Wall clock time and date at job start Tue Mar 31 2020 10:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38253 * 120.00332 * 2 1 4 4 C 1.38210 * 120.00312 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99825 * 359.97438 * 4 3 2 6 6 C 1.38213 * 120.00285 * 359.74892 * 5 4 3 7 7 C 1.38214 * 119.99838 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99939 * 0.02562 * 7 2 1 9 9 H 1.09002 * 115.55088 * 334.41165 * 8 7 2 10 10 C 1.53005 * 117.49691 * 188.74235 * 8 7 2 11 11 C 1.52999 * 59.99973 * 252.48494 * 10 8 7 12 12 H 1.08995 * 117.49529 * 107.48826 * 11 10 8 13 13 C 1.50693 * 117.50064 * 252.51042 * 11 10 8 14 14 O 1.21280 * 119.99991 * 68.62189 * 13 11 10 15 15 N 1.34778 * 120.00264 * 248.62816 * 13 11 10 16 16 C 1.47026 * 125.64503 * 359.68530 * 15 13 11 17 17 C 1.54333 * 107.26543 * 178.85251 * 16 15 13 18 18 C 1.55159 * 103.01998 * 338.14374 * 17 16 15 19 19 H 1.08995 * 111.00178 * 277.23180 * 18 17 16 20 20 N 1.46499 * 111.00424 * 153.38034 * 18 17 16 21 21 C 1.36942 * 120.00084 * 92.80148 * 20 18 17 22 22 H 1.07995 * 120.00044 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99803 * 179.97438 * 21 20 18 24 24 N 1.31622 * 119.99478 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00159 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46863 * 90.00265 * 25 23 21 27 27 H 1.48498 * 109.46937 * 209.99675 * 25 23 21 28 28 H 1.48500 * 109.47151 * 329.99835 * 25 23 21 29 29 C 1.47425 * 125.65117 * 179.97438 * 15 13 11 30 30 H 1.09000 * 109.46732 * 270.02154 * 1 2 3 31 31 H 1.08999 * 109.46918 * 30.01904 * 1 2 3 32 32 H 1.09000 * 109.47183 * 150.02209 * 1 2 3 33 33 H 1.08007 * 119.99613 * 359.97438 * 3 2 1 34 34 H 1.08007 * 120.00105 * 180.02562 * 4 3 2 35 35 H 1.08005 * 120.00166 * 180.02562 * 5 4 3 36 36 H 1.07995 * 120.00382 * 180.27761 * 6 5 4 37 37 H 1.09004 * 117.49602 * 359.97438 * 10 8 7 38 38 H 1.09004 * 117.49360 * 144.99546 * 10 8 7 39 39 H 1.09003 * 109.88373 * 298.39835 * 16 15 13 40 40 H 1.08993 * 109.88053 * 59.56578 * 16 15 13 41 41 H 1.08995 * 110.85297 * 219.67625 * 17 16 15 42 42 H 1.09002 * 110.66533 * 96.52140 * 17 16 15 43 43 H 0.97001 * 119.99992 * 272.79830 * 20 18 17 44 44 H 0.97002 * 119.99641 * 180.02562 * 24 23 21 45 45 H 1.08997 * 110.36468 * 322.92879 * 29 15 13 46 46 H 1.09002 * 110.36909 * 85.13942 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5807 -1.1970 0.0074 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0005 9 1 0.4412 -2.4656 0.4249 10 6 2.2529 -3.7846 0.2074 11 6 1.6811 -3.4550 -1.1729 12 1 2.3818 -3.1379 -1.9452 13 6 0.5091 -4.2712 -1.6536 14 8 -0.5708 -4.1584 -1.1132 15 7 0.6609 -5.1267 -2.6839 16 6 1.9066 -5.3565 -3.4304 17 6 1.6110 -6.4353 -4.4936 18 6 0.3615 -7.1563 -3.9222 19 1 0.6467 -7.9075 -3.1858 20 7 -0.4372 -7.7529 -4.9957 21 6 -0.2261 -9.0549 -5.3636 22 1 0.5289 -9.6421 -4.8621 23 6 -0.9834 -9.6203 -6.3803 24 7 -0.7801 -10.8717 -6.7342 25 14 -2.2898 -8.6048 -7.2472 26 1 -1.6866 -7.9170 -8.4169 27 1 -3.3847 -9.4961 -7.7076 28 1 -2.8365 -7.5944 -6.3063 29 6 -0.3959 -5.9828 -3.2528 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6583 2.1326 -0.0004 34 1 4.1205 2.1326 0.0010 35 1 5.3517 -0.0001 0.0024 36 1 4.1206 -2.1323 0.0128 37 1 3.3298 -3.6843 0.3431 38 1 1.7813 -4.5918 0.7679 39 1 2.2242 -4.4330 -3.9147 40 1 2.6846 -5.7091 -2.7535 41 1 2.4473 -7.1282 -4.5862 42 1 1.3846 -5.9755 -5.4556 43 1 -1.1156 -7.2256 -5.4458 44 1 -1.3090 -11.2667 -7.4449 45 1 -1.0493 -6.3540 -2.4634 46 1 -0.9737 -5.4303 -3.9939 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019500432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:27 Heat of formation + Delta-G solvation = 29.972495 kcal Electronic energy + Delta-G solvation = -25262.981301 eV Core-core repulsion = 21732.391426 eV Total energy + Delta-G solvation = -3530.589875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.58087 -39.57538 -37.77251 -36.26420 -34.30009 -33.10962 -31.68966 -30.86567 -29.86986 -28.34313 -27.15287 -24.99245 -24.20377 -22.91942 -22.43399 -21.69196 -20.48178 -20.24230 -18.92441 -17.82455 -17.56454 -16.62502 -16.16546 -15.85871 -15.25073 -15.15944 -14.69747 -14.38672 -14.05563 -13.89011 -13.82025 -13.41129 -13.34440 -13.03415 -12.66518 -12.52007 -12.48076 -12.41064 -12.14429 -12.11241 -11.87130 -11.47912 -11.43960 -11.18089 -10.94912 -10.89555 -10.75905 -10.67892 -10.49307 -10.11454 -9.81868 -9.67124 -9.05091 -9.02323 -8.73711 -8.51789 -7.39475 -5.85175 -3.23013 1.00302 1.10155 2.48861 2.96454 3.33414 3.36547 3.36928 3.41913 3.82025 4.22002 4.45502 4.52126 4.56464 4.59650 4.65189 4.74532 4.79014 4.88963 4.95841 5.05470 5.15522 5.21979 5.26324 5.36522 5.40305 5.42289 5.43299 5.51156 5.59663 5.61601 5.68378 5.78853 5.82748 5.84731 5.85067 5.94783 6.10550 6.22430 6.22967 6.23486 6.40581 6.42956 6.49998 6.72267 6.74079 7.61735 7.88508 8.21136 8.33150 9.09602 9.81991 10.00041 11.32441 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027476 B = 0.002414 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.831728 B =11594.076448 C =11888.619807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.053 4.053 8 C -0.086 4.086 9 H 0.128 0.872 10 C -0.144 4.144 11 C -0.170 4.170 12 H 0.124 0.876 13 C 0.556 3.444 14 O -0.546 6.546 15 N -0.609 5.609 16 C 0.102 3.898 17 C -0.155 4.155 18 C 0.178 3.822 19 H 0.076 0.924 20 N -0.738 5.738 21 C -0.250 4.250 22 H 0.092 0.908 23 C 0.009 3.991 24 N -0.930 5.930 25 Si 0.884 3.116 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.276 1.276 29 C 0.095 3.905 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.364 0.636 44 H 0.261 0.739 45 H 0.078 0.922 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.322 23.447 14.447 29.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.142 4.142 6 C -0.134 4.134 7 C -0.053 4.053 8 C -0.105 4.105 9 H 0.146 0.854 10 C -0.181 4.181 11 C -0.191 4.191 12 H 0.141 0.859 13 C 0.344 3.656 14 O -0.424 6.424 15 N -0.342 5.342 16 C -0.021 4.021 17 C -0.196 4.196 18 C 0.066 3.934 19 H 0.094 0.906 20 N -0.379 5.379 21 C -0.379 4.379 22 H 0.110 0.890 23 C -0.188 4.188 24 N -0.576 5.576 25 Si 0.714 3.286 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.202 1.202 29 C -0.029 4.029 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.197 0.803 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.790 23.268 14.746 29.235 hybrid contribution -0.749 0.671 -0.943 1.379 sum 9.041 23.939 13.803 29.075 Atomic orbital electron populations 1.20886 0.91004 1.03376 1.02560 1.19767 0.96271 0.92330 0.98959 1.21033 0.94287 0.97390 1.01104 1.21134 0.94306 0.98076 1.00386 1.21096 0.99826 0.92422 1.00895 1.21067 0.93521 0.98386 1.00394 1.19001 0.93016 0.92720 1.00551 1.21099 1.00887 0.87849 1.00631 0.85369 1.23134 1.00331 0.98794 0.95814 1.22296 1.00205 1.03042 0.93561 0.85853 1.19197 0.88606 0.79021 0.78743 1.90688 1.27686 1.67004 1.56994 1.48327 1.12871 1.40719 1.32263 1.22115 0.86434 0.99270 0.94328 1.23391 1.01670 0.96911 0.97676 1.21253 0.89672 0.91985 0.90489 0.90637 1.42619 1.42669 1.12260 1.40382 1.19040 1.17402 0.86380 1.15127 0.88984 1.24679 0.99290 0.95906 0.98910 1.69699 1.43203 1.12229 1.32509 0.86567 0.82338 0.79758 0.79981 1.20968 1.21591 1.20196 1.22614 0.90570 0.91664 0.98010 0.91011 0.91585 0.90592 0.86055 0.86171 0.86078 0.85790 0.87412 0.87613 0.91982 0.91503 0.90146 0.90726 0.80310 0.92899 0.90324 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.33 36.01 0.34 -0.72 16 2 C -0.07 -0.70 5.88 -104.62 -0.62 -1.31 16 3 C -0.12 -1.01 9.70 -39.59 -0.38 -1.39 16 4 C -0.12 -0.94 10.05 -39.59 -0.40 -1.33 16 5 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 6 C -0.12 -0.99 9.30 -39.58 -0.37 -1.35 16 7 C -0.05 -0.51 5.61 -104.62 -0.59 -1.10 16 8 C -0.09 -0.89 4.66 -91.77 -0.43 -1.32 16 9 H 0.13 1.48 6.43 -51.93 -0.33 1.15 16 10 C -0.14 -1.30 9.56 -26.73 -0.26 -1.56 16 11 C -0.17 -1.86 5.18 -91.77 -0.47 -2.33 16 12 H 0.12 1.20 7.74 -51.93 -0.40 0.79 16 13 C 0.56 8.21 7.63 -10.99 -0.08 8.12 16 14 O -0.55 -9.85 16.51 5.56 0.09 -9.75 16 15 N -0.61 -8.92 3.33 -170.53 -0.57 -9.48 16 16 C 0.10 1.25 6.28 -3.06 -0.02 1.23 16 17 C -0.16 -2.35 6.64 -24.89 -0.17 -2.51 16 18 C 0.18 3.23 3.71 -65.79 -0.24 2.99 16 19 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 20 N -0.74 -16.68 5.05 -51.36 -0.26 -16.94 16 21 C -0.25 -6.77 10.44 -15.06 -0.16 -6.93 16 22 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 23 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 24 N -0.93 -28.50 13.97 55.49 0.78 -27.73 16 25 Si 0.88 21.60 27.74 -169.99 -4.71 16.88 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 29 C 0.09 1.59 6.55 -2.54 -0.02 1.57 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.08 0.77 6.65 -51.93 -0.35 0.43 16 33 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 34 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 35 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 36 H 0.12 0.85 6.02 -52.49 -0.32 0.54 16 37 H 0.11 0.74 6.17 -51.93 -0.32 0.42 16 38 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.66 8.06 -51.93 -0.42 0.24 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.36 8.14 5.63 -40.82 -0.23 7.91 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 45 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 46 H 0.06 1.10 8.01 -51.93 -0.42 0.69 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -32.26 373.57 -10.41 -42.67 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.01 Total: 7.89 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -4.36 Total: -9.17 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.05 Total: -54.15 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.26 -10.41 -42.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019500432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.646 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds