 -6.5950 2.8184 43 1 5.9676 -9.4570 4.3667 44 1 5.0822 -5.0892 0.1042 45 1 5.5810 -4.5757 1.7441 46 1 1.6552 -2.1308 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019188397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:35 Heat of formation + Delta-G solvation = 12.357966 kcal Electronic energy + Delta-G solvation = -25861.940587 eV Core-core repulsion = 22330.586889 eV Total energy + Delta-G solvation = -3531.353698 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.70608 -40.12393 -38.60461 -37.89480 -35.96585 -33.63867 -33.17718 -32.15476 -31.03492 -29.29341 -28.03682 -26.08145 -24.98940 -24.03870 -23.40913 -23.17946 -21.81355 -21.38083 -20.08065 -19.34855 -18.36006 -17.68703 -17.47371 -16.72408 -16.60034 -16.16132 -15.69899 -15.43519 -15.26082 -15.04425 -14.74928 -14.66646 -14.55412 -14.28626 -13.85705 -13.55497 -13.29765 -13.18321 -13.07061 -13.03647 -12.92904 -12.65729 -12.48676 -12.41491 -12.34206 -12.18418 -12.00798 -11.78297 -11.64622 -11.51603 -11.35232 -10.95617 -10.95066 -9.98032 -9.71901 -9.33046 -9.07650 -7.96245 -5.27045 -0.01352 0.32960 1.48763 1.51773 1.57155 1.57862 1.86971 2.55734 2.58754 3.08767 3.30074 3.41169 3.55140 3.65226 3.75941 3.88880 3.95241 3.99901 4.02052 4.11948 4.15055 4.21878 4.26777 4.37632 4.46314 4.50140 4.62413 4.64470 4.72973 4.78730 4.86881 4.91390 4.91926 4.93688 5.00967 5.05282 5.17753 5.19056 5.19601 5.31675 5.35175 5.37698 5.51292 5.55054 5.59697 5.96335 6.23864 6.41690 6.98255 7.30747 8.01091 8.25945 9.26903 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.002997 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.328640 B = 9338.932431 C =10417.815841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.090 4.090 4 C -0.123 4.123 5 C -0.022 4.022 6 C -0.146 4.146 7 C -0.154 4.154 8 C -0.160 4.160 9 C -0.137 4.137 10 C 0.569 3.431 11 O -0.576 6.576 12 N -0.607 5.607 13 C 0.108 3.892 14 C -0.143 4.143 15 C 0.168 3.832 16 H 0.067 0.933 17 N -0.728 5.728 18 C -0.244 4.244 19 H 0.082 0.918 20 C -0.073 4.073 21 N -0.970 5.970 22 Si 0.975 3.025 23 H -0.279 1.279 24 H -0.298 1.298 25 H -0.274 1.274 26 C 0.106 3.894 27 C -0.093 4.093 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.159 0.841 32 H 0.152 0.848 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.374 0.626 43 H 0.252 0.748 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 25.957 -6.925 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.108 4.108 4 C -0.141 4.141 5 C -0.023 4.023 6 C -0.164 4.164 7 C -0.191 4.191 8 C -0.197 4.197 9 C -0.140 4.140 10 C 0.360 3.640 11 O -0.457 6.457 12 N -0.340 5.340 13 C -0.014 4.014 14 C -0.184 4.184 15 C 0.058 3.942 16 H 0.085 0.915 17 N -0.367 5.367 18 C -0.376 4.376 19 H 0.100 0.900 20 C -0.265 4.265 21 N -0.620 5.620 22 Si 0.804 3.196 23 H -0.205 1.205 24 H -0.224 1.224 25 H -0.199 1.199 26 C -0.018 4.018 27 C -0.111 4.111 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.177 0.823 32 H 0.170 0.830 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.684 25.749 -7.395 28.486 hybrid contribution 0.728 -1.633 0.397 1.832 sum -8.956 24.116 -6.999 26.660 Atomic orbital electron populations 1.20854 0.88566 1.04166 1.03302 1.20173 0.97829 0.92157 0.99438 1.21564 0.93611 0.98797 0.96824 1.21194 0.94742 0.97191 1.00933 1.19223 0.93453 0.92277 0.97370 1.20959 0.91030 0.96880 1.07575 1.23219 1.02455 0.95593 0.97791 1.23025 1.01999 1.02361 0.92285 1.19573 0.94607 0.91543 1.08251 1.18512 0.82740 0.83518 0.79250 1.90747 1.33592 1.81163 1.40152 1.48425 1.31460 1.17581 1.36542 1.22292 0.89236 0.98679 0.91150 1.23237 1.02372 0.93946 0.98839 1.21421 0.92490 0.87430 0.92856 0.91524 1.42396 1.19540 1.11939 1.62793 1.19605 0.99953 0.90949 1.27064 0.90003 1.25597 0.97535 1.02108 1.01301 1.69820 1.15886 1.34479 1.41794 0.85188 0.77480 0.79315 0.77617 1.20481 1.22449 1.19948 1.22318 0.95594 0.83645 1.00262 1.21342 0.91450 0.99638 0.98704 0.90304 0.90913 0.89581 0.82292 0.83042 0.90322 0.86079 0.87879 0.88861 0.87541 0.90381 0.88951 0.89160 0.91857 0.79382 0.93960 0.92118 0.92493 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 71.23 0.71 -0.37 16 2 C -0.10 -1.50 5.87 -19.90 -0.12 -1.62 16 3 C -0.09 -1.23 9.69 22.33 0.22 -1.02 16 4 C -0.12 -2.07 9.18 22.23 0.20 -1.86 16 5 C -0.02 -0.54 5.66 -19.61 -0.11 -0.65 16 6 C -0.15 -3.70 5.14 -11.54 -0.06 -3.75 16 7 C -0.15 -2.64 9.84 30.62 0.30 -2.34 16 8 C -0.16 -3.24 10.09 30.61 0.31 -2.94 16 9 C -0.14 -3.72 5.38 -20.09 -0.11 -3.83 16 10 C 0.57 19.58 6.58 86.79 0.57 20.15 16 11 O -0.58 -24.08 15.75 -3.87 -0.06 -24.15 16 12 N -0.61 -19.87 3.33 -815.19 -2.71 -22.58 16 13 C 0.11 2.83 5.79 86.73 0.50 3.33 16 14 C -0.14 -4.52 6.64 31.79 0.21 -4.31 16 15 C 0.17 6.58 3.72 46.38 0.17 6.75 16 16 H 0.07 2.61 8.09 -2.38 -0.02 2.59 16 17 N -0.73 -36.21 5.24 -316.36 -1.66 -37.87 16 18 C -0.24 -13.22 9.96 84.03 0.84 -12.38 16 19 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 20 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 21 N -0.97 -59.02 13.06 21.65 0.28 -58.74 16 22 Si 0.98 45.34 29.55 68.60 2.03 47.37 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 C 0.11 4.02 6.57 86.85 0.57 4.59 16 27 C -0.09 -1.96 8.15 22.53 0.18 -1.78 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.67 8.08 -2.38 -0.02 0.65 16 30 H 0.09 0.54 8.08 -2.39 -0.02 0.52 16 31 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 32 H 0.15 1.73 6.19 -2.91 -0.02 1.71 16 33 H 0.08 2.56 6.64 -2.39 -0.02 2.54 16 34 H 0.12 1.47 6.35 -2.39 -0.02 1.45 16 35 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.09 1.93 5.95 -2.39 -0.01 1.92 16 40 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.37 20.24 7.76 -92.71 -0.72 19.52 16 43 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.06 2.47 7.99 -2.39 -0.02 2.45 16 45 H 0.06 2.27 8.01 -2.38 -0.02 2.25 16 46 H 0.14 2.60 6.12 -2.91 -0.02 2.58 16 Total: -1.00 -71.06 372.49 3.01 -68.05 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.27 Total: 33.60 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 4.86 Total: -5.68 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -4.09 Total: -119.19 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.06 Total: -24.15 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -71.06 3.01 -68.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019188397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.406 kcal (2) G-P(sol) polarization free energy of solvation -71.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds