Wall clock time and date at job start Tue Mar 31 2020 11:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 115.55063 * 2 1 4 4 O 1.21280 * 119.99985 * 260.72246 * 3 2 1 5 5 N 1.34770 * 119.99845 * 80.72075 * 3 2 1 6 6 C 1.47027 * 125.65056 * 354.82170 * 5 3 2 7 7 C 1.54328 * 107.27053 * 178.97646 * 6 5 3 8 8 C 1.55153 * 102.94179 * 337.80706 * 7 6 5 9 9 H 1.09008 * 111.00759 * 277.42668 * 8 7 6 10 10 N 1.46504 * 111.03641 * 153.59033 * 8 7 6 11 11 C 1.36937 * 119.99991 * 92.78608 * 10 8 7 12 12 H 1.08004 * 119.99617 * 0.02562 * 11 10 8 13 13 C 1.38810 * 120.00332 * 179.97438 * 11 10 8 14 14 N 1.31620 * 119.99662 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00174 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46991 * 60.00421 * 15 13 11 17 17 H 1.48502 * 109.47182 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47143 * 300.00489 * 15 13 11 19 19 C 1.47432 * 125.64852 * 174.86458 * 5 3 2 20 20 C 1.52999 * 117.52056 * 214.29826 * 2 1 3 21 21 C 1.52999 * 60.00112 * 252.51702 * 20 2 1 22 22 H 1.09000 * 117.50251 * 252.50691 * 21 20 2 23 23 C 1.50701 * 117.51848 * 107.47466 * 21 20 2 24 24 C 1.38238 * 119.99779 * 351.10499 * 23 21 20 25 25 C 1.38239 * 119.99875 * 179.74097 * 24 23 21 26 26 C 1.38244 * 119.99814 * 0.54598 * 25 24 23 27 27 C 1.38231 * 119.99919 * 359.70750 * 26 25 24 28 28 C 1.38232 * 120.00175 * 171.36784 * 23 21 20 29 29 H 1.08995 * 109.46989 * 52.97688 * 1 2 3 30 30 H 1.09002 * 109.47206 * 172.97376 * 1 2 3 31 31 H 1.08995 * 109.47189 * 292.97212 * 1 2 3 32 32 H 1.08998 * 109.88085 * 59.56366 * 6 5 3 33 33 H 1.08997 * 110.00865 * 298.46545 * 6 5 3 34 34 H 1.09000 * 110.71630 * 219.44594 * 7 6 5 35 35 H 1.08996 * 110.71939 * 96.17171 * 7 6 5 36 36 H 0.96994 * 119.99863 * 272.78461 * 10 8 7 37 37 H 0.96996 * 119.99719 * 179.97438 * 14 13 11 38 38 H 1.08995 * 110.36591 * 85.25120 * 19 5 3 39 39 H 1.09003 * 110.36353 * 322.93273 * 19 5 3 40 40 H 1.09000 * 117.49859 * 0.02562 * 20 2 1 41 41 H 1.09001 * 117.50232 * 145.02834 * 20 2 1 42 42 H 1.07995 * 120.00259 * 359.97438 * 24 23 21 43 43 H 1.07997 * 120.00620 * 180.27106 * 25 24 23 44 44 H 1.08000 * 119.99646 * 179.72183 * 26 25 24 45 45 H 1.07994 * 120.00111 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.00251 * 0.02562 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 2.5943 1.8337 -1.0366 5 7 2.3008 2.0488 1.1519 6 6 1.7507 1.6445 2.4540 7 6 2.1595 2.7234 3.4791 8 6 3.3951 3.3847 2.8133 9 1 4.2983 2.8044 3.0025 10 7 3.5589 4.7683 3.2661 11 6 4.3636 5.0472 4.3384 12 1 4.8779 4.2470 4.8500 13 6 4.5192 6.3582 4.7671 14 7 3.8929 7.3333 4.1432 15 14 5.6164 6.7384 6.2303 16 1 7.0018 6.2891 5.9401 17 1 5.6131 8.2015 6.4846 18 1 5.1062 6.0268 7.4297 19 6 3.0058 3.3333 1.3148 20 6 2.2369 -1.1209 -0.7646 21 6 2.2365 -1.1207 0.7654 22 1 3.1714 -0.8746 1.2690 23 6 1.3720 -2.1400 1.4616 24 6 0.4812 -2.9048 0.7318 25 6 -0.3079 -3.8436 1.3697 26 6 -0.2144 -4.0097 2.7389 27 6 0.6726 -3.2413 3.4693 28 6 1.4659 -2.3065 2.8306 29 1 -0.3633 0.6188 -0.8204 30 1 -0.3634 -1.0200 -0.1257 31 1 -0.3633 0.4011 0.9461 32 1 2.1634 0.6793 2.7473 33 1 0.6641 1.5809 2.3963 34 1 2.4322 2.2673 4.4308 35 1 1.3588 3.4504 3.6139 36 1 3.0973 5.4869 2.8063 37 1 4.0013 8.2494 4.4430 38 1 2.3445 4.1632 1.0659 39 1 3.8986 3.3579 0.6898 40 1 1.6121 -1.8585 -1.2682 41 1 3.1721 -0.8750 -1.2677 42 1 0.4045 -2.7715 -0.3371 43 1 -1.0007 -4.4442 0.7990 44 1 -0.8342 -4.7400 3.2378 45 1 0.7454 -3.3707 4.5390 46 1 2.1585 -1.7057 3.4015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019494489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:06 Heat of formation + Delta-G solvation = 32.238498 kcal Electronic energy + Delta-G solvation = -26025.149240 eV Core-core repulsion = 22494.657627 eV Total energy + Delta-G solvation = -3530.491613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.74643 -39.35194 -37.66233 -36.60230 -34.12683 -31.56967 -31.29555 -30.88293 -29.53928 -28.89162 -27.79197 -24.47440 -24.10403 -23.17269 -22.71970 -21.55450 -20.56677 -20.09983 -18.62681 -17.38073 -17.17172 -16.83692 -15.99577 -15.77634 -15.27353 -14.95680 -14.63097 -14.30508 -14.12819 -13.64026 -13.54603 -13.43837 -13.30513 -13.03422 -12.86259 -12.63800 -12.44864 -12.35779 -12.01132 -11.87354 -11.62048 -11.42402 -11.22762 -11.18334 -10.86938 -10.78099 -10.71508 -10.31260 -10.27562 -10.11044 -9.80096 -9.63929 -9.13817 -8.98283 -8.75623 -8.40716 -7.07708 -5.84463 -3.15278 1.05057 1.15645 2.69091 3.02531 3.31436 3.39944 3.44741 3.45690 3.80996 4.20807 4.44704 4.52397 4.54794 4.62071 4.71746 4.75650 4.85383 4.96273 5.06308 5.21934 5.25361 5.32899 5.36138 5.41831 5.53565 5.56033 5.60989 5.64291 5.68446 5.70557 5.75740 5.80389 5.84028 5.93964 6.02769 6.13638 6.23282 6.23608 6.28114 6.36944 6.38581 6.54223 6.60077 6.74715 6.87772 7.62341 7.72155 8.29432 8.33189 9.44380 9.98215 10.33166 11.37635 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.003033 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.051915 B = 9229.817911 C =10302.333673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.132 4.132 3 C 0.561 3.439 4 O -0.541 6.541 5 N -0.606 5.606 6 C 0.105 3.895 7 C -0.156 4.156 8 C 0.173 3.827 9 H 0.066 0.934 10 N -0.713 5.713 11 C -0.246 4.246 12 H 0.072 0.928 13 C -0.009 4.009 14 N -0.930 5.930 15 Si 0.909 3.091 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.285 1.285 19 C 0.097 3.903 20 C -0.139 4.139 21 C -0.102 4.102 22 H 0.117 0.883 23 C -0.045 4.045 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.116 4.116 28 C -0.110 4.110 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.387 0.613 37 H 0.257 0.743 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.349 -23.416 -5.172 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.135 4.135 3 C 0.349 3.651 4 O -0.418 6.418 5 N -0.339 5.339 6 C -0.019 4.019 7 C -0.198 4.198 8 C 0.061 3.939 9 H 0.084 0.916 10 N -0.353 5.353 11 C -0.377 4.377 12 H 0.090 0.910 13 C -0.206 4.206 14 N -0.577 5.577 15 Si 0.740 3.260 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.212 1.212 19 C -0.026 4.026 20 C -0.176 4.176 21 C -0.120 4.120 22 H 0.135 0.865 23 C -0.045 4.045 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.144 4.144 27 C -0.134 4.134 28 C -0.128 4.128 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.221 0.779 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.001 -23.134 -5.638 25.456 hybrid contribution 0.330 0.529 0.815 1.026 sum -8.671 -22.605 -4.823 24.687 Atomic orbital electron populations 1.21373 0.89959 1.03103 1.02699 1.21452 0.96388 0.88887 1.06817 1.19091 0.78839 0.84914 0.82277 1.90700 1.49969 1.69989 1.31178 1.48391 1.54084 1.23051 1.08375 1.22104 0.97923 0.98797 0.83054 1.23437 1.01508 0.97264 0.97549 1.21283 0.94975 0.88435 0.89230 0.91594 1.42255 1.56038 1.01005 1.36037 1.19177 1.20589 0.92308 1.05663 0.91021 1.24773 1.00498 0.95652 0.99661 1.69652 1.46230 0.99406 1.42453 0.86242 0.80364 0.77053 0.82342 1.21154 1.21635 1.21161 1.22630 0.96545 0.84406 0.99055 1.23221 1.02753 0.98579 0.93025 1.21279 0.99729 0.96769 0.94219 0.86455 1.19050 0.96236 0.95754 0.93442 1.21075 0.96429 0.96239 0.99997 1.21112 0.99463 0.98330 0.94808 1.21154 0.99039 0.99872 0.94305 1.21155 0.96201 0.96076 0.99988 1.21027 0.99657 0.98354 0.93732 0.91612 0.90823 0.91611 0.91879 0.92139 0.90723 0.90630 0.77920 0.93270 0.91362 0.90667 0.87555 0.87596 0.85815 0.86159 0.86252 0.85961 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.07 37.16 0.34 -0.82 16 2 C -0.13 -1.54 1.75 -155.66 -0.27 -1.82 16 3 C 0.56 8.85 7.00 -10.99 -0.08 8.77 16 4 O -0.54 -10.54 17.30 5.56 0.10 -10.44 16 5 N -0.61 -9.42 3.33 -170.51 -0.57 -9.99 16 6 C 0.10 1.39 6.39 -3.06 -0.02 1.38 16 7 C -0.16 -2.51 6.65 -24.90 -0.17 -2.67 16 8 C 0.17 3.30 3.71 -65.78 -0.24 3.05 16 9 H 0.07 1.27 8.09 -51.92 -0.42 0.85 16 10 N -0.71 -17.24 5.25 -51.35 -0.27 -17.51 16 11 C -0.25 -6.60 9.96 -15.06 -0.15 -6.75 16 12 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 13 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 14 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 15 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.10 1.73 6.53 -2.53 -0.02 1.72 16 20 C -0.14 -1.39 9.19 -26.73 -0.25 -1.64 16 21 C -0.10 -1.03 4.72 -91.77 -0.43 -1.46 16 22 H 0.12 1.24 8.10 -51.93 -0.42 0.82 16 23 C -0.04 -0.42 5.05 -104.62 -0.53 -0.94 16 24 C -0.12 -0.99 7.38 -39.58 -0.29 -1.28 16 25 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 26 C -0.13 -0.96 10.05 -39.58 -0.40 -1.36 16 27 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 28 C -0.11 -0.99 9.74 -39.58 -0.39 -1.38 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.62 4.99 -51.93 -0.26 0.36 16 31 H 0.06 0.67 7.14 -51.93 -0.37 0.30 16 32 H 0.06 0.74 7.23 -51.93 -0.38 0.36 16 33 H 0.06 0.74 7.14 -51.93 -0.37 0.37 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.39 10.00 7.76 -40.82 -0.32 9.68 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.07 1.28 8.00 -51.93 -0.42 0.86 16 39 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 40 H 0.11 0.85 6.19 -51.93 -0.32 0.53 16 41 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.12 0.87 5.28 -52.49 -0.28 0.60 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -31.38 371.52 -10.12 -41.50 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -6.90 Total: 8.99 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -3.78 Total: -8.19 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.11 Total: -54.27 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.10 Total: -10.44 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.38 -10.12 -41.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019494489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.740 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds