Wall clock time and date at job start Tue Mar 31 2020 10:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38253 * 120.00332 * 2 1 4 4 C 1.38210 * 120.00312 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99825 * 359.97438 * 4 3 2 6 6 C 1.38213 * 120.00285 * 359.74892 * 5 4 3 7 7 C 1.38214 * 119.99838 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99939 * 0.02562 * 7 2 1 9 9 H 1.09002 * 115.55088 * 334.41165 * 8 7 2 10 10 C 1.53005 * 117.49691 * 188.74235 * 8 7 2 11 11 C 1.52999 * 59.99973 * 252.48494 * 10 8 7 12 12 H 1.08995 * 117.49529 * 107.48826 * 11 10 8 13 13 C 1.50693 * 117.50064 * 252.51042 * 11 10 8 14 14 O 1.21280 * 119.99991 * 68.62189 * 13 11 10 15 15 N 1.34778 * 120.00264 * 248.62816 * 13 11 10 16 16 C 1.47026 * 125.64503 * 359.68530 * 15 13 11 17 17 C 1.54333 * 107.26543 * 178.85251 * 16 15 13 18 18 C 1.55159 * 103.01998 * 338.14374 * 17 16 15 19 19 H 1.08995 * 111.00178 * 277.23180 * 18 17 16 20 20 N 1.46499 * 111.00424 * 153.38034 * 18 17 16 21 21 C 1.36942 * 120.00084 * 92.80148 * 20 18 17 22 22 H 1.07995 * 120.00044 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99803 * 179.97438 * 21 20 18 24 24 N 1.31622 * 119.99478 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00159 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46863 * 90.00265 * 25 23 21 27 27 H 1.48498 * 109.46937 * 209.99675 * 25 23 21 28 28 H 1.48500 * 109.47151 * 329.99835 * 25 23 21 29 29 C 1.47425 * 125.65117 * 179.97438 * 15 13 11 30 30 H 1.09000 * 109.46732 * 270.02154 * 1 2 3 31 31 H 1.08999 * 109.46918 * 30.01904 * 1 2 3 32 32 H 1.09000 * 109.47183 * 150.02209 * 1 2 3 33 33 H 1.08007 * 119.99613 * 359.97438 * 3 2 1 34 34 H 1.08007 * 120.00105 * 180.02562 * 4 3 2 35 35 H 1.08005 * 120.00166 * 180.02562 * 5 4 3 36 36 H 1.07995 * 120.00382 * 180.27761 * 6 5 4 37 37 H 1.09004 * 117.49602 * 359.97438 * 10 8 7 38 38 H 1.09004 * 117.49360 * 144.99546 * 10 8 7 39 39 H 1.09003 * 109.88373 * 298.39835 * 16 15 13 40 40 H 1.08993 * 109.88053 * 59.56578 * 16 15 13 41 41 H 1.08995 * 110.85297 * 219.67625 * 17 16 15 42 42 H 1.09002 * 110.66533 * 96.52140 * 17 16 15 43 43 H 0.97001 * 119.99992 * 272.79830 * 20 18 17 44 44 H 0.97002 * 119.99641 * 180.02562 * 24 23 21 45 45 H 1.08997 * 110.36468 * 322.92879 * 29 15 13 46 46 H 1.09002 * 110.36909 * 85.13942 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5807 -1.1970 0.0074 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0005 9 1 0.4412 -2.4656 0.4249 10 6 2.2529 -3.7846 0.2074 11 6 1.6811 -3.4550 -1.1729 12 1 2.3818 -3.1379 -1.9452 13 6 0.5091 -4.2712 -1.6536 14 8 -0.5708 -4.1584 -1.1132 15 7 0.6609 -5.1267 -2.6839 16 6 1.9066 -5.3565 -3.4304 17 6 1.6110 -6.4353 -4.4936 18 6 0.3615 -7.1563 -3.9222 19 1 0.6467 -7.9075 -3.1858 20 7 -0.4372 -7.7529 -4.9957 21 6 -0.2261 -9.0549 -5.3636 22 1 0.5289 -9.6421 -4.8621 23 6 -0.9834 -9.6203 -6.3803 24 7 -0.7801 -10.8717 -6.7342 25 14 -2.2898 -8.6048 -7.2472 26 1 -1.6866 -7.9170 -8.4169 27 1 -3.3847 -9.4961 -7.7076 28 1 -2.8365 -7.5944 -6.3063 29 6 -0.3959 -5.9828 -3.2528 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6583 2.1326 -0.0004 34 1 4.1205 2.1326 0.0010 35 1 5.3517 -0.0001 0.0024 36 1 4.1206 -2.1323 0.0128 37 1 3.3298 -3.6843 0.3431 38 1 1.7813 -4.5918 0.7679 39 1 2.2242 -4.4330 -3.9147 40 1 2.6846 -5.7091 -2.7535 41 1 2.4473 -7.1282 -4.5862 42 1 1.3846 -5.9755 -5.4556 43 1 -1.1156 -7.2256 -5.4458 44 1 -1.3090 -11.2667 -7.4449 45 1 -1.0493 -6.3540 -2.4634 46 1 -0.9737 -5.4303 -3.9939 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019500432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:26 Heat of formation + Delta-G solvation = 11.873136 kcal Electronic energy + Delta-G solvation = -25263.766148 eV Core-core repulsion = 21732.391426 eV Total energy + Delta-G solvation = -3531.374722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52368 -40.45832 -38.96736 -37.20271 -36.05432 -33.73182 -33.55688 -31.63510 -31.22268 -29.73047 -27.80054 -26.29262 -24.91384 -24.60671 -23.52400 -22.31066 -21.79863 -21.13802 -19.99296 -19.76634 -18.56911 -17.52180 -17.35543 -16.87013 -16.37537 -16.08301 -15.87573 -15.58864 -15.32537 -14.95913 -14.73904 -14.67950 -14.48950 -14.16516 -13.91572 -13.58995 -13.51616 -13.33978 -13.20912 -13.16893 -13.05639 -12.82029 -12.67193 -12.32567 -12.21603 -12.06129 -11.87003 -11.83294 -11.62447 -11.59806 -11.41207 -11.00752 -10.98029 -9.72985 -9.64809 -9.37725 -9.36710 -8.03942 -5.39130 0.37853 0.50848 1.38709 1.40602 1.41384 1.47662 1.84146 2.46956 2.66504 3.07160 3.24361 3.36541 3.50507 3.64506 3.75713 3.81877 3.90363 3.99644 4.02736 4.10880 4.18906 4.21299 4.26873 4.31700 4.42507 4.45692 4.65321 4.66986 4.73725 4.75572 4.79114 4.82378 4.90944 4.94280 4.98091 5.12382 5.18226 5.20447 5.23898 5.31039 5.37163 5.62585 5.65787 5.74751 5.77494 6.14818 6.19234 6.47661 7.03030 7.06049 7.77781 7.96457 9.16815 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027476 B = 0.002414 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.831728 B =11594.076448 C =11888.619807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.129 4.129 6 C -0.120 4.120 7 C -0.068 4.068 8 C -0.087 4.087 9 H 0.107 0.893 10 C -0.126 4.126 11 C -0.172 4.172 12 H 0.144 0.856 13 C 0.551 3.449 14 O -0.587 6.587 15 N -0.610 5.610 16 C 0.108 3.892 17 C -0.146 4.146 18 C 0.169 3.831 19 H 0.064 0.936 20 N -0.743 5.743 21 C -0.230 4.230 22 H 0.063 0.937 23 C -0.060 4.060 24 N -0.980 5.980 25 Si 0.951 3.049 26 H -0.276 1.276 27 H -0.298 1.298 28 H -0.255 1.255 29 C 0.103 3.897 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.367 0.633 44 H 0.258 0.742 45 H 0.062 0.938 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.343 26.301 14.873 32.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.138 4.138 7 C -0.068 4.068 8 C -0.106 4.106 9 H 0.125 0.875 10 C -0.163 4.163 11 C -0.192 4.192 12 H 0.162 0.838 13 C 0.341 3.659 14 O -0.468 6.468 15 N -0.342 5.342 16 C -0.014 4.014 17 C -0.186 4.186 18 C 0.059 3.941 19 H 0.082 0.918 20 N -0.385 5.385 21 C -0.361 4.361 22 H 0.081 0.919 23 C -0.252 4.252 24 N -0.630 5.630 25 Si 0.778 3.222 26 H -0.202 1.202 27 H -0.224 1.224 28 H -0.180 1.180 29 C -0.021 4.021 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.200 0.800 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.854 26.178 15.205 32.511 hybrid contribution -1.315 -0.191 -0.958 1.638 sum 10.539 25.986 14.247 31.454 Atomic orbital electron populations 1.20838 0.91204 1.02789 1.02649 1.19953 0.96464 0.93046 0.99865 1.21265 0.94955 0.97531 1.00976 1.21471 0.94163 0.99221 0.99423 1.21433 1.01085 0.92116 1.00018 1.21295 0.92947 0.99591 0.99930 1.19039 0.93730 0.92186 1.01819 1.20989 1.00441 0.88939 1.00231 0.87545 1.23267 1.01776 0.97569 0.93687 1.22255 0.99153 1.03124 0.94716 0.83801 1.19901 0.89210 0.78738 0.78002 1.90669 1.29667 1.68271 1.58226 1.48397 1.13034 1.40292 1.32488 1.22223 0.85768 0.99559 0.93827 1.23213 0.99661 0.97417 0.98353 1.21396 0.90875 0.92310 0.89473 0.91757 1.42576 1.43599 1.10841 1.41523 1.18990 1.15560 0.87775 1.13766 0.91879 1.25454 1.02196 0.97077 1.00433 1.69869 1.45012 1.14357 1.33754 0.85473 0.79200 0.78359 0.79129 1.20173 1.22448 1.18026 1.22317 0.90927 0.91478 0.97415 0.90666 0.90598 0.92637 0.84720 0.84062 0.83832 0.84009 0.84407 0.88368 0.89182 0.88919 0.89789 0.91005 0.79990 0.93287 0.91922 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 9.33 71.24 0.66 -1.39 16 2 C -0.09 -1.68 5.88 -19.86 -0.12 -1.79 16 3 C -0.13 -1.93 9.70 22.27 0.22 -1.71 16 4 C -0.12 -1.58 10.05 22.27 0.22 -1.35 16 5 C -0.13 -1.57 10.05 22.27 0.22 -1.35 16 6 C -0.12 -1.67 9.30 22.27 0.21 -1.46 16 7 C -0.07 -1.20 5.61 -19.86 -0.11 -1.31 16 8 C -0.09 -1.71 4.66 -11.54 -0.05 -1.76 16 9 H 0.11 2.54 6.43 -2.39 -0.02 2.53 16 10 C -0.13 -1.97 9.56 30.60 0.29 -1.68 16 11 C -0.17 -3.37 5.18 -11.54 -0.06 -3.43 16 12 H 0.14 2.24 7.74 -2.39 -0.02 2.22 16 13 C 0.55 15.71 7.63 87.65 0.67 16.37 16 14 O -0.59 -21.50 16.51 -3.03 -0.05 -21.55 16 15 N -0.61 -16.86 3.33 -811.83 -2.70 -19.56 16 16 C 0.11 2.30 6.28 86.73 0.54 2.85 16 17 C -0.15 -4.11 6.64 31.79 0.21 -3.90 16 18 C 0.17 6.06 3.71 46.38 0.17 6.24 16 19 H 0.06 2.45 8.09 -2.39 -0.02 2.43 16 20 N -0.74 -33.34 5.05 -316.42 -1.60 -34.94 16 21 C -0.23 -12.65 10.44 84.03 0.88 -11.78 16 22 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 23 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 24 N -0.98 -61.71 13.97 21.65 0.30 -61.40 16 25 Si 0.95 44.83 27.74 68.60 1.90 46.74 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 28 H -0.26 -11.02 6.52 99.48 0.65 -10.37 16 29 C 0.10 3.40 6.55 86.85 0.57 3.96 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 32 H 0.05 1.18 6.65 -2.39 -0.02 1.16 16 33 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.14 1.06 8.06 -2.91 -0.02 1.03 16 36 H 0.14 1.35 6.02 -2.91 -0.02 1.33 16 37 H 0.14 1.32 6.17 -2.39 -0.01 1.31 16 38 H 0.10 1.71 8.14 -2.38 -0.02 1.70 16 39 H 0.09 1.51 8.06 -2.39 -0.02 1.49 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.37 15.98 5.63 -92.71 -0.52 15.46 16 44 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 45 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 46 H 0.06 2.13 8.01 -2.39 -0.02 2.11 16 Total: -1.00 -72.07 373.57 3.26 -68.81 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.40 Total: 28.38 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 5.00 Total: -6.47 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -3.99 Total: -115.90 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.05 Total: -21.55 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.74 kcal Total: -72.07 3.26 -68.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019500432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.687 kcal (2) G-P(sol) polarization free energy of solvation -72.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds