Wall clock time and date at job start Tue Mar 31 2020 10:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38255 * 119.99551 * 2 1 4 4 C 1.38214 * 119.99893 * 180.02562 * 3 2 1 5 5 C 1.38264 * 119.99881 * 359.97438 * 4 3 2 6 6 C 1.38205 * 120.00053 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00313 * 179.97438 * 6 5 4 8 8 H 1.09000 * 115.56339 * 154.31190 * 7 6 5 9 9 C 1.52999 * 117.49449 * 8.61896 * 7 6 5 10 10 C 1.53001 * 60.00218 * 252.50971 * 9 7 6 11 11 H 1.09000 * 117.49173 * 107.51052 * 10 9 7 12 12 C 1.50689 * 117.50217 * 252.51336 * 10 9 7 13 13 O 1.21280 * 120.00823 * 68.60777 * 12 10 9 14 14 N 1.34785 * 119.99993 * 248.60787 * 12 10 9 15 15 C 1.46499 * 120.00173 * 180.02562 * 14 12 10 16 16 H 1.09002 * 112.84832 * 26.91973 * 15 14 12 17 17 C 1.53785 * 113.61225 * 158.12053 * 15 14 12 18 18 C 1.53780 * 87.08211 * 89.11488 * 17 15 14 19 19 H 1.08999 * 113.61200 * 140.06325 * 18 17 15 20 20 N 1.46494 * 113.61396 * 270.88133 * 18 17 15 21 21 C 1.36936 * 120.00328 * 276.10324 * 20 18 17 22 22 H 1.08001 * 119.99628 * 0.27651 * 21 20 18 23 23 C 1.38811 * 120.00568 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00126 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 119.99451 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47119 * 90.00319 * 25 23 21 27 27 H 1.48505 * 109.46647 * 210.00183 * 25 23 21 28 28 H 1.48496 * 109.47506 * 329.99853 * 25 23 21 29 29 C 1.53780 * 113.61140 * 255.61488 * 15 14 12 30 30 C 1.38214 * 119.99928 * 180.27194 * 2 1 3 31 31 H 1.09000 * 109.47047 * 90.00815 * 1 2 3 32 32 H 1.09001 * 109.46760 * 209.99849 * 1 2 3 33 33 H 1.08993 * 109.47519 * 330.00454 * 1 2 3 34 34 H 1.08002 * 120.00392 * 359.97438 * 3 2 1 35 35 H 1.07997 * 120.00351 * 179.97438 * 4 3 2 36 36 H 1.07994 * 120.00057 * 179.97438 * 5 4 3 37 37 H 1.09004 * 117.49417 * 145.02340 * 9 7 6 38 38 H 1.08994 * 117.50251 * 0.02562 * 9 7 6 39 39 H 0.96999 * 119.99488 * 359.97438 * 14 12 10 40 40 H 1.08998 * 113.61289 * 334.56289 * 17 15 14 41 41 H 1.09005 * 113.68541 * 203.67457 * 17 15 14 42 42 H 0.96999 * 120.00148 * 96.09821 * 20 18 17 43 43 H 0.97003 * 119.99960 * 180.02562 * 24 23 21 44 44 H 1.09004 * 113.60994 * 156.33696 * 29 15 14 45 45 H 1.08995 * 113.61602 * 25.43639 * 29 15 14 46 46 H 1.07998 * 120.00204 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2718 0.0001 -0.0005 6 6 3.5808 -1.1968 0.0005 7 6 4.3343 -2.5019 0.0000 8 1 3.8025 -3.3522 0.4270 9 6 5.8498 -2.4427 0.2016 10 6 5.2738 -2.7747 -1.1765 11 1 5.3472 -2.0103 -1.9500 12 6 5.3932 -4.1983 -1.6559 13 8 4.7577 -5.0767 -1.1124 14 7 6.2063 -4.4955 -2.6890 15 6 6.3219 -5.8794 -3.1555 16 1 5.4289 -6.4706 -2.9525 17 6 6.8254 -6.0013 -4.6035 18 6 8.2495 -6.0216 -4.0235 19 1 8.9138 -6.7276 -4.5218 20 7 8.8420 -4.6900 -3.8759 21 6 9.4568 -4.0919 -4.9434 22 1 9.5008 -4.6001 -5.8954 23 6 10.0187 -2.8304 -4.8034 24 7 10.6091 -2.2554 -5.8296 25 14 9.9357 -1.9482 -3.1589 26 1 11.1301 -2.2978 -2.3488 27 1 9.9033 -0.4809 -3.3854 28 1 8.7076 -2.3645 -2.4352 29 6 7.6289 -6.5669 -2.7264 30 6 2.1981 -1.1970 -0.0057 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5137 34 1 1.6582 2.1327 -0.0004 35 1 4.1204 2.1327 -0.0010 36 1 5.3517 0.0001 -0.0014 37 1 6.3151 -3.2541 0.7613 38 1 6.3017 -1.4599 0.3350 39 1 6.7143 -3.7930 -3.1240 40 1 6.6151 -5.1233 -5.2142 41 1 6.5386 -6.9337 -5.0898 42 1 8.7989 -4.2318 -3.0220 43 1 11.0022 -1.3740 -5.7317 44 1 7.5612 -7.6545 -2.6984 45 1 8.0673 -6.1456 -1.8219 46 1 1.6581 -2.1323 -0.0105 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022842036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:10 Heat of formation + Delta-G solvation = 27.259392 kcal Electronic energy + Delta-G solvation = -25605.943115 eV Core-core repulsion = 22075.235592 eV Total energy + Delta-G solvation = -3530.707524 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.56913 -40.61375 -39.55520 -37.41941 -35.54158 -34.13665 -33.40779 -32.46499 -31.75658 -27.80372 -26.94642 -26.51170 -25.59298 -24.56509 -23.52363 -22.96055 -21.35790 -20.74108 -20.32091 -19.50171 -18.64606 -17.61920 -17.15469 -16.60362 -16.36741 -16.17272 -16.03657 -15.89994 -15.49100 -15.14007 -14.81173 -14.75706 -14.63962 -14.07128 -13.91958 -13.61122 -13.39535 -13.28436 -13.20782 -13.02236 -12.87761 -12.85110 -12.57160 -12.26309 -12.05490 -11.92557 -11.89836 -11.80085 -11.64386 -11.48780 -11.14922 -10.98376 -10.86820 -10.04499 -9.68832 -9.45804 -9.30165 -8.01578 -5.36516 0.32292 0.45125 1.35056 1.40542 1.41516 1.48025 2.09492 2.47820 2.61014 3.02318 3.28192 3.42045 3.53151 3.63599 3.70896 3.74580 3.86243 3.92717 4.02061 4.05264 4.14122 4.15932 4.21259 4.31821 4.49056 4.50645 4.66390 4.78941 4.81993 4.83185 4.86310 4.87764 4.93492 4.98301 5.01663 5.02435 5.14306 5.20309 5.29416 5.32382 5.55447 5.60286 5.65663 5.68628 5.82289 6.09679 6.22650 6.50241 7.07190 7.14476 7.82436 8.01302 9.19653 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013412 B = 0.003579 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.203689 B = 7821.625192 C = 9166.020908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.119 4.119 5 C -0.137 4.137 6 C -0.061 4.061 7 C -0.074 4.074 8 H 0.116 0.884 9 C -0.135 4.135 10 C -0.192 4.192 11 H 0.128 0.872 12 C 0.543 3.457 13 O -0.576 6.576 14 N -0.702 5.702 15 C 0.123 3.877 16 H 0.097 0.903 17 C -0.163 4.163 18 C 0.147 3.853 19 H 0.057 0.943 20 N -0.735 5.735 21 C -0.227 4.227 22 H 0.059 0.941 23 C -0.061 4.061 24 N -0.982 5.982 25 Si 0.947 3.053 26 H -0.286 1.286 27 H -0.296 1.296 28 H -0.242 1.242 29 C -0.146 4.146 30 C -0.127 4.127 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.126 0.874 39 H 0.406 0.594 40 H 0.055 0.945 41 H 0.115 0.885 42 H 0.365 0.635 43 H 0.257 0.743 44 H 0.123 0.877 45 H 0.060 0.940 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.067 3.064 14.649 23.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.137 4.137 5 C -0.155 4.155 6 C -0.061 4.061 7 C -0.093 4.093 8 H 0.134 0.866 9 C -0.172 4.172 10 C -0.213 4.213 11 H 0.146 0.854 12 C 0.331 3.669 13 O -0.457 6.457 14 N -0.353 5.353 15 C 0.018 3.982 16 H 0.115 0.885 17 C -0.204 4.204 18 C 0.038 3.962 19 H 0.075 0.925 20 N -0.379 5.379 21 C -0.358 4.358 22 H 0.077 0.923 23 C -0.252 4.252 24 N -0.632 5.632 25 Si 0.774 3.226 26 H -0.212 1.212 27 H -0.223 1.223 28 H -0.166 1.166 29 C -0.185 4.185 30 C -0.145 4.145 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.124 0.876 38 H 0.144 0.856 39 H 0.243 0.757 40 H 0.074 0.926 41 H 0.133 0.867 42 H 0.199 0.801 43 H 0.066 0.934 44 H 0.141 0.859 45 H 0.079 0.921 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.427 2.452 14.797 23.760 hybrid contribution 0.818 0.984 0.026 1.280 sum -17.609 3.436 14.824 23.273 Atomic orbital electron populations 1.20838 0.89469 1.03689 1.02981 1.20230 0.97475 0.92789 0.98811 1.21367 0.94430 0.98284 1.00766 1.21417 0.94764 0.98378 0.99134 1.21270 1.00748 0.92109 1.01363 1.19159 0.93642 0.92821 1.00449 1.20978 0.92131 0.96866 0.99280 0.86559 1.23263 0.95129 1.04693 0.94071 1.22365 1.09510 0.94736 0.94734 0.85364 1.19934 0.77974 0.89781 0.79183 1.90625 1.47077 1.50015 1.57934 1.45951 1.45086 1.10487 1.33739 1.21848 0.98341 0.82430 0.95621 0.88472 1.23924 0.98529 1.02925 0.94983 1.21429 0.92457 0.86101 0.96165 0.92470 1.42518 1.67863 1.17237 1.10232 1.18955 1.26938 0.98736 0.91182 0.92329 1.25460 1.00695 0.98387 1.00679 1.69876 1.44384 1.16927 1.32052 0.85540 0.79151 0.77608 0.80280 1.21217 1.22250 1.16573 1.23698 0.95616 1.02102 0.97058 1.21051 0.93369 0.98530 1.01543 0.90643 0.91066 0.90135 0.84012 0.84091 0.85074 0.87597 0.85556 0.75661 0.92625 0.86721 0.80084 0.93380 0.85893 0.92129 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 71.24 0.71 -0.72 16 2 C -0.09 -1.69 5.88 -19.86 -0.12 -1.81 16 3 C -0.13 -2.22 9.70 22.27 0.22 -2.00 16 4 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 5 C -0.14 -2.81 9.30 22.27 0.21 -2.60 16 6 C -0.06 -1.36 5.61 -19.87 -0.11 -1.47 16 7 C -0.07 -1.76 5.56 -11.54 -0.06 -1.83 16 8 H 0.12 2.99 7.67 -2.39 -0.02 2.97 16 9 C -0.13 -3.00 9.56 30.59 0.29 -2.70 16 10 C -0.19 -5.10 5.82 -11.54 -0.07 -5.17 16 11 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 12 C 0.54 17.27 7.61 87.65 0.67 17.94 16 13 O -0.58 -20.90 15.90 -3.03 -0.05 -20.95 16 14 N -0.70 -22.49 4.97 -440.03 -2.19 -24.67 16 15 C 0.12 3.68 4.28 45.52 0.19 3.88 16 16 H 0.10 2.85 7.54 -2.39 -0.02 2.84 16 17 C -0.16 -5.03 7.61 31.12 0.24 -4.79 16 18 C 0.15 5.16 4.53 45.52 0.21 5.36 16 19 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 20 N -0.73 -31.73 4.15 -320.46 -1.33 -33.06 16 21 C -0.23 -12.23 10.47 84.03 0.88 -11.35 16 22 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 23 C -0.06 -3.41 5.50 84.86 0.47 -2.95 16 24 N -0.98 -61.03 13.97 21.65 0.30 -60.73 16 25 Si 0.95 42.70 27.74 68.60 1.90 44.60 16 26 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 28 H -0.24 -9.31 6.52 99.48 0.65 -8.67 16 29 C -0.15 -4.16 7.57 31.12 0.24 -3.92 16 30 C -0.13 -2.70 9.39 22.27 0.21 -2.49 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 33 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 34 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.13 2.38 6.02 -2.91 -0.02 2.36 16 37 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.13 2.32 6.18 -2.39 -0.01 2.31 16 39 H 0.41 13.88 7.22 -92.71 -0.67 13.21 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 42 H 0.36 15.18 4.95 -92.71 -0.46 14.72 16 43 H 0.26 15.30 8.31 -92.71 -0.77 14.52 16 44 H 0.12 2.75 8.14 -2.38 -0.02 2.73 16 45 H 0.06 1.84 8.13 -2.39 -0.02 1.82 16 46 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -68.14 377.35 2.84 -65.30 By element: Atomic # 1 Polarization: 48.22 SS G_CDS: -0.19 Total: 48.03 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 4.39 Total: -18.53 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -3.22 Total: -118.46 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.05 Total: -20.95 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.90 Total: 44.60 kcal Total: -68.14 2.84 -65.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022842036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.564 kcal (2) G-P(sol) polarization free energy of solvation -68.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds