Wall clock time and date at job start Tue Mar 31 2020 11:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 115.55063 * 2 1 4 4 O 1.21280 * 119.99985 * 260.72246 * 3 2 1 5 5 N 1.34770 * 119.99845 * 80.72075 * 3 2 1 6 6 C 1.47027 * 125.65056 * 354.82170 * 5 3 2 7 7 C 1.54328 * 107.27053 * 178.97646 * 6 5 3 8 8 C 1.55153 * 102.94179 * 337.80706 * 7 6 5 9 9 H 1.09008 * 111.00759 * 277.42668 * 8 7 6 10 10 N 1.46504 * 111.03641 * 153.59033 * 8 7 6 11 11 C 1.36937 * 119.99991 * 92.78608 * 10 8 7 12 12 H 1.08004 * 119.99617 * 0.02562 * 11 10 8 13 13 C 1.38810 * 120.00332 * 179.97438 * 11 10 8 14 14 N 1.31620 * 119.99662 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00174 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46991 * 60.00421 * 15 13 11 17 17 H 1.48502 * 109.47182 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47143 * 300.00489 * 15 13 11 19 19 C 1.47432 * 125.64852 * 174.86458 * 5 3 2 20 20 C 1.52999 * 117.52056 * 214.29826 * 2 1 3 21 21 C 1.52999 * 60.00112 * 252.51702 * 20 2 1 22 22 H 1.09000 * 117.50251 * 252.50691 * 21 20 2 23 23 C 1.50701 * 117.51848 * 107.47466 * 21 20 2 24 24 C 1.38238 * 119.99779 * 351.10499 * 23 21 20 25 25 C 1.38239 * 119.99875 * 179.74097 * 24 23 21 26 26 C 1.38244 * 119.99814 * 0.54598 * 25 24 23 27 27 C 1.38231 * 119.99919 * 359.70750 * 26 25 24 28 28 C 1.38232 * 120.00175 * 171.36784 * 23 21 20 29 29 H 1.08995 * 109.46989 * 52.97688 * 1 2 3 30 30 H 1.09002 * 109.47206 * 172.97376 * 1 2 3 31 31 H 1.08995 * 109.47189 * 292.97212 * 1 2 3 32 32 H 1.08998 * 109.88085 * 59.56366 * 6 5 3 33 33 H 1.08997 * 110.00865 * 298.46545 * 6 5 3 34 34 H 1.09000 * 110.71630 * 219.44594 * 7 6 5 35 35 H 1.08996 * 110.71939 * 96.17171 * 7 6 5 36 36 H 0.96994 * 119.99863 * 272.78461 * 10 8 7 37 37 H 0.96996 * 119.99719 * 179.97438 * 14 13 11 38 38 H 1.08995 * 110.36591 * 85.25120 * 19 5 3 39 39 H 1.09003 * 110.36353 * 322.93273 * 19 5 3 40 40 H 1.09000 * 117.49859 * 0.02562 * 20 2 1 41 41 H 1.09001 * 117.50232 * 145.02834 * 20 2 1 42 42 H 1.07995 * 120.00259 * 359.97438 * 24 23 21 43 43 H 1.07997 * 120.00620 * 180.27106 * 25 24 23 44 44 H 1.08000 * 119.99646 * 179.72183 * 26 25 24 45 45 H 1.07994 * 120.00111 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.00251 * 0.02562 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 2.5943 1.8337 -1.0366 5 7 2.3008 2.0488 1.1519 6 6 1.7507 1.6445 2.4540 7 6 2.1595 2.7234 3.4791 8 6 3.3951 3.3847 2.8133 9 1 4.2983 2.8044 3.0025 10 7 3.5589 4.7683 3.2661 11 6 4.3636 5.0472 4.3384 12 1 4.8779 4.2470 4.8500 13 6 4.5192 6.3582 4.7671 14 7 3.8929 7.3333 4.1432 15 14 5.6164 6.7384 6.2303 16 1 7.0018 6.2891 5.9401 17 1 5.6131 8.2015 6.4846 18 1 5.1062 6.0268 7.4297 19 6 3.0058 3.3333 1.3148 20 6 2.2369 -1.1209 -0.7646 21 6 2.2365 -1.1207 0.7654 22 1 3.1714 -0.8746 1.2690 23 6 1.3720 -2.1400 1.4616 24 6 0.4812 -2.9048 0.7318 25 6 -0.3079 -3.8436 1.3697 26 6 -0.2144 -4.0097 2.7389 27 6 0.6726 -3.2413 3.4693 28 6 1.4659 -2.3065 2.8306 29 1 -0.3633 0.6188 -0.8204 30 1 -0.3634 -1.0200 -0.1257 31 1 -0.3633 0.4011 0.9461 32 1 2.1634 0.6793 2.7473 33 1 0.6641 1.5809 2.3963 34 1 2.4322 2.2673 4.4308 35 1 1.3588 3.4504 3.6139 36 1 3.0973 5.4869 2.8063 37 1 4.0013 8.2494 4.4430 38 1 2.3445 4.1632 1.0659 39 1 3.8986 3.3579 0.6898 40 1 1.6121 -1.8585 -1.2682 41 1 3.1721 -0.8750 -1.2677 42 1 0.4045 -2.7715 -0.3371 43 1 -1.0007 -4.4442 0.7990 44 1 -0.8342 -4.7400 3.2378 45 1 0.7454 -3.3707 4.5390 46 1 2.1585 -1.7057 3.4015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019494489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:05 Heat of formation + Delta-G solvation = 15.004382 kcal Electronic energy + Delta-G solvation = -26025.896568 eV Core-core repulsion = 22494.657627 eV Total energy + Delta-G solvation = -3531.238941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.75144 -40.27621 -38.89577 -37.64109 -35.93993 -33.32044 -31.92143 -31.58071 -31.01613 -29.81425 -29.21381 -26.07178 -24.87979 -24.64953 -23.50518 -22.54461 -21.65242 -21.28276 -19.77019 -19.33854 -17.98300 -17.79846 -17.40567 -16.85032 -16.44179 -15.98935 -15.78544 -15.47525 -15.35509 -14.86250 -14.72911 -14.46985 -14.31430 -14.19381 -14.01156 -13.68777 -13.55601 -13.26169 -13.16356 -13.04029 -13.01319 -12.78906 -12.64158 -12.38963 -12.17670 -12.12621 -11.83897 -11.77471 -11.65918 -11.49323 -11.09260 -10.94766 -10.86553 -9.74304 -9.71358 -9.41191 -9.06875 -7.95853 -5.26489 0.43779 0.58253 1.46459 1.49075 1.51804 1.57711 1.81598 2.54574 2.56968 3.10753 3.27810 3.38110 3.61022 3.64932 3.69319 3.81754 3.94459 4.00356 4.04111 4.20655 4.23075 4.25309 4.29435 4.38095 4.47813 4.61534 4.62090 4.69366 4.74565 4.77333 4.83153 4.85268 4.89999 4.96149 5.03734 5.16037 5.19792 5.20493 5.22167 5.26018 5.38883 5.52100 5.66370 5.72171 5.76657 6.18535 6.24375 6.46741 7.02737 7.31225 8.02009 8.26483 9.27284 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.003033 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.051915 B = 9229.817911 C =10302.333673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.141 4.141 3 C 0.557 3.443 4 O -0.586 6.586 5 N -0.605 5.605 6 C 0.113 3.887 7 C -0.144 4.144 8 C 0.169 3.831 9 H 0.066 0.934 10 N -0.728 5.728 11 C -0.243 4.243 12 H 0.082 0.918 13 C -0.073 4.073 14 N -0.970 5.970 15 Si 0.975 3.025 16 H -0.279 1.279 17 H -0.298 1.298 18 H -0.274 1.274 19 C 0.105 3.895 20 C -0.134 4.134 21 C -0.086 4.086 22 H 0.110 0.890 23 C -0.057 4.057 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.129 4.129 27 C -0.125 4.125 28 C -0.122 4.122 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.132 0.868 41 H 0.093 0.907 42 H 0.136 0.864 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.349 -26.573 -4.249 28.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.145 4.145 3 C 0.347 3.653 4 O -0.466 6.466 5 N -0.337 5.337 6 C -0.009 4.009 7 C -0.185 4.185 8 C 0.058 3.942 9 H 0.084 0.916 10 N -0.367 5.367 11 C -0.375 4.375 12 H 0.100 0.900 13 C -0.266 4.266 14 N -0.620 5.620 15 Si 0.803 3.197 16 H -0.205 1.205 17 H -0.225 1.225 18 H -0.200 1.200 19 C -0.019 4.019 20 C -0.171 4.171 21 C -0.104 4.104 22 H 0.128 0.872 23 C -0.057 4.057 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.147 4.147 27 C -0.143 4.143 28 C -0.140 4.140 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.150 0.850 41 H 0.112 0.888 42 H 0.154 0.846 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.012 -26.369 -4.699 28.594 hybrid contribution 0.631 1.404 0.481 1.613 sum -9.381 -24.965 -4.218 27.000 Atomic orbital electron populations 1.21374 0.88503 1.04294 1.02427 1.21372 0.97155 0.86716 1.09207 1.19877 0.78014 0.86094 0.81334 1.90672 1.51909 1.71341 1.32701 1.48455 1.53759 1.22066 1.09461 1.22158 0.99128 0.98652 0.80937 1.23232 0.99165 0.97463 0.98644 1.21420 0.96399 0.86264 0.90080 0.91574 1.42403 1.55859 1.02714 1.35716 1.19592 1.19724 0.92518 1.05618 0.90031 1.25589 1.02544 0.95733 1.02704 1.69818 1.48397 0.99393 1.44368 0.85199 0.78765 0.76221 0.79482 1.20477 1.22490 1.19974 1.22318 0.95996 0.85601 0.98022 1.23344 1.02398 0.97996 0.93379 1.21220 0.99189 0.95786 0.94241 0.87167 1.19009 0.96859 0.96156 0.93635 1.21247 0.96146 0.96154 1.00630 1.21409 0.99463 0.98151 0.95064 1.21472 0.98822 0.99858 0.94580 1.21389 0.96142 0.95923 1.00866 1.21165 1.00117 0.98916 0.93828 0.92366 0.88698 0.91592 0.89391 0.90197 0.89414 0.91904 0.79400 0.93979 0.92683 0.92210 0.85038 0.88816 0.84648 0.84121 0.84406 0.84682 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 9.07 71.98 0.65 -1.31 16 2 C -0.14 -3.09 1.75 -52.93 -0.09 -3.18 16 3 C 0.56 17.45 7.00 87.66 0.61 18.06 16 4 O -0.59 -23.37 17.30 -3.03 -0.05 -23.42 16 5 N -0.61 -18.59 3.33 -811.77 -2.70 -21.29 16 6 C 0.11 2.81 6.39 86.73 0.55 3.37 16 7 C -0.14 -4.45 6.65 31.78 0.21 -4.24 16 8 C 0.17 6.45 3.71 46.38 0.17 6.62 16 9 H 0.07 2.53 8.09 -2.38 -0.02 2.51 16 10 N -0.73 -35.82 5.25 -316.37 -1.66 -37.48 16 11 C -0.24 -13.05 9.96 84.03 0.84 -12.21 16 12 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 13 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 14 N -0.97 -58.78 13.06 21.65 0.28 -58.50 16 15 Si 0.97 45.13 29.55 68.60 2.03 47.16 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 17 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 C 0.10 3.86 6.53 86.85 0.57 4.43 16 20 C -0.13 -2.47 9.19 30.59 0.28 -2.19 16 21 C -0.09 -1.56 4.72 -11.54 -0.05 -1.62 16 22 H 0.11 2.16 8.10 -2.39 -0.02 2.14 16 23 C -0.06 -0.90 5.05 -19.87 -0.10 -1.00 16 24 C -0.12 -1.64 7.38 22.27 0.16 -1.48 16 25 C -0.12 -1.43 10.05 22.27 0.22 -1.21 16 26 C -0.13 -1.55 10.05 22.27 0.22 -1.32 16 27 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 28 C -0.12 -1.90 9.74 22.27 0.22 -1.68 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.30 4.99 -2.39 -0.01 1.28 16 31 H 0.07 1.17 7.14 -2.39 -0.02 1.16 16 32 H 0.09 1.81 7.23 -2.39 -0.02 1.79 16 33 H 0.08 1.75 7.14 -2.39 -0.02 1.73 16 34 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 36 H 0.37 20.07 7.76 -92.71 -0.72 19.35 16 37 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.05 2.16 8.00 -2.39 -0.02 2.14 16 39 H 0.06 2.36 8.09 -2.39 -0.02 2.34 16 40 H 0.13 1.71 6.19 -2.39 -0.01 1.70 16 41 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.14 1.40 5.28 -2.91 -0.02 1.39 16 43 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 44 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 45 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 46 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -68.88 371.52 3.32 -65.55 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: 0.27 Total: 32.05 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 5.16 Total: -4.08 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -4.08 Total: -117.27 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -68.88 3.32 -65.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019494489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.558 kcal (2) G-P(sol) polarization free energy of solvation -68.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds