Wall clock time and date at job start Tue Mar 31 2020 11:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32682 * 1 3 3 C 1.47665 * 120.00140 * 2 1 4 4 C 1.39710 * 120.00162 * 179.97438 * 3 2 1 5 5 C 1.37601 * 120.00746 * 180.02562 * 4 3 2 6 6 C 1.39740 * 119.99398 * 0.02562 * 5 4 3 7 7 C 1.47695 * 120.00106 * 179.97438 * 6 5 4 8 8 O 1.21568 * 119.99977 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99872 * 180.27477 * 7 6 5 10 10 C 1.46493 * 119.99897 * 179.72482 * 9 7 6 11 11 C 1.53000 * 109.46958 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.50470 * 55.06388 * 11 10 9 13 13 C 1.53045 * 109.49691 * 175.16210 * 11 10 9 14 14 C 1.53045 * 109.53805 * 181.31268 * 13 11 10 15 15 C 1.53187 * 109.31504 * 298.63408 * 14 13 11 16 16 N 1.46932 * 108.77729 * 54.63284 * 15 14 13 17 17 C 1.36931 * 120.63320 * 126.41574 * 16 15 14 18 18 H 1.08005 * 119.99821 * 331.80880 * 17 16 15 19 19 C 1.38809 * 120.00499 * 151.80901 * 17 16 15 20 20 N 1.31620 * 119.99519 * 343.08804 * 19 17 16 21 21 Si 1.86801 * 120.00253 * 163.08340 * 19 17 16 22 22 H 1.48499 * 109.46828 * 60.00275 * 21 19 17 23 23 H 1.48498 * 109.46853 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47339 * 300.00217 * 21 19 17 25 25 C 1.46927 * 118.73485 * 306.39442 * 16 15 14 26 26 C 1.39736 * 119.99550 * 0.25116 * 6 5 4 27 27 C 1.37606 * 119.99275 * 359.48949 * 26 6 5 28 28 H 1.08002 * 120.00075 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99864 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00075 * 180.02562 * 2 1 3 31 31 H 1.08009 * 119.99401 * 0.02562 * 4 3 2 32 32 H 1.08004 * 120.00127 * 179.97438 * 5 4 3 33 33 H 0.97002 * 119.99833 * 359.72091 * 9 7 6 34 34 H 1.08998 * 109.47220 * 299.99542 * 10 9 7 35 35 H 1.08995 * 109.47383 * 59.99511 * 10 9 7 36 36 H 1.08995 * 109.45649 * 301.33047 * 13 11 10 37 37 H 1.08994 * 109.46310 * 61.29553 * 13 11 10 38 38 H 1.08994 * 109.49649 * 178.67517 * 14 13 11 39 39 H 1.09008 * 109.49627 * 58.58639 * 14 13 11 40 40 H 1.08996 * 109.58509 * 294.84709 * 15 14 13 41 41 H 1.08994 * 109.70569 * 174.49254 * 15 14 13 42 42 H 0.97006 * 119.99854 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.58756 * 293.81436 * 25 16 15 44 44 H 1.09004 * 109.58331 * 173.39072 * 25 16 15 45 45 H 1.08001 * 120.00520 * 179.75242 * 26 6 5 46 46 H 1.08010 * 119.99655 * 180.27300 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 3.4623 1.2788 0.0005 5 6 4.1504 2.4704 0.0011 6 6 3.4518 3.6806 0.0016 7 6 4.1902 4.9596 0.0028 8 8 5.4059 4.9596 0.0037 9 7 3.5163 6.1268 0.0089 10 6 4.2488 7.3954 0.0161 11 6 3.2546 8.5583 0.0227 12 1 2.5709 8.4478 0.8644 13 6 4.0152 9.8800 0.1519 14 6 3.0197 11.0418 0.1916 15 6 2.2210 11.0694 -1.1153 16 7 1.6033 9.7521 -1.3200 17 6 0.2562 9.6396 -1.5386 18 1 -0.4201 10.3781 -1.1341 19 6 -0.2402 8.5763 -2.2801 20 7 0.5681 7.8727 -3.0443 21 14 -2.0554 8.1439 -2.1934 22 1 -2.8630 9.3050 -2.6461 23 1 -2.3289 6.9777 -3.0711 24 1 -2.4172 7.8050 -0.7936 25 6 2.4586 8.5579 -1.2862 26 6 2.0544 3.6805 0.0069 27 6 1.3666 2.4887 0.0010 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8668 -0.9353 -0.0004 31 1 4.0022 0.3434 0.0005 32 1 5.2305 2.4703 0.0019 33 1 2.5463 6.1268 0.0084 34 1 4.8751 7.4484 0.9067 35 1 4.8759 7.4581 -0.8732 36 1 4.6019 9.8730 1.0705 37 1 4.6807 10.0012 -0.7028 38 1 3.5609 11.9808 0.3072 39 1 2.3382 10.9083 1.0318 40 1 2.8890 11.2930 -1.9471 41 1 1.4444 11.8319 -1.0553 42 1 0.2213 7.1294 -3.5622 43 1 3.1459 8.5766 -2.1320 44 1 1.8384 7.6629 -1.3363 45 1 1.5143 4.6157 0.0114 46 1 0.2865 2.4886 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023608693.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:03 Heat of formation + Delta-G solvation = 1.460712 kcal Electronic energy + Delta-G solvation = -25861.181373 eV Core-core repulsion = 22329.355135 eV Total energy + Delta-G solvation = -3531.826238 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.31065 -39.81761 -39.14306 -36.21688 -35.18563 -34.80533 -32.79350 -31.98989 -31.52611 -30.50186 -27.36079 -26.98924 -24.92888 -23.86549 -23.71318 -22.46499 -21.76385 -20.76686 -20.47585 -19.08065 -18.63979 -17.51160 -16.96181 -16.71131 -16.34652 -15.98845 -15.85559 -15.72403 -15.35146 -15.10066 -14.99734 -14.55388 -14.32985 -14.17617 -14.02595 -13.99355 -13.74786 -13.53239 -13.23140 -12.92969 -12.86998 -12.51759 -12.26254 -12.26069 -12.01074 -11.85340 -11.79928 -11.56615 -11.37484 -11.34958 -11.11255 -10.98801 -10.53987 -10.14955 -10.05560 -9.22897 -8.66149 -7.85669 -5.32082 -0.47587 0.36605 1.26029 1.48219 1.48704 1.56438 2.03757 2.16489 2.51901 2.93094 3.26667 3.56493 3.63353 3.73955 3.86434 3.91164 3.99200 4.06513 4.13426 4.30168 4.31656 4.34867 4.43899 4.52635 4.61728 4.72133 4.79323 4.85857 4.87573 4.91544 4.99810 5.02961 5.14861 5.21687 5.21866 5.29272 5.32249 5.34430 5.37850 5.46771 5.54980 5.62247 5.66819 5.76756 5.78879 5.90213 6.39742 6.44566 7.09747 7.15951 7.86824 8.39691 9.19486 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011057 B = 0.004170 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.746241 B = 6712.270450 C = 8895.660214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.139 4.139 3 C -0.034 4.034 4 C -0.118 4.118 5 C -0.067 4.067 6 C -0.157 4.157 7 C 0.553 3.447 8 O -0.581 6.581 9 N -0.713 5.713 10 C 0.137 3.863 11 C -0.112 4.112 12 H 0.071 0.929 13 C -0.099 4.099 14 C -0.121 4.121 15 C 0.135 3.865 16 N -0.611 5.611 17 C -0.266 4.266 18 H 0.065 0.935 19 C -0.043 4.043 20 N -0.931 5.931 21 Si 0.961 3.039 22 H -0.280 1.280 23 H -0.294 1.294 24 H -0.274 1.274 25 C 0.190 3.810 26 C -0.085 4.085 27 C -0.132 4.132 28 H 0.101 0.899 29 H 0.128 0.872 30 H 0.142 0.858 31 H 0.160 0.840 32 H 0.135 0.865 33 H 0.406 0.594 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.009 0.991 41 H 0.052 0.948 42 H 0.250 0.750 43 H -0.015 1.015 44 H 0.062 0.938 45 H 0.128 0.872 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.555 -12.227 9.305 15.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C -0.035 4.035 4 C -0.136 4.136 5 C -0.086 4.086 6 C -0.160 4.160 7 C 0.342 3.658 8 O -0.463 6.463 9 N -0.363 5.363 10 C 0.013 3.987 11 C -0.132 4.132 12 H 0.089 0.911 13 C -0.137 4.137 14 C -0.160 4.160 15 C 0.010 3.990 16 N -0.334 5.334 17 C -0.397 4.397 18 H 0.082 0.918 19 C -0.239 4.239 20 N -0.577 5.577 21 Si 0.789 3.211 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.199 1.199 25 C 0.064 3.936 26 C -0.104 4.104 27 C -0.150 4.150 28 H 0.119 0.881 29 H 0.146 0.854 30 H 0.160 0.840 31 H 0.178 0.822 32 H 0.152 0.848 33 H 0.243 0.757 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.003 0.997 44 H 0.081 0.919 45 H 0.145 0.855 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.351 -12.275 9.192 15.697 hybrid contribution -1.304 0.112 -0.632 1.454 sum 2.046 -12.163 8.560 15.013 Atomic orbital electron populations 1.24763 0.95614 1.03547 0.95812 1.21972 0.95656 0.95332 1.02754 1.19659 0.93729 0.94004 0.96076 1.21508 0.93328 0.98427 1.00304 1.21300 1.00835 0.91032 0.95445 1.19999 0.94186 0.93232 1.08569 1.18615 0.86933 0.84631 0.75617 1.90697 1.14708 1.88301 1.52637 1.46008 1.11057 1.05692 1.73585 1.21335 0.94233 0.81615 1.01520 1.21920 0.96813 0.94418 1.00076 0.91058 1.21362 0.97261 0.93058 1.02020 1.21867 0.97836 0.98498 0.97792 1.21123 0.95302 0.87449 0.95154 1.44320 1.04290 1.01365 1.83448 1.19473 0.83586 1.10292 1.26309 0.91764 1.25721 1.01232 1.00725 0.96216 1.70195 1.35877 1.22456 1.29135 0.85443 0.80784 0.77243 0.77613 1.20608 1.21999 1.19944 1.20566 0.91138 0.90742 0.91152 1.21374 0.92701 0.99485 0.96859 1.21488 1.01170 0.91290 1.01031 0.88076 0.85391 0.84032 0.82218 0.84758 0.75674 0.90531 0.93028 0.90083 0.92705 0.89803 0.92382 0.97308 0.92961 0.94121 0.99664 0.91925 0.85467 0.83565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 14.15 66.65 0.94 -1.17 16 2 C -0.14 -2.10 9.90 23.59 0.23 -1.87 16 3 C -0.03 -0.71 5.87 -20.08 -0.12 -0.83 16 4 C -0.12 -2.44 9.76 22.48 0.22 -2.22 16 5 C -0.07 -1.77 9.57 22.48 0.22 -1.56 16 6 C -0.16 -4.77 5.88 -20.05 -0.12 -4.89 16 7 C 0.55 19.64 7.77 86.74 0.67 20.31 16 8 O -0.58 -23.61 16.33 -3.93 -0.06 -23.68 16 9 N -0.71 -24.39 5.28 -466.14 -2.46 -26.85 16 10 C 0.14 4.63 5.07 86.38 0.44 5.07 16 11 C -0.11 -3.97 2.38 -10.71 -0.03 -4.00 16 12 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 13 C -0.10 -3.04 5.17 30.62 0.16 -2.88 16 14 C -0.12 -3.82 6.08 30.67 0.19 -3.63 16 15 C 0.14 5.52 6.52 86.36 0.56 6.08 16 16 N -0.61 -30.06 2.99 -699.10 -2.09 -32.15 16 17 C -0.27 -14.31 9.58 84.03 0.81 -13.51 16 18 H 0.06 3.38 7.89 -2.91 -0.02 3.36 16 19 C -0.04 -2.33 4.92 84.86 0.42 -1.91 16 20 N -0.93 -53.41 11.20 21.65 0.24 -53.17 16 21 Si 0.96 43.14 29.59 68.60 2.03 45.17 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 C 0.19 8.81 4.39 86.36 0.38 9.19 16 26 C -0.09 -2.35 9.52 22.48 0.21 -2.14 16 27 C -0.13 -3.08 9.38 22.48 0.21 -2.87 16 28 H 0.10 1.38 6.02 -2.91 -0.02 1.37 16 29 H 0.13 1.11 8.06 -2.91 -0.02 1.09 16 30 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 31 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.13 3.50 7.64 -2.91 -0.02 3.48 16 33 H 0.41 13.56 5.71 -92.71 -0.53 13.03 16 34 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 42 H 0.25 13.98 8.31 -92.70 -0.77 13.20 16 43 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 44 H 0.06 3.18 5.26 -2.38 -0.01 3.17 16 45 H 0.13 3.48 6.38 -2.91 -0.02 3.46 16 46 H 0.15 2.83 6.15 -2.91 -0.02 2.81 16 Total: -1.00 -67.57 371.35 3.49 -64.07 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.44 Total: 29.43 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 5.40 Total: -2.83 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -4.31 Total: -112.17 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.06 Total: -23.68 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -67.57 3.49 -64.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023608693.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.534 kcal (2) G-P(sol) polarization free energy of solvation -67.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds