Wall clock time and date at job start Tue Mar 31 2020 11:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32675 * 1 3 3 C 1.47670 * 120.00268 * 2 1 4 4 C 1.39710 * 119.99854 * 179.97438 * 3 2 1 5 5 C 1.37600 * 120.00405 * 180.02562 * 4 3 2 6 6 C 1.39743 * 119.99566 * 359.97438 * 5 4 3 7 7 C 1.47688 * 120.00526 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99635 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00261 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00077 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.46920 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.49856 * 304.99826 * 11 10 9 13 13 C 1.53046 * 109.49434 * 184.93455 * 11 10 9 14 14 C 1.53042 * 109.53729 * 178.65057 * 13 11 10 15 15 C 1.53196 * 109.31154 * 61.36381 * 14 13 11 16 16 N 1.46923 * 108.77605 * 305.36727 * 15 14 13 17 17 C 1.36939 * 120.63127 * 233.58540 * 16 15 14 18 18 H 1.07998 * 120.00046 * 151.84394 * 17 16 15 19 19 C 1.38814 * 119.99738 * 331.84699 * 17 16 15 20 20 N 1.31616 * 120.00249 * 343.07491 * 19 17 16 21 21 Si 1.86802 * 119.99751 * 163.07844 * 19 17 16 22 22 H 1.48494 * 109.47526 * 59.99990 * 21 19 17 23 23 H 1.48503 * 109.47021 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47420 * 299.99464 * 21 19 17 25 25 C 1.46924 * 118.74340 * 53.60609 * 16 15 14 26 26 C 1.39743 * 119.99474 * 0.24680 * 6 5 4 27 27 C 1.37606 * 119.99199 * 359.52195 * 26 6 5 28 28 H 1.07997 * 120.00378 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99877 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00339 * 179.97438 * 2 1 3 31 31 H 1.07997 * 119.99613 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.00542 * 179.97438 * 5 4 3 33 33 H 0.96996 * 120.00258 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47061 * 59.99940 * 10 9 7 35 35 H 1.09004 * 109.47191 * 299.99660 * 10 9 7 36 36 H 1.08998 * 109.45942 * 298.66943 * 13 11 10 37 37 H 1.09001 * 109.46023 * 58.64469 * 13 11 10 38 38 H 1.08999 * 109.49984 * 181.31504 * 14 13 11 39 39 H 1.08999 * 109.49672 * 301.38174 * 14 13 11 40 40 H 1.09006 * 109.58571 * 65.15351 * 15 14 13 41 41 H 1.08995 * 109.58752 * 185.43290 * 15 14 13 42 42 H 0.97000 * 120.00254 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.58947 * 186.60150 * 25 16 15 44 44 H 1.09004 * 109.58522 * 66.18043 * 25 16 15 45 45 H 1.08001 * 120.00456 * 179.72262 * 26 6 5 46 46 H 1.08005 * 119.99738 * 180.23096 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3267 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 3.4623 1.2787 0.0005 5 6 4.1504 2.4703 0.0011 6 6 3.4518 3.6805 0.0005 7 6 4.1902 4.9596 0.0017 8 8 5.4060 4.9595 0.0036 9 7 3.5164 6.1267 0.0006 10 6 4.2489 7.3955 0.0023 11 6 3.2546 8.5584 0.0000 12 1 2.5723 8.4520 -0.8432 13 6 4.0155 9.8807 -0.1223 14 6 3.0200 11.0425 -0.1586 15 6 2.2192 11.0645 1.1472 16 7 1.6012 9.7463 1.3452 17 6 0.2538 9.6328 1.5611 18 1 -0.2670 8.7347 1.2635 19 6 -0.4427 10.6721 2.1625 20 7 0.2091 11.6075 2.8200 21 14 -2.3053 10.7429 2.0387 22 1 -2.8888 9.5206 2.6473 23 1 -2.8041 11.9411 2.7604 24 1 -2.7038 10.8233 0.6104 25 6 2.4565 8.5522 1.3076 26 6 2.0544 3.6805 0.0047 27 6 1.3665 2.4887 -0.0007 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8668 -0.9353 0.0004 31 1 4.0021 0.3434 0.0005 32 1 5.2304 2.4702 0.0019 33 1 2.5464 6.1268 -0.0012 34 1 4.8773 7.4534 -0.8864 35 1 4.8738 7.4531 0.8936 36 1 4.6796 9.9981 0.7340 37 1 4.6035 9.8777 -1.0401 38 1 3.5613 11.9821 -0.2692 39 1 2.3402 10.9130 -1.0007 40 1 2.8859 11.2845 1.9811 41 1 1.4442 11.8285 1.0877 42 1 -0.2775 12.3339 3.2400 43 1 1.8363 7.6570 1.3530 44 1 3.1425 8.5673 2.1545 45 1 1.5143 4.6158 0.0088 46 1 0.2865 2.4886 -0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023608692.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:59 Heat of formation + Delta-G solvation = 1.002928 kcal Electronic energy + Delta-G solvation = -25379.427551 eV Core-core repulsion = 21847.581461 eV Total energy + Delta-G solvation = -3531.846089 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.30410 -39.81419 -39.14300 -36.31975 -35.17281 -34.66787 -32.45275 -32.28516 -31.68478 -30.46360 -27.30225 -26.97808 -24.90369 -23.82971 -23.67680 -22.58382 -21.76559 -20.77609 -20.46606 -19.09276 -18.55087 -17.49088 -16.87447 -16.66531 -16.52577 -15.97857 -15.83652 -15.71427 -15.43951 -15.05328 -15.01480 -14.53976 -14.30839 -14.16161 -13.99546 -13.96345 -13.72557 -13.49787 -13.20441 -13.02127 -12.84904 -12.48533 -12.30952 -12.24445 -11.98329 -11.83799 -11.80693 -11.58607 -11.38796 -11.32979 -11.12047 -10.98329 -10.52152 -10.15753 -10.02853 -9.20741 -8.67410 -7.86178 -5.32474 -0.45389 0.39406 1.28020 1.47951 1.50449 1.56950 2.05958 2.14442 2.51832 2.95458 3.28692 3.56265 3.64086 3.76808 3.88378 3.93734 3.99044 4.00153 4.05880 4.32853 4.34133 4.40501 4.46304 4.56106 4.60200 4.73730 4.76212 4.86898 4.88609 4.93914 5.00365 5.02770 5.10239 5.21009 5.24294 5.30661 5.32908 5.35371 5.37683 5.45948 5.57000 5.65215 5.66965 5.78529 5.81065 5.91727 6.39152 6.47135 7.12457 7.15407 7.86538 8.39033 9.20042 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.003212 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.411054 B = 8714.763700 C =10734.900908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.143 4.143 3 C -0.035 4.035 4 C -0.121 4.121 5 C -0.070 4.070 6 C -0.157 4.157 7 C 0.554 3.446 8 O -0.582 6.582 9 N -0.713 5.713 10 C 0.137 3.863 11 C -0.100 4.100 12 H 0.078 0.922 13 C -0.097 4.097 14 C -0.130 4.130 15 C 0.172 3.828 16 N -0.609 5.609 17 C -0.264 4.264 18 H 0.072 0.928 19 C -0.052 4.052 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.274 1.274 23 H -0.297 1.297 24 H -0.276 1.276 25 C 0.153 3.847 26 C -0.083 4.083 27 C -0.131 4.131 28 H 0.125 0.875 29 H 0.106 0.894 30 H 0.137 0.863 31 H 0.155 0.845 32 H 0.131 0.869 33 H 0.410 0.590 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.054 0.946 40 H -0.008 1.008 41 H 0.052 0.948 42 H 0.249 0.751 43 H 0.056 0.944 44 H 0.005 0.995 45 H 0.140 0.860 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.042 -20.416 -8.796 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C -0.035 4.035 4 C -0.139 4.139 5 C -0.089 4.089 6 C -0.160 4.160 7 C 0.343 3.657 8 O -0.464 6.464 9 N -0.364 5.364 10 C 0.013 3.987 11 C -0.121 4.121 12 H 0.096 0.904 13 C -0.135 4.135 14 C -0.169 4.169 15 C 0.047 3.953 16 N -0.332 5.332 17 C -0.394 4.394 18 H 0.089 0.911 19 C -0.247 4.247 20 N -0.583 5.583 21 Si 0.795 3.205 22 H -0.199 1.199 23 H -0.224 1.224 24 H -0.202 1.202 25 C 0.027 3.973 26 C -0.101 4.101 27 C -0.148 4.148 28 H 0.143 0.857 29 H 0.124 0.876 30 H 0.155 0.845 31 H 0.172 0.828 32 H 0.149 0.851 33 H 0.247 0.753 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.010 0.990 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.022 0.978 45 H 0.157 0.843 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.816 -20.239 -8.695 22.356 hybrid contribution -1.224 0.721 0.506 1.508 sum 2.593 -19.518 -8.189 21.324 Atomic orbital electron populations 1.24764 0.95519 1.03643 0.95618 1.21962 0.95731 0.95403 1.02942 1.19660 0.93600 0.94185 0.96095 1.21479 0.93493 0.98372 1.00535 1.21289 1.00763 0.91257 0.95556 1.19981 0.94402 0.92944 1.08671 1.18608 0.86886 0.84623 0.75567 1.90728 1.15003 1.88283 1.52379 1.45953 1.11129 1.05402 1.73948 1.21327 0.94139 0.81302 1.01976 1.21725 0.96785 0.94119 0.99432 0.90377 1.21342 0.97067 0.93067 1.02060 1.21999 0.97967 0.98406 0.98504 1.20632 0.94402 0.87786 0.92497 1.44290 1.03944 1.01763 1.83169 1.19524 0.84398 1.03298 1.32168 0.91067 1.25824 1.02209 0.99291 0.97370 1.70193 1.35997 1.15418 1.36674 0.85350 0.80544 0.76888 0.77727 1.19932 1.22388 1.20245 1.21013 0.92427 0.89785 0.94070 1.21434 0.92362 0.99740 0.96591 1.21527 1.01338 0.91166 1.00815 0.85689 0.87611 0.84514 0.82766 0.85124 0.75288 0.90728 0.92385 0.92659 0.90088 0.91223 0.92762 0.99011 0.92997 0.94195 0.92574 0.97753 0.84277 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 14.15 66.65 0.94 -0.60 16 2 C -0.14 -1.70 9.90 23.59 0.23 -1.47 16 3 C -0.04 -0.58 5.87 -20.07 -0.12 -0.70 16 4 C -0.12 -2.09 9.76 22.47 0.22 -1.87 16 5 C -0.07 -1.56 9.58 22.48 0.22 -1.34 16 6 C -0.16 -3.87 5.88 -20.05 -0.12 -3.99 16 7 C 0.55 16.36 7.77 86.74 0.67 17.04 16 8 O -0.58 -21.01 16.33 -3.97 -0.06 -21.07 16 9 N -0.71 -19.12 5.28 -466.10 -2.46 -21.58 16 10 C 0.14 3.85 5.07 86.38 0.44 4.29 16 11 C -0.10 -3.12 2.37 -10.71 -0.03 -3.14 16 12 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 13 C -0.10 -2.98 5.17 30.62 0.16 -2.82 16 14 C -0.13 -4.69 6.08 30.67 0.19 -4.51 16 15 C 0.17 8.27 5.30 86.36 0.46 8.73 16 16 N -0.61 -29.84 2.99 -699.09 -2.09 -31.93 16 17 C -0.26 -14.11 9.58 84.03 0.81 -13.31 16 18 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 19 C -0.05 -2.84 4.92 84.86 0.42 -2.43 16 20 N -0.94 -55.35 11.19 21.65 0.24 -55.11 16 21 Si 0.97 43.94 29.59 68.60 2.03 45.97 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 25 C 0.15 6.05 5.60 86.36 0.48 6.53 16 26 C -0.08 -1.68 9.52 22.48 0.21 -1.47 16 27 C -0.13 -2.28 9.38 22.48 0.21 -2.07 16 28 H 0.13 0.75 8.06 -2.91 -0.02 0.72 16 29 H 0.11 0.98 6.02 -2.91 -0.02 0.96 16 30 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.13 2.98 7.64 -2.91 -0.02 2.96 16 33 H 0.41 9.66 5.72 -92.71 -0.53 9.13 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H -0.01 -0.43 8.14 -2.38 -0.02 -0.44 16 41 H 0.05 2.83 6.07 -2.39 -0.01 2.81 16 42 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.06 2.10 7.14 -2.39 -0.02 2.08 16 44 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 45 H 0.14 2.46 6.38 -2.91 -0.02 2.44 16 46 H 0.15 1.95 6.15 -2.91 -0.02 1.93 16 Total: -1.00 -69.21 371.37 3.49 -65.72 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.44 Total: 21.13 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 5.40 Total: -3.13 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -4.31 Total: -108.62 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.06 Total: -21.07 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -69.21 3.49 -65.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023608692.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.718 kcal (2) G-P(sol) polarization free energy of solvation -69.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds