Wall clock time and date at job start Tue Mar 31 2020 11:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32675 * 1 3 3 C 1.47670 * 120.00268 * 2 1 4 4 C 1.39710 * 119.99854 * 179.97438 * 3 2 1 5 5 C 1.37600 * 120.00405 * 180.02562 * 4 3 2 6 6 C 1.39743 * 119.99566 * 359.97438 * 5 4 3 7 7 C 1.47688 * 120.00526 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99635 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00261 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00077 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.46920 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.49856 * 304.99826 * 11 10 9 13 13 C 1.53046 * 109.49434 * 184.93455 * 11 10 9 14 14 C 1.53042 * 109.53729 * 178.65057 * 13 11 10 15 15 C 1.53196 * 109.31154 * 61.36381 * 14 13 11 16 16 N 1.46923 * 108.77605 * 305.36727 * 15 14 13 17 17 C 1.36939 * 120.63127 * 233.58540 * 16 15 14 18 18 H 1.07998 * 120.00046 * 151.84394 * 17 16 15 19 19 C 1.38814 * 119.99738 * 331.84699 * 17 16 15 20 20 N 1.31616 * 120.00249 * 343.07491 * 19 17 16 21 21 Si 1.86802 * 119.99751 * 163.07844 * 19 17 16 22 22 H 1.48494 * 109.47526 * 59.99990 * 21 19 17 23 23 H 1.48503 * 109.47021 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47420 * 299.99464 * 21 19 17 25 25 C 1.46924 * 118.74340 * 53.60609 * 16 15 14 26 26 C 1.39743 * 119.99474 * 0.24680 * 6 5 4 27 27 C 1.37606 * 119.99199 * 359.52195 * 26 6 5 28 28 H 1.07997 * 120.00378 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99877 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00339 * 179.97438 * 2 1 3 31 31 H 1.07997 * 119.99613 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.00542 * 179.97438 * 5 4 3 33 33 H 0.96996 * 120.00258 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47061 * 59.99940 * 10 9 7 35 35 H 1.09004 * 109.47191 * 299.99660 * 10 9 7 36 36 H 1.08998 * 109.45942 * 298.66943 * 13 11 10 37 37 H 1.09001 * 109.46023 * 58.64469 * 13 11 10 38 38 H 1.08999 * 109.49984 * 181.31504 * 14 13 11 39 39 H 1.08999 * 109.49672 * 301.38174 * 14 13 11 40 40 H 1.09006 * 109.58571 * 65.15351 * 15 14 13 41 41 H 1.08995 * 109.58752 * 185.43290 * 15 14 13 42 42 H 0.97000 * 120.00254 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.58947 * 186.60150 * 25 16 15 44 44 H 1.09004 * 109.58522 * 66.18043 * 25 16 15 45 45 H 1.08001 * 120.00456 * 179.72262 * 26 6 5 46 46 H 1.08005 * 119.99738 * 180.23096 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3267 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 3.4623 1.2787 0.0005 5 6 4.1504 2.4703 0.0011 6 6 3.4518 3.6805 0.0005 7 6 4.1902 4.9596 0.0017 8 8 5.4060 4.9595 0.0036 9 7 3.5164 6.1267 0.0006 10 6 4.2489 7.3955 0.0023 11 6 3.2546 8.5584 0.0000 12 1 2.5723 8.4520 -0.8432 13 6 4.0155 9.8807 -0.1223 14 6 3.0200 11.0425 -0.1586 15 6 2.2192 11.0645 1.1472 16 7 1.6012 9.7463 1.3452 17 6 0.2538 9.6328 1.5611 18 1 -0.2670 8.7347 1.2635 19 6 -0.4427 10.6721 2.1625 20 7 0.2091 11.6075 2.8200 21 14 -2.3053 10.7429 2.0387 22 1 -2.8888 9.5206 2.6473 23 1 -2.8041 11.9411 2.7604 24 1 -2.7038 10.8233 0.6104 25 6 2.4565 8.5522 1.3076 26 6 2.0544 3.6805 0.0047 27 6 1.3665 2.4887 -0.0007 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8668 -0.9353 0.0004 31 1 4.0021 0.3434 0.0005 32 1 5.2304 2.4702 0.0019 33 1 2.5464 6.1268 -0.0012 34 1 4.8773 7.4534 -0.8864 35 1 4.8738 7.4531 0.8936 36 1 4.6796 9.9981 0.7340 37 1 4.6035 9.8777 -1.0401 38 1 3.5613 11.9821 -0.2692 39 1 2.3402 10.9130 -1.0007 40 1 2.8859 11.2845 1.9811 41 1 1.4442 11.8285 1.0877 42 1 -0.2775 12.3339 3.2400 43 1 1.8363 7.6570 1.3530 44 1 3.1425 8.5673 2.1545 45 1 1.5143 4.6158 0.0088 46 1 0.2865 2.4886 -0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023608692.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:00 Heat of formation + Delta-G solvation = 18.159699 kcal Electronic energy + Delta-G solvation = -25378.683577 eV Core-core repulsion = 21847.581461 eV Total energy + Delta-G solvation = -3531.102116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.28692 -38.76971 -37.71879 -34.87842 -34.45890 -33.05362 -31.42900 -30.52929 -30.44549 -29.56101 -25.82689 -25.29446 -23.94389 -22.92077 -22.13421 -21.13950 -20.69925 -19.85309 -19.13943 -18.03428 -16.69436 -16.59813 -15.74897 -15.31609 -15.10217 -15.03506 -14.81255 -14.25305 -14.18534 -13.76373 -13.55302 -13.45909 -13.36424 -13.06982 -12.80179 -12.50539 -12.34172 -12.21972 -12.17727 -11.59792 -11.32512 -11.14300 -11.02998 -10.72856 -10.65410 -10.52792 -10.26971 -10.20094 -10.02011 -9.90311 -9.58010 -9.44711 -9.25510 -8.98255 -8.50247 -8.48232 -6.69889 -5.81729 -3.25073 0.33025 1.16350 1.98121 2.98528 3.23512 3.35140 3.41603 3.41997 3.78293 4.36788 4.44794 4.45960 4.64400 4.75326 4.89660 5.06092 5.10389 5.16534 5.28065 5.39926 5.42018 5.44696 5.55050 5.60608 5.75052 5.81685 5.90176 5.95171 5.98004 6.01065 6.13894 6.21561 6.24110 6.30975 6.35723 6.43065 6.48065 6.57044 6.63679 6.68740 6.75439 6.84140 6.94267 7.37701 7.56475 7.65125 7.75217 8.24123 8.41693 9.17905 9.81342 10.38462 11.26525 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.003212 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.411054 B = 8714.763700 C =10734.900908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.124 4.124 3 C -0.038 4.038 4 C -0.120 4.120 5 C -0.059 4.059 6 C -0.132 4.132 7 C 0.555 3.445 8 O -0.544 6.544 9 N -0.718 5.718 10 C 0.127 3.873 11 C -0.118 4.118 12 H 0.073 0.927 13 C -0.099 4.099 14 C -0.142 4.142 15 C 0.169 3.831 16 N -0.591 5.591 17 C -0.256 4.256 18 H 0.064 0.936 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.154 3.846 26 C -0.081 4.081 27 C -0.122 4.122 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.402 0.598 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.017 0.983 41 H 0.086 0.914 42 H 0.255 0.745 43 H 0.049 0.951 44 H 0.019 0.981 45 H 0.131 0.869 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.994 -18.165 -7.360 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.039 4.039 4 C -0.138 4.138 5 C -0.078 4.078 6 C -0.135 4.135 7 C 0.342 3.658 8 O -0.423 6.423 9 N -0.369 5.369 10 C 0.003 3.997 11 C -0.139 4.139 12 H 0.091 0.909 13 C -0.138 4.138 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.313 5.313 17 C -0.386 4.386 18 H 0.082 0.918 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.027 3.973 26 C -0.100 4.100 27 C -0.140 4.140 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.155 0.845 33 H 0.238 0.762 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.037 0.963 45 H 0.149 0.851 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.777 -17.963 -7.240 19.948 hybrid contribution -1.475 0.129 0.025 1.481 sum 3.302 -17.834 -7.216 19.520 Atomic orbital electron populations 1.24492 0.95700 1.02573 0.98023 1.21831 0.95278 0.95716 1.01400 1.19321 0.93424 0.93260 0.97862 1.21219 0.93154 0.98152 1.01246 1.21201 1.00826 0.90723 0.95086 1.20075 0.93683 0.93826 1.05920 1.18235 0.87215 0.83796 0.76567 1.90759 1.13429 1.87738 1.50412 1.46012 1.10775 1.05801 1.74306 1.21501 0.94684 0.81567 1.01920 1.21965 0.96932 0.93228 1.01765 0.90862 1.21341 0.97555 0.94418 1.00453 1.22173 0.97942 0.96193 1.01782 1.20792 0.95415 0.88713 0.90740 1.44019 1.03933 1.00417 1.82962 1.19110 0.83000 1.03228 1.33228 0.91822 1.25045 0.98012 0.99274 0.97164 1.70024 1.34577 1.14729 1.35197 0.86382 0.85604 0.77144 0.77697 1.20886 1.21609 1.21012 1.20894 0.92738 0.91103 0.92536 1.21314 0.93046 0.98727 0.96875 1.21249 1.00273 0.91432 1.01043 0.87594 0.87754 0.86214 0.85223 0.84511 0.76170 0.91803 0.91394 0.92431 0.93403 0.93162 0.92760 0.96440 0.89585 0.93535 0.93265 0.96303 0.85136 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 14.15 28.84 0.41 -0.70 16 2 C -0.12 -0.92 9.90 -37.62 -0.37 -1.30 16 3 C -0.04 -0.36 5.87 -104.95 -0.62 -0.98 16 4 C -0.12 -1.13 9.76 -39.26 -0.38 -1.51 16 5 C -0.06 -0.67 9.58 -39.25 -0.38 -1.05 16 6 C -0.13 -1.65 5.88 -104.91 -0.62 -2.26 16 7 C 0.55 8.21 7.77 -12.40 -0.10 8.11 16 8 O -0.54 -9.71 16.33 5.29 0.09 -9.62 16 9 N -0.72 -9.89 5.28 -61.29 -0.32 -10.22 16 10 C 0.13 1.87 5.07 -4.04 -0.02 1.85 16 11 C -0.12 -1.92 2.37 -90.50 -0.21 -2.14 16 12 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 13 C -0.10 -1.62 5.17 -26.69 -0.14 -1.76 16 14 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 15 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16 16 N -0.59 -14.35 2.99 -172.32 -0.52 -14.86 16 17 C -0.26 -6.82 9.58 -15.06 -0.14 -6.97 16 18 H 0.06 1.64 7.88 -52.49 -0.41 1.23 16 19 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 20 N -0.90 -25.83 11.19 55.49 0.62 -25.21 16 21 Si 0.90 21.21 29.59 -169.99 -5.03 16.19 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.15 3.07 5.60 -3.71 -0.02 3.05 16 26 C -0.08 -0.87 9.52 -39.25 -0.37 -1.24 16 27 C -0.12 -1.18 9.38 -39.26 -0.37 -1.55 16 28 H 0.11 0.51 8.06 -52.49 -0.42 0.09 16 29 H 0.10 0.65 6.02 -52.48 -0.32 0.33 16 30 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.14 1.53 7.64 -52.49 -0.40 1.13 16 33 H 0.40 4.96 5.72 -40.82 -0.23 4.72 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 2.26 6.07 -51.93 -0.31 1.95 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.05 0.93 7.14 -51.93 -0.37 0.56 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.13 1.23 6.38 -52.49 -0.34 0.90 16 46 H 0.13 1.02 6.15 -52.48 -0.32 0.70 16 LS Contribution 371.37 15.07 5.60 5.60 Total: -1.00 -31.38 371.37 -10.08 -41.46 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.92 Total: 3.96 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -3.60 Total: -7.29 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.22 Total: -50.29 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.38 -10.08 -41.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023608692.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.619 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds