Wall clock time and date at job start Tue Mar 31 2020 10:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38255 * 119.99551 * 2 1 4 4 C 1.38214 * 119.99893 * 180.02562 * 3 2 1 5 5 C 1.38264 * 119.99881 * 359.97438 * 4 3 2 6 6 C 1.38205 * 120.00053 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00313 * 179.97438 * 6 5 4 8 8 H 1.09000 * 115.56339 * 154.31190 * 7 6 5 9 9 C 1.52999 * 117.49449 * 8.61896 * 7 6 5 10 10 C 1.53001 * 60.00218 * 252.50971 * 9 7 6 11 11 H 1.09000 * 117.49173 * 107.51052 * 10 9 7 12 12 C 1.50689 * 117.50217 * 252.51336 * 10 9 7 13 13 O 1.21280 * 120.00823 * 68.60777 * 12 10 9 14 14 N 1.34785 * 119.99993 * 248.60787 * 12 10 9 15 15 C 1.46499 * 120.00173 * 180.02562 * 14 12 10 16 16 H 1.09002 * 112.84832 * 26.91973 * 15 14 12 17 17 C 1.53785 * 113.61225 * 158.12053 * 15 14 12 18 18 C 1.53780 * 87.08211 * 89.11488 * 17 15 14 19 19 H 1.08999 * 113.61200 * 140.06325 * 18 17 15 20 20 N 1.46494 * 113.61396 * 270.88133 * 18 17 15 21 21 C 1.36936 * 120.00328 * 276.10324 * 20 18 17 22 22 H 1.08001 * 119.99628 * 0.27651 * 21 20 18 23 23 C 1.38811 * 120.00568 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00126 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 119.99451 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47119 * 90.00319 * 25 23 21 27 27 H 1.48505 * 109.46647 * 210.00183 * 25 23 21 28 28 H 1.48496 * 109.47506 * 329.99853 * 25 23 21 29 29 C 1.53780 * 113.61140 * 255.61488 * 15 14 12 30 30 C 1.38214 * 119.99928 * 180.27194 * 2 1 3 31 31 H 1.09000 * 109.47047 * 90.00815 * 1 2 3 32 32 H 1.09001 * 109.46760 * 209.99849 * 1 2 3 33 33 H 1.08993 * 109.47519 * 330.00454 * 1 2 3 34 34 H 1.08002 * 120.00392 * 359.97438 * 3 2 1 35 35 H 1.07997 * 120.00351 * 179.97438 * 4 3 2 36 36 H 1.07994 * 120.00057 * 179.97438 * 5 4 3 37 37 H 1.09004 * 117.49417 * 145.02340 * 9 7 6 38 38 H 1.08994 * 117.50251 * 0.02562 * 9 7 6 39 39 H 0.96999 * 119.99488 * 359.97438 * 14 12 10 40 40 H 1.08998 * 113.61289 * 334.56289 * 17 15 14 41 41 H 1.09005 * 113.68541 * 203.67457 * 17 15 14 42 42 H 0.96999 * 120.00148 * 96.09821 * 20 18 17 43 43 H 0.97003 * 119.99960 * 180.02562 * 24 23 21 44 44 H 1.09004 * 113.60994 * 156.33696 * 29 15 14 45 45 H 1.08995 * 113.61602 * 25.43639 * 29 15 14 46 46 H 1.07998 * 120.00204 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2718 0.0001 -0.0005 6 6 3.5808 -1.1968 0.0005 7 6 4.3343 -2.5019 0.0000 8 1 3.8025 -3.3522 0.4270 9 6 5.8498 -2.4427 0.2016 10 6 5.2738 -2.7747 -1.1765 11 1 5.3472 -2.0103 -1.9500 12 6 5.3932 -4.1983 -1.6559 13 8 4.7577 -5.0767 -1.1124 14 7 6.2063 -4.4955 -2.6890 15 6 6.3219 -5.8794 -3.1555 16 1 5.4289 -6.4706 -2.9525 17 6 6.8254 -6.0013 -4.6035 18 6 8.2495 -6.0216 -4.0235 19 1 8.9138 -6.7276 -4.5218 20 7 8.8420 -4.6900 -3.8759 21 6 9.4568 -4.0919 -4.9434 22 1 9.5008 -4.6001 -5.8954 23 6 10.0187 -2.8304 -4.8034 24 7 10.6091 -2.2554 -5.8296 25 14 9.9357 -1.9482 -3.1589 26 1 11.1301 -2.2978 -2.3488 27 1 9.9033 -0.4809 -3.3854 28 1 8.7076 -2.3645 -2.4352 29 6 7.6289 -6.5669 -2.7264 30 6 2.1981 -1.1970 -0.0057 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5137 34 1 1.6582 2.1327 -0.0004 35 1 4.1204 2.1327 -0.0010 36 1 5.3517 0.0001 -0.0014 37 1 6.3151 -3.2541 0.7613 38 1 6.3017 -1.4599 0.3350 39 1 6.7143 -3.7930 -3.1240 40 1 6.6151 -5.1233 -5.2142 41 1 6.5386 -6.9337 -5.0898 42 1 8.7989 -4.2318 -3.0220 43 1 11.0022 -1.3740 -5.7317 44 1 7.5612 -7.6545 -2.6984 45 1 8.0673 -6.1456 -1.8219 46 1 1.6581 -2.1323 -0.0105 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022842036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:11 Heat of formation + Delta-G solvation = 44.126198 kcal Electronic energy + Delta-G solvation = -25605.211716 eV Core-core repulsion = 22075.235592 eV Total energy + Delta-G solvation = -3529.976124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.41326 -39.60547 -38.32908 -36.36431 -33.74550 -32.75415 -32.56383 -30.99679 -30.50109 -27.12458 -25.56100 -25.22205 -24.04946 -23.60641 -22.33177 -21.88613 -20.18070 -19.68265 -18.92069 -17.71659 -17.44365 -16.74086 -15.88221 -15.40384 -15.22528 -14.90769 -14.77038 -14.49391 -14.22087 -14.00486 -13.80109 -13.75618 -13.32238 -12.85062 -12.66399 -12.47295 -12.39468 -12.18840 -12.10152 -11.97740 -11.73024 -11.46223 -11.10776 -11.06659 -10.97362 -10.73189 -10.54855 -10.45965 -10.29497 -9.75700 -9.68369 -9.65950 -9.01213 -8.91275 -8.70479 -8.65161 -7.38893 -5.87869 -3.25192 1.11734 1.21989 2.62287 3.21254 3.25713 3.30267 3.36176 3.52920 3.95453 4.39188 4.46488 4.59165 4.70035 4.71926 4.80584 4.92966 4.94258 4.99094 5.09126 5.12208 5.17021 5.24446 5.27643 5.34569 5.34857 5.49229 5.56203 5.60662 5.62390 5.72044 5.84253 5.85737 5.94005 5.98274 6.02844 6.17440 6.21001 6.31380 6.40299 6.44978 6.48808 6.57108 6.72430 6.83840 6.95417 7.82329 7.90076 8.31798 8.44195 9.08643 9.80382 9.99664 11.30112 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013412 B = 0.003579 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.203689 B = 7821.625192 C = 9166.020908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.113 4.113 5 C -0.125 4.125 6 C -0.046 4.046 7 C -0.084 4.084 8 H 0.127 0.873 9 C -0.144 4.144 10 C -0.177 4.177 11 H 0.125 0.875 12 C 0.544 3.456 13 O -0.551 6.551 14 N -0.698 5.698 15 C 0.124 3.876 16 H 0.091 0.909 17 C -0.176 4.176 18 C 0.167 3.833 19 H 0.060 0.940 20 N -0.734 5.734 21 C -0.247 4.247 22 H 0.093 0.907 23 C 0.007 3.993 24 N -0.929 5.929 25 Si 0.880 3.120 26 H -0.283 1.283 27 H -0.289 1.289 28 H -0.277 1.277 29 C -0.164 4.164 30 C -0.110 4.110 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.411 0.589 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.361 0.639 43 H 0.261 0.739 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.604 2.753 12.639 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.131 4.131 5 C -0.143 4.143 6 C -0.046 4.046 7 C -0.102 4.102 8 H 0.145 0.855 9 C -0.182 4.182 10 C -0.198 4.198 11 H 0.143 0.857 12 C 0.330 3.670 13 O -0.430 6.430 14 N -0.350 5.350 15 C 0.019 3.981 16 H 0.109 0.891 17 C -0.217 4.217 18 C 0.057 3.943 19 H 0.078 0.922 20 N -0.378 5.378 21 C -0.376 4.376 22 H 0.111 0.889 23 C -0.189 4.189 24 N -0.576 5.576 25 Si 0.710 3.290 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.203 1.203 29 C -0.203 4.203 30 C -0.128 4.128 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.249 0.751 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.195 0.805 43 H 0.071 0.929 44 H 0.109 0.891 45 H 0.085 0.915 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.922 2.195 12.765 21.309 hybrid contribution 0.412 1.174 0.729 1.442 sum -16.509 3.370 13.494 21.587 Atomic orbital electron populations 1.20791 0.91190 1.02696 1.02396 1.19900 0.96063 0.93063 0.99610 1.21025 0.94291 0.97439 1.01663 1.21114 0.94287 0.97918 0.99747 1.21104 1.00213 0.91962 1.01011 1.19123 0.93301 0.92949 0.99215 1.21062 0.91847 0.96730 1.00580 0.85532 1.23129 0.95268 1.03797 0.95976 1.22369 1.07317 0.96331 0.93814 0.85702 1.19552 0.78746 0.88953 0.79717 1.90644 1.46176 1.48985 1.57177 1.45871 1.45115 1.10353 1.33649 1.21780 0.97822 0.82462 0.96048 0.89082 1.24002 1.00413 1.02396 0.94851 1.21150 0.91722 0.87837 0.93609 0.92212 1.42605 1.67824 1.15913 1.11413 1.19049 1.28212 0.99108 0.91266 0.88920 1.24680 1.00201 0.97240 0.96763 1.69687 1.42194 1.16465 1.29282 0.86640 0.77932 0.79586 0.84814 1.20978 1.21579 1.20343 1.23735 0.97087 1.00357 0.99150 1.20872 0.93299 0.97762 1.00899 0.91132 0.91505 0.91611 0.86220 0.85972 0.85797 0.87646 0.87405 0.75056 0.90336 0.89699 0.80504 0.92911 0.89070 0.91534 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.09 -0.86 5.88 -104.62 -0.62 -1.47 16 3 C -0.13 -1.22 9.70 -39.58 -0.38 -1.60 16 4 C -0.11 -1.13 10.05 -39.58 -0.40 -1.53 16 5 C -0.13 -1.39 9.30 -39.58 -0.37 -1.76 16 6 C -0.05 -0.54 5.61 -104.62 -0.59 -1.13 16 7 C -0.08 -1.04 5.56 -91.77 -0.51 -1.55 16 8 H 0.13 1.65 7.67 -51.93 -0.40 1.25 16 9 C -0.14 -1.75 9.56 -26.73 -0.26 -2.00 16 10 C -0.18 -2.47 5.82 -91.77 -0.53 -3.00 16 11 H 0.13 1.68 8.14 -51.93 -0.42 1.26 16 12 C 0.54 8.98 7.61 -10.99 -0.08 8.89 16 13 O -0.55 -10.28 15.90 5.56 0.09 -10.19 16 14 N -0.70 -11.68 4.97 -53.02 -0.26 -11.95 16 15 C 0.12 1.99 4.28 -67.12 -0.29 1.70 16 16 H 0.09 1.44 7.54 -51.93 -0.39 1.05 16 17 C -0.18 -2.85 7.61 -25.92 -0.20 -3.04 16 18 C 0.17 3.05 4.53 -67.12 -0.30 2.74 16 19 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 20 N -0.73 -16.17 4.15 -52.64 -0.22 -16.38 16 21 C -0.25 -6.55 10.47 -15.06 -0.16 -6.71 16 22 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 23 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 24 N -0.93 -28.06 13.97 55.49 0.78 -27.29 16 25 Si 0.88 20.74 27.74 -169.99 -4.71 16.03 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -5.88 6.52 56.52 0.37 -5.51 16 29 C -0.16 -2.56 7.57 -25.92 -0.20 -2.75 16 30 C -0.11 -1.22 9.39 -39.58 -0.37 -1.59 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.26 6.02 -52.49 -0.32 0.94 16 37 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.11 1.14 6.18 -51.93 -0.32 0.82 16 39 H 0.41 7.30 7.22 -40.82 -0.29 7.01 16 40 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.36 7.84 4.95 -40.82 -0.20 7.64 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 46 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -31.05 377.35 -10.64 -41.68 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -7.00 Total: 17.58 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -4.99 Total: -15.17 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.29 Total: -55.62 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.71 Total: 16.03 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.05 -10.64 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022842036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.811 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds