Wall clock time and date at job start Tue Mar 31 2020 11:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 115.56016 * 2 1 4 4 C 1.38239 * 120.00338 * 38.90322 * 3 2 1 5 5 C 1.38227 * 120.00253 * 179.76537 * 4 3 2 6 6 C 1.38238 * 120.00004 * 0.50519 * 5 4 3 7 7 C 1.38239 * 120.00061 * 359.74634 * 6 5 4 8 8 C 1.38236 * 119.99621 * 0.02562 * 7 6 5 9 9 C 1.53007 * 117.49907 * 214.31204 * 2 1 3 10 10 C 1.53008 * 60.03002 * 252.52347 * 9 2 1 11 11 H 1.08996 * 117.49736 * 107.47780 * 10 9 2 12 12 C 1.50698 * 117.49666 * 252.47587 * 10 9 2 13 13 O 1.21280 * 120.00346 * 115.99928 * 12 10 9 14 14 N 1.34780 * 120.00049 * 295.99943 * 12 10 9 15 15 C 1.46495 * 120.00215 * 180.02562 * 14 12 10 16 16 H 1.09003 * 112.84954 * 336.19757 * 15 14 12 17 17 C 1.53779 * 113.61730 * 107.49758 * 15 14 12 18 18 C 1.53790 * 87.07931 * 89.11843 * 17 15 14 19 19 H 1.08999 * 113.69167 * 270.87718 * 18 17 15 20 20 N 1.46495 * 113.61342 * 139.98252 * 18 17 15 21 21 C 1.36939 * 120.00024 * 107.50434 * 20 18 17 22 22 H 1.07997 * 119.99942 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00195 * 180.02562 * 21 20 18 24 24 N 1.31618 * 119.99808 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00077 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47308 * 59.99902 * 25 23 21 27 27 H 1.48502 * 109.47404 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47208 * 299.99601 * 25 23 21 29 29 C 1.53775 * 113.61686 * 204.99934 * 15 14 12 30 30 H 1.09002 * 109.47074 * 154.29649 * 1 2 3 31 31 H 1.08997 * 109.46649 * 274.29680 * 1 2 3 32 32 H 1.08999 * 109.47152 * 34.29780 * 1 2 3 33 33 H 1.07999 * 119.99646 * 359.97438 * 4 3 2 34 34 H 1.07999 * 120.00404 * 180.22901 * 5 4 3 35 35 H 1.08004 * 119.99942 * 179.72821 * 6 5 4 36 36 H 1.07991 * 120.00171 * 179.97438 * 7 6 5 37 37 H 1.08002 * 119.99857 * 179.97438 * 8 7 6 38 38 H 1.09001 * 117.49712 * 145.01958 * 9 2 1 39 39 H 1.08998 * 117.49601 * 0.02562 * 9 2 1 40 40 H 0.97001 * 119.99988 * 0.02562 * 14 12 10 41 41 H 1.08995 * 113.62054 * 203.66650 * 17 15 14 42 42 H 1.09004 * 113.61533 * 334.57478 * 17 15 14 43 43 H 0.96998 * 119.99941 * 287.50576 * 20 18 17 44 44 H 0.97007 * 119.99976 * 179.97438 * 24 23 21 45 45 H 1.08997 * 113.61836 * 25.42969 * 29 15 14 46 46 H 1.09004 * 113.61439 * 156.33453 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1802 1.3595 0.0000 4 6 1.6380 2.3850 0.7518 5 6 2.2372 3.6307 0.7556 6 6 3.3727 3.8538 -0.0006 7 6 3.9120 2.8298 -0.7565 8 6 3.3154 1.5827 -0.7566 9 6 2.2365 -1.1210 -0.7651 10 6 2.2367 -1.1219 0.7650 11 1 1.6113 -1.8594 1.2679 12 6 3.5298 -0.7833 1.4608 13 8 3.6053 0.2119 2.1498 14 7 4.6026 -1.5866 1.3175 15 6 5.8595 -1.2578 1.9944 16 1 5.9510 -0.1964 2.2250 17 6 6.1773 -2.1781 3.1847 18 6 6.8958 -3.0963 2.1817 19 1 6.2450 -3.8441 1.7286 20 7 8.1439 -3.6649 2.6965 21 6 8.2047 -4.9911 3.0323 22 1 7.3325 -5.6176 2.9181 23 6 9.3872 -5.5299 3.5206 24 7 10.4500 -4.7662 3.6603 25 14 9.4704 -7.3390 3.9781 26 1 9.1658 -8.1663 2.7831 27 1 10.8337 -7.6632 4.4695 28 1 8.4780 -7.6260 5.0449 29 6 7.1020 -1.8482 1.3072 30 1 -0.3633 -0.9260 -0.4457 31 1 -0.3632 0.0770 1.0248 32 1 -0.3633 0.8490 -0.5791 33 1 0.7482 2.2121 1.3389 34 1 1.8157 4.4309 1.3459 35 1 3.8383 4.8283 -0.0011 36 1 4.7988 3.0041 -1.3476 37 1 3.7365 0.7827 -1.3475 38 1 3.1716 -0.8751 -1.2683 39 1 1.6113 -1.8582 -1.2687 40 1 4.5424 -2.3824 0.7662 41 1 6.8445 -1.7273 3.9193 42 1 5.2937 -2.6304 3.6351 43 1 8.9271 -3.1021 2.7994 44 1 11.2762 -5.1426 4.0019 45 1 6.9650 -2.0340 0.2420 46 1 8.0220 -1.3071 1.5286 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020412039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:54 Heat of formation + Delta-G solvation = 47.041604 kcal Electronic energy + Delta-G solvation = -25661.998289 eV Core-core repulsion = 22132.148587 eV Total energy + Delta-G solvation = -3529.849702 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.69379 -39.30872 -38.02044 -36.76569 -33.98472 -32.53700 -31.17092 -30.68254 -29.86078 -28.78710 -25.15235 -25.09671 -23.98977 -23.31932 -22.44698 -22.03629 -20.59028 -19.49300 -18.88042 -17.68193 -17.07891 -16.46716 -15.87710 -15.56400 -14.97450 -14.94973 -14.81204 -14.43236 -13.99568 -13.76505 -13.59386 -13.50417 -13.46130 -13.09415 -12.69659 -12.61578 -12.36079 -12.11062 -11.99129 -11.84346 -11.65779 -11.24582 -11.12116 -10.89683 -10.82313 -10.63028 -10.38622 -10.28721 -10.24551 -9.91348 -9.63700 -9.54921 -8.93658 -8.90522 -8.75884 -8.58685 -6.98674 -5.80345 -3.09382 1.28011 1.38642 2.72111 3.09312 3.40631 3.41671 3.46221 3.47279 3.82417 4.27436 4.40092 4.53744 4.57066 4.62466 4.88975 4.92133 5.00421 5.02279 5.14847 5.23887 5.28314 5.37571 5.42188 5.45840 5.47429 5.51229 5.56838 5.61115 5.70211 5.81889 5.87730 5.94675 5.96991 5.98496 6.17738 6.26136 6.33623 6.42718 6.46851 6.54583 6.55194 6.65350 6.71998 6.95881 7.10506 7.66047 7.68578 8.38016 8.39003 9.49172 10.06835 10.41235 11.41964 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.002623 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.105416 B =10670.270203 C =11305.880971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.060 4.060 3 C -0.034 4.034 4 C -0.097 4.097 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.116 4.116 8 C -0.116 4.116 9 C -0.158 4.158 10 C -0.169 4.169 11 H 0.134 0.866 12 C 0.541 3.459 13 O -0.526 6.526 14 N -0.704 5.704 15 C 0.118 3.882 16 H 0.094 0.906 17 C -0.176 4.176 18 C 0.167 3.833 19 H 0.073 0.927 20 N -0.712 5.712 21 C -0.246 4.246 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.159 4.159 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.400 0.600 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.386 0.614 44 H 0.257 0.743 45 H 0.063 0.937 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.190 13.390 -11.441 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.061 4.061 3 C -0.034 4.034 4 C -0.115 4.115 5 C -0.136 4.136 6 C -0.142 4.142 7 C -0.134 4.134 8 C -0.134 4.134 9 C -0.195 4.195 10 C -0.190 4.190 11 H 0.151 0.849 12 C 0.327 3.673 13 O -0.402 6.402 14 N -0.354 5.354 15 C 0.012 3.988 16 H 0.112 0.888 17 C -0.218 4.218 18 C 0.055 3.945 19 H 0.091 0.909 20 N -0.350 5.350 21 C -0.377 4.377 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.199 4.199 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.234 0.766 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.101 13.901 -10.891 26.757 hybrid contribution 0.456 -1.314 0.253 1.414 sum -19.645 12.588 -10.638 25.643 Atomic orbital electron populations 1.21360 0.90683 1.02516 1.02468 1.20204 0.94771 0.88114 1.03002 1.18820 0.95076 0.92714 0.96810 1.20809 1.00022 0.92614 0.98079 1.21066 0.96294 0.97049 0.99205 1.21096 0.96532 0.99032 0.97566 1.21049 0.99605 0.93254 0.99535 1.20972 0.95659 0.97208 0.99560 1.23370 1.03215 1.00625 0.92269 1.22479 0.97935 1.03331 0.95255 0.84871 1.19521 0.83881 0.82937 0.81007 1.90717 1.83654 1.26530 1.39285 1.45683 1.11104 1.27704 1.50952 1.21784 0.82661 0.99527 0.94820 0.88833 1.24297 1.00821 0.98972 0.97731 1.21613 0.89471 0.91269 0.92151 0.90885 1.42396 1.08644 1.08516 1.75464 1.19247 0.96383 0.86128 1.35921 0.91185 1.24768 0.95949 0.98089 1.02034 1.69650 1.01669 1.34879 1.51810 0.86263 0.76682 0.84943 0.78260 1.21230 1.21652 1.21225 1.23847 0.96990 0.99591 0.99435 0.91759 0.91669 0.91498 0.86410 0.86331 0.86418 0.86321 0.86466 0.87831 0.87345 0.76616 0.89698 0.92500 0.78020 0.93365 0.91847 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.01 37.16 0.33 -0.47 16 2 C -0.06 -0.56 2.52 -155.62 -0.39 -0.96 16 3 C -0.03 -0.39 3.63 -104.62 -0.38 -0.77 16 4 C -0.10 -1.10 9.33 -39.59 -0.37 -1.47 16 5 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 6 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 7 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 8 C -0.12 -1.33 9.03 -39.58 -0.36 -1.69 16 9 C -0.16 -1.24 9.21 -26.72 -0.25 -1.49 16 10 C -0.17 -1.69 5.86 -91.73 -0.54 -2.23 16 11 H 0.13 1.14 8.14 -51.93 -0.42 0.71 16 12 C 0.54 7.42 6.62 -10.98 -0.07 7.35 16 13 O -0.53 -9.25 15.41 5.56 0.09 -9.17 16 14 N -0.70 -9.19 5.26 -53.02 -0.28 -9.47 16 15 C 0.12 1.82 4.32 -67.12 -0.29 1.53 16 16 H 0.09 1.57 7.46 -51.93 -0.39 1.18 16 17 C -0.18 -3.16 7.68 -25.92 -0.20 -3.36 16 18 C 0.17 3.22 4.36 -67.12 -0.29 2.93 16 19 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 20 N -0.71 -17.68 5.40 -52.64 -0.28 -17.96 16 21 C -0.25 -6.76 9.97 -15.06 -0.15 -6.91 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 25 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 C -0.16 -2.54 7.58 -25.92 -0.20 -2.73 16 30 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.45 8.06 -51.93 -0.42 0.03 16 33 H 0.12 1.16 7.62 -52.49 -0.40 0.76 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 1.20 5.96 -52.49 -0.31 0.88 16 38 H 0.10 0.83 6.11 -51.93 -0.32 0.52 16 39 H 0.11 0.62 8.05 -51.93 -0.42 0.21 16 40 H 0.40 4.38 8.70 -40.82 -0.36 4.02 16 41 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.39 10.17 7.92 -40.82 -0.32 9.85 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.09 1.49 8.12 -51.93 -0.42 1.07 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -33.00 379.78 -10.60 -43.60 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -7.11 Total: 13.17 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -4.44 Total: -15.79 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.16 Total: -54.75 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.00 -10.60 -43.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020412039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.645 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds