Wall clock time and date at job start Tue Mar 31 2020 11:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 115.56016 * 2 1 4 4 C 1.38239 * 120.00338 * 38.90322 * 3 2 1 5 5 C 1.38227 * 120.00253 * 179.76537 * 4 3 2 6 6 C 1.38238 * 120.00004 * 0.50519 * 5 4 3 7 7 C 1.38239 * 120.00061 * 359.74634 * 6 5 4 8 8 C 1.38236 * 119.99621 * 0.02562 * 7 6 5 9 9 C 1.53007 * 117.49907 * 214.31204 * 2 1 3 10 10 C 1.53008 * 60.03002 * 252.52347 * 9 2 1 11 11 H 1.08996 * 117.49736 * 107.47780 * 10 9 2 12 12 C 1.50698 * 117.49666 * 252.47587 * 10 9 2 13 13 O 1.21280 * 120.00346 * 115.99928 * 12 10 9 14 14 N 1.34780 * 120.00049 * 295.99943 * 12 10 9 15 15 C 1.46495 * 120.00215 * 180.02562 * 14 12 10 16 16 H 1.09003 * 112.84954 * 336.19757 * 15 14 12 17 17 C 1.53779 * 113.61730 * 107.49758 * 15 14 12 18 18 C 1.53790 * 87.07931 * 89.11843 * 17 15 14 19 19 H 1.08999 * 113.69167 * 270.87718 * 18 17 15 20 20 N 1.46495 * 113.61342 * 139.98252 * 18 17 15 21 21 C 1.36939 * 120.00024 * 107.50434 * 20 18 17 22 22 H 1.07997 * 119.99942 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00195 * 180.02562 * 21 20 18 24 24 N 1.31618 * 119.99808 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00077 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47308 * 59.99902 * 25 23 21 27 27 H 1.48502 * 109.47404 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47208 * 299.99601 * 25 23 21 29 29 C 1.53775 * 113.61686 * 204.99934 * 15 14 12 30 30 H 1.09002 * 109.47074 * 154.29649 * 1 2 3 31 31 H 1.08997 * 109.46649 * 274.29680 * 1 2 3 32 32 H 1.08999 * 109.47152 * 34.29780 * 1 2 3 33 33 H 1.07999 * 119.99646 * 359.97438 * 4 3 2 34 34 H 1.07999 * 120.00404 * 180.22901 * 5 4 3 35 35 H 1.08004 * 119.99942 * 179.72821 * 6 5 4 36 36 H 1.07991 * 120.00171 * 179.97438 * 7 6 5 37 37 H 1.08002 * 119.99857 * 179.97438 * 8 7 6 38 38 H 1.09001 * 117.49712 * 145.01958 * 9 2 1 39 39 H 1.08998 * 117.49601 * 0.02562 * 9 2 1 40 40 H 0.97001 * 119.99988 * 0.02562 * 14 12 10 41 41 H 1.08995 * 113.62054 * 203.66650 * 17 15 14 42 42 H 1.09004 * 113.61533 * 334.57478 * 17 15 14 43 43 H 0.96998 * 119.99941 * 287.50576 * 20 18 17 44 44 H 0.97007 * 119.99976 * 179.97438 * 24 23 21 45 45 H 1.08997 * 113.61836 * 25.42969 * 29 15 14 46 46 H 1.09004 * 113.61439 * 156.33453 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1802 1.3595 0.0000 4 6 1.6380 2.3850 0.7518 5 6 2.2372 3.6307 0.7556 6 6 3.3727 3.8538 -0.0006 7 6 3.9120 2.8298 -0.7565 8 6 3.3154 1.5827 -0.7566 9 6 2.2365 -1.1210 -0.7651 10 6 2.2367 -1.1219 0.7650 11 1 1.6113 -1.8594 1.2679 12 6 3.5298 -0.7833 1.4608 13 8 3.6053 0.2119 2.1498 14 7 4.6026 -1.5866 1.3175 15 6 5.8595 -1.2578 1.9944 16 1 5.9510 -0.1964 2.2250 17 6 6.1773 -2.1781 3.1847 18 6 6.8958 -3.0963 2.1817 19 1 6.2450 -3.8441 1.7286 20 7 8.1439 -3.6649 2.6965 21 6 8.2047 -4.9911 3.0323 22 1 7.3325 -5.6176 2.9181 23 6 9.3872 -5.5299 3.5206 24 7 10.4500 -4.7662 3.6603 25 14 9.4704 -7.3390 3.9781 26 1 9.1658 -8.1663 2.7831 27 1 10.8337 -7.6632 4.4695 28 1 8.4780 -7.6260 5.0449 29 6 7.1020 -1.8482 1.3072 30 1 -0.3633 -0.9260 -0.4457 31 1 -0.3632 0.0770 1.0248 32 1 -0.3633 0.8490 -0.5791 33 1 0.7482 2.2121 1.3389 34 1 1.8157 4.4309 1.3459 35 1 3.8383 4.8283 -0.0011 36 1 4.7988 3.0041 -1.3476 37 1 3.7365 0.7827 -1.3475 38 1 3.1716 -0.8751 -1.2683 39 1 1.6113 -1.8582 -1.2687 40 1 4.5424 -2.3824 0.7662 41 1 6.8445 -1.7273 3.9193 42 1 5.2937 -2.6304 3.6351 43 1 8.9271 -3.1021 2.7994 44 1 11.2762 -5.1426 4.0019 45 1 6.9650 -2.0340 0.2420 46 1 8.0220 -1.3071 1.5286 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020412039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:53 Heat of formation + Delta-G solvation = 27.654040 kcal Electronic energy + Delta-G solvation = -25662.838997 eV Core-core repulsion = 22132.148587 eV Total energy + Delta-G solvation = -3530.690410 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62868 -40.42017 -39.17166 -37.66801 -35.74386 -34.02263 -32.04545 -31.78054 -31.35855 -29.43294 -26.67492 -26.50993 -25.33103 -24.06759 -23.68419 -23.14882 -21.56553 -20.41391 -20.18460 -19.16555 -18.48071 -17.47971 -17.06990 -16.64615 -16.41250 -15.98029 -15.77639 -15.58867 -15.47105 -15.20844 -14.54375 -14.40863 -14.30475 -14.17301 -13.90700 -13.49959 -13.43383 -13.39399 -13.33320 -12.93551 -12.77721 -12.71554 -12.61267 -12.21363 -12.00358 -11.85532 -11.84494 -11.73778 -11.39932 -11.20532 -11.05629 -10.83940 -10.70113 -9.98609 -9.75925 -9.41253 -8.99560 -7.94859 -5.23642 0.47852 0.56147 1.47738 1.50527 1.56570 1.66929 2.12372 2.56629 2.61525 3.04298 3.36452 3.53309 3.70414 3.73746 3.79986 3.83539 3.94202 3.95546 4.09420 4.15814 4.27443 4.31481 4.32021 4.34797 4.56912 4.70232 4.73444 4.81207 4.89286 4.89490 4.93997 4.95443 4.97748 5.08014 5.12132 5.18668 5.20407 5.21705 5.27984 5.33112 5.50613 5.63266 5.66119 5.72969 5.74244 6.17784 6.26959 6.63897 7.33000 7.33695 8.09567 8.32140 9.28334 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.002623 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.105416 B =10670.270203 C =11305.880971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.069 4.069 3 C -0.046 4.046 4 C -0.116 4.116 5 C -0.130 4.130 6 C -0.137 4.137 7 C -0.131 4.131 8 C -0.133 4.133 9 C -0.136 4.136 10 C -0.178 4.178 11 H 0.152 0.848 12 C 0.540 3.460 13 O -0.569 6.569 14 N -0.695 5.695 15 C 0.138 3.862 16 H 0.082 0.918 17 C -0.173 4.173 18 C 0.156 3.844 19 H 0.085 0.915 20 N -0.728 5.728 21 C -0.245 4.245 22 H 0.079 0.921 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.973 3.027 26 H -0.274 1.274 27 H -0.298 1.298 28 H -0.280 1.280 29 C -0.141 4.141 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.413 0.587 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.373 0.627 44 H 0.251 0.749 45 H 0.087 0.913 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.183 12.452 -12.938 28.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.070 4.070 3 C -0.046 4.046 4 C -0.134 4.134 5 C -0.148 4.148 6 C -0.155 4.155 7 C -0.149 4.149 8 C -0.151 4.151 9 C -0.173 4.173 10 C -0.199 4.199 11 H 0.170 0.830 12 C 0.327 3.673 13 O -0.448 6.448 14 N -0.346 5.346 15 C 0.031 3.969 16 H 0.100 0.900 17 C -0.215 4.215 18 C 0.046 3.954 19 H 0.102 0.898 20 N -0.365 5.365 21 C -0.377 4.377 22 H 0.097 0.903 23 C -0.269 4.269 24 N -0.621 5.621 25 Si 0.802 3.198 26 H -0.200 1.200 27 H -0.224 1.224 28 H -0.206 1.206 29 C -0.181 4.181 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.120 0.880 39 H 0.156 0.844 40 H 0.250 0.750 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.206 0.794 44 H 0.060 0.940 45 H 0.105 0.895 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.162 12.953 -12.429 28.521 hybrid contribution 1.013 -0.931 0.718 1.552 sum -21.150 12.022 -11.712 27.000 Atomic orbital electron populations 1.21370 0.89011 1.03649 1.02626 1.20373 0.95999 0.87250 1.03356 1.19124 0.95140 0.93822 0.96482 1.21070 1.00652 0.93086 0.98552 1.21382 0.96453 0.97575 0.99369 1.21393 0.96714 0.99902 0.97519 1.21351 1.00202 0.93488 0.99864 1.21205 0.96064 0.97690 1.00117 1.23511 1.03267 1.00001 0.90524 1.22457 0.96183 1.04523 0.96691 0.83030 1.20182 0.84845 0.82001 0.80264 1.90701 1.84470 1.28381 1.41210 1.45591 1.10171 1.28228 1.50651 1.21410 0.83727 0.98252 0.93501 0.89980 1.24152 1.00159 0.99245 0.97977 1.21939 0.87819 0.92458 0.93224 0.89751 1.42599 1.10022 1.07774 1.76097 1.19681 0.96399 0.87373 1.34253 0.90313 1.25587 0.95904 1.02254 1.03157 1.69813 1.02076 1.36576 1.53670 0.85222 0.76173 0.80208 0.78227 1.20035 1.22395 1.20583 1.23651 0.96930 0.97232 1.00286 0.89714 0.91868 0.91434 0.85665 0.84687 0.84693 0.85036 0.85616 0.88023 0.84398 0.75022 0.91557 0.92708 0.79447 0.94036 0.89453 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.01 71.98 0.65 -0.63 16 2 C -0.07 -1.14 2.52 -52.90 -0.13 -1.27 16 3 C -0.05 -0.99 3.63 -19.87 -0.07 -1.07 16 4 C -0.12 -2.57 9.33 22.27 0.21 -2.36 16 5 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 6 C -0.14 -2.87 10.05 22.27 0.22 -2.65 16 7 C -0.13 -2.84 10.05 22.27 0.22 -2.61 16 8 C -0.13 -2.93 9.03 22.27 0.20 -2.73 16 9 C -0.14 -1.68 9.21 30.60 0.28 -1.40 16 10 C -0.18 -3.11 5.86 -11.51 -0.07 -3.18 16 11 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 12 C 0.54 14.00 6.62 87.66 0.58 14.58 16 13 O -0.57 -19.82 15.41 -3.03 -0.05 -19.87 16 14 N -0.70 -16.83 5.26 -440.06 -2.32 -19.15 16 15 C 0.14 4.12 4.32 45.52 0.20 4.32 16 16 H 0.08 2.73 7.46 -2.39 -0.02 2.71 16 17 C -0.17 -6.18 7.68 31.12 0.24 -5.94 16 18 C 0.16 5.84 4.36 45.52 0.20 6.04 16 19 H 0.08 2.98 8.10 -2.39 -0.02 2.96 16 20 N -0.73 -36.17 5.40 -320.45 -1.73 -37.90 16 21 C -0.25 -13.42 9.97 84.03 0.84 -12.58 16 22 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 23 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 24 N -0.97 -59.41 13.06 21.65 0.28 -59.12 16 25 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 27 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 28 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 29 C -0.14 -4.32 7.58 31.12 0.24 -4.09 16 30 H 0.08 0.63 7.90 -2.39 -0.02 0.61 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.78 8.06 -2.39 -0.02 0.76 16 33 H 0.13 2.43 7.62 -2.91 -0.02 2.41 16 34 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 35 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 36 H 0.13 2.34 8.06 -2.92 -0.02 2.31 16 37 H 0.13 2.40 5.96 -2.91 -0.02 2.38 16 38 H 0.10 1.32 6.11 -2.39 -0.01 1.31 16 39 H 0.14 0.92 8.05 -2.39 -0.02 0.90 16 40 H 0.41 7.86 8.70 -92.71 -0.81 7.06 16 41 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.37 20.09 7.92 -92.71 -0.73 19.35 16 44 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 45 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.08 2.72 8.12 -2.38 -0.02 2.70 16 Total: -1.00 -71.85 379.78 2.16 -69.69 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: -0.55 Total: 40.65 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 4.49 Total: -22.01 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -3.76 Total: -116.17 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.05 Total: -19.87 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -71.85 2.16 -69.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020412039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.346 kcal (2) G-P(sol) polarization free energy of solvation -71.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds