Wall clock time and date at job start Tue Mar 31 2020 10:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37982 * 120.07362 * 2 1 4 4 C 1.38338 * 120.14348 * 180.25531 * 3 2 1 5 5 C 1.38378 * 120.29169 * 359.73995 * 4 3 2 6 6 C 1.37933 * 120.14903 * 359.97438 * 5 4 3 7 7 C 1.39552 * 120.07391 * 179.72165 * 2 1 3 8 8 C 1.47850 * 120.14596 * 0.02562 * 7 2 1 9 9 O 1.21546 * 119.99797 * 306.13422 * 8 7 2 10 10 N 1.34776 * 119.99759 * 126.12642 * 8 7 2 11 11 C 1.47207 * 126.70595 * 4.24501 * 10 8 7 12 12 C 1.53780 * 106.38195 * 148.71673 * 11 10 8 13 13 H 1.08998 * 112.38676 * 256.84752 * 12 11 10 14 14 C 1.54323 * 109.06427 * 132.43144 * 12 11 10 15 15 C 1.55052 * 103.93905 * 222.03922 * 14 12 11 16 16 C 1.55059 * 102.10851 * 40.05156 * 15 14 12 17 17 H 1.09003 * 110.53087 * 201.32864 * 16 15 14 18 18 N 1.46498 * 110.65031 * 78.62170 * 16 15 14 19 19 C 1.36939 * 120.00057 * 120.63165 * 18 16 15 20 20 H 1.07994 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.38809 * 119.99917 * 179.97438 * 19 18 16 22 22 N 1.31623 * 120.00223 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00123 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47374 * 89.99866 * 23 21 19 25 25 H 1.48503 * 109.47039 * 210.00378 * 23 21 19 26 26 H 1.48499 * 109.46780 * 329.99750 * 23 21 19 27 27 C 1.54322 * 103.93830 * 319.94818 * 16 15 14 28 28 H 1.08999 * 111.68539 * 262.79586 * 27 16 15 29 29 C 1.47211 * 126.70057 * 184.24746 * 10 8 7 30 30 H 1.09000 * 109.47416 * 265.12780 * 1 2 3 31 31 H 1.09002 * 109.46930 * 25.12887 * 1 2 3 32 32 H 1.09003 * 109.47161 * 145.12596 * 1 2 3 33 33 H 1.07997 * 119.92596 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.85457 * 179.72257 * 4 3 2 35 35 H 1.08007 * 119.92923 * 180.02562 * 5 4 3 36 36 H 1.08001 * 120.07722 * 179.97438 * 6 5 4 37 37 H 1.08998 * 110.07502 * 29.48734 * 11 10 8 38 38 H 1.09000 * 110.07839 * 267.94818 * 11 10 8 39 39 H 1.09007 * 110.53476 * 340.65027 * 14 12 11 40 40 H 1.08998 * 110.53948 * 103.42084 * 14 12 11 41 41 H 1.08992 * 110.90955 * 158.25644 * 15 14 12 42 42 H 1.09005 * 110.90223 * 281.85857 * 15 14 12 43 43 H 0.97000 * 120.00251 * 300.62683 * 18 16 15 44 44 H 0.96996 * 120.00532 * 180.02562 * 22 21 19 45 45 H 1.09000 * 110.07618 * 92.05173 * 29 10 8 46 46 H 1.08999 * 110.12068 * 330.53136 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1958 -0.0053 5 6 4.2812 0.0018 -0.0053 6 6 3.6023 -1.1989 0.0006 7 6 2.2063 -1.2076 0.0059 8 6 1.4720 -2.4909 0.0115 9 8 0.6311 -2.7061 0.8624 10 7 1.7349 -3.4219 -0.9269 11 6 2.7754 -3.3543 -1.9660 12 6 3.2209 -4.8025 -2.2285 13 1 4.1787 -5.0332 -1.7621 14 6 3.2533 -5.0519 -3.7511 15 6 2.6344 -6.4644 -3.9116 16 6 1.4778 -6.4318 -2.8794 17 1 1.1860 -7.4443 -2.6001 18 7 0.3289 -5.6964 -3.4137 19 6 -0.8839 -6.3195 -3.5409 20 1 -0.9933 -7.3531 -3.2477 21 6 -1.9725 -5.6225 -4.0467 22 7 -1.8390 -4.3629 -4.4046 23 14 -3.6271 -6.4721 -4.2196 24 1 -4.4087 -6.2929 -2.9698 25 1 -4.3720 -5.8781 -5.3588 26 1 -3.4160 -7.9209 -4.4680 27 6 2.0808 -5.6887 -1.6687 28 1 2.4431 -6.3823 -0.9100 29 6 1.0377 -4.7050 -1.1128 30 1 -0.3634 -0.0873 1.0239 31 1 -0.3633 0.9304 -0.4364 32 1 -0.3634 -0.8431 -0.5876 33 1 1.6584 2.1294 -0.0004 34 1 4.1183 2.1331 -0.0098 35 1 5.3613 0.0099 -0.0090 36 1 4.1493 -2.1301 0.0003 37 1 3.6191 -2.7615 -1.6127 38 1 2.3664 -2.9177 -2.8772 39 1 2.6505 -4.3087 -4.2732 40 1 4.2794 -5.0400 -4.1189 41 1 2.2505 -6.6084 -4.9214 42 1 3.3596 -7.2378 -3.6586 43 1 0.4273 -4.7682 -3.6774 44 1 -2.5998 -3.8757 -4.7577 45 1 0.2193 -4.5866 -1.8230 46 1 0.6550 -5.0656 -0.1580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026183468.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:15 Heat of formation + Delta-G solvation = 9.450830 kcal Electronic energy + Delta-G solvation = -26980.246884 eV Core-core repulsion = 23448.767124 eV Total energy + Delta-G solvation = -3531.479761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.49546 -39.28050 -37.72321 -34.96837 -33.37512 -32.73775 -31.47516 -30.88306 -29.00990 -28.34246 -26.98461 -25.13412 -24.26065 -23.40216 -22.47279 -21.51518 -19.82758 -19.13474 -18.66247 -17.52303 -17.10096 -16.26963 -15.74069 -15.46818 -15.27235 -14.81782 -14.45325 -14.15393 -13.84507 -13.52719 -13.44747 -13.29690 -13.12523 -12.85509 -12.54684 -12.41965 -12.11433 -12.02895 -11.89650 -11.46632 -11.24423 -11.12587 -10.93844 -10.78475 -10.66301 -10.51510 -10.25613 -10.23992 -10.09864 -9.98303 -9.63046 -9.49978 -9.00195 -8.97023 -8.73574 -8.16570 -6.98568 -5.82766 -3.12154 1.01616 1.27716 2.94486 3.32654 3.42335 3.47833 3.48959 3.74432 4.54908 4.57328 4.73256 4.78430 4.80495 4.88347 5.03769 5.06655 5.23774 5.37515 5.50342 5.53960 5.61446 5.66494 5.67952 5.73871 5.79681 5.81867 5.85708 5.90254 6.01489 6.06716 6.10059 6.19714 6.24542 6.26176 6.32201 6.34117 6.45039 6.51176 6.53007 6.68053 6.70196 6.82524 6.83878 6.93406 7.14344 7.67388 7.92367 8.35130 8.47120 9.46970 10.01420 10.35936 11.38919 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.004400 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.937739 B = 6362.344114 C = 7577.909274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.035 4.035 3 C -0.126 4.126 4 C -0.103 4.103 5 C -0.133 4.133 6 C -0.089 4.089 7 C -0.117 4.117 8 C 0.572 3.428 9 O -0.538 6.538 10 N -0.603 5.603 11 C 0.101 3.899 12 C -0.099 4.099 13 H 0.079 0.921 14 C -0.113 4.113 15 C -0.142 4.142 16 C 0.177 3.823 17 H 0.067 0.933 18 N -0.707 5.707 19 C -0.249 4.249 20 H 0.073 0.927 21 C -0.008 4.008 22 N -0.929 5.929 23 Si 0.906 3.094 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.121 4.121 28 H 0.076 0.924 29 C 0.093 3.907 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.128 0.872 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.646 7.651 5.863 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.036 4.036 3 C -0.144 4.144 4 C -0.121 4.121 5 C -0.151 4.151 6 C -0.107 4.107 7 C -0.120 4.120 8 C 0.360 3.640 9 O -0.417 6.417 10 N -0.335 5.335 11 C -0.022 4.022 12 C -0.119 4.119 13 H 0.097 0.903 14 C -0.151 4.151 15 C -0.182 4.182 16 C 0.065 3.935 17 H 0.086 0.914 18 N -0.347 5.347 19 C -0.379 4.379 20 H 0.091 0.909 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.143 4.143 28 H 0.094 0.906 29 C -0.028 4.028 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.221 0.779 44 H 0.066 0.934 45 H 0.145 0.855 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.963 7.480 6.344 17.064 hybrid contribution -0.686 -0.066 -0.230 0.726 sum 13.278 7.415 6.114 16.391 Atomic orbital electron populations 1.20866 0.90319 1.02968 1.03347 1.19960 0.96581 0.91557 0.95508 1.21001 0.94274 0.97304 1.01848 1.21249 0.94206 0.98124 0.98528 1.21028 0.99911 0.92188 1.01945 1.21250 0.92717 0.98581 0.98191 1.19864 0.93897 0.93281 1.04932 1.17838 0.82648 0.82842 0.80658 1.90775 1.34383 1.79299 1.37194 1.48508 1.35226 1.19641 1.30090 1.22408 0.90705 0.97492 0.91592 1.22552 0.98445 0.93830 0.97042 0.90259 1.22481 0.99951 0.98699 0.93923 1.23164 0.98313 0.95411 1.01317 1.21035 0.87526 0.94951 0.90032 0.91445 1.42486 1.05525 1.12457 1.74182 1.19304 0.86803 0.95724 1.36110 0.90945 1.24731 0.98141 0.96032 1.01511 1.69648 1.30567 1.08633 1.48829 0.86215 0.84288 0.78528 0.77299 1.21623 1.21822 1.20732 1.23137 0.94608 0.97093 0.99429 0.90574 1.22767 0.96946 0.80584 1.02535 0.90252 0.91500 0.90826 0.85533 0.85845 0.85689 0.85495 0.91032 0.90982 0.91042 0.92550 0.91199 0.92472 0.77885 0.93398 0.85524 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 8.99 36.00 0.32 -1.38 16 2 C -0.04 -0.50 5.91 -104.23 -0.62 -1.12 16 3 C -0.13 -1.43 9.67 -39.64 -0.38 -1.81 16 4 C -0.10 -1.02 10.04 -39.49 -0.40 -1.42 16 5 C -0.13 -1.35 10.03 -39.64 -0.40 -1.75 16 6 C -0.09 -1.10 8.02 -39.18 -0.31 -1.41 16 7 C -0.12 -1.79 5.31 -104.97 -0.56 -2.34 16 8 C 0.57 10.60 6.33 -12.33 -0.08 10.52 16 9 O -0.54 -11.78 16.35 5.33 0.09 -11.69 16 10 N -0.60 -10.65 3.32 -172.70 -0.57 -11.22 16 11 C 0.10 1.48 6.28 -3.25 -0.02 1.46 16 12 C -0.10 -1.37 3.91 -88.53 -0.35 -1.72 16 13 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.11 -1.58 6.17 -24.95 -0.15 -1.73 16 15 C -0.14 -2.21 6.61 -24.56 -0.16 -2.38 16 16 C 0.18 3.24 3.53 -66.15 -0.23 3.00 16 17 H 0.07 1.26 7.84 -51.93 -0.41 0.85 16 18 N -0.71 -16.28 2.98 -51.71 -0.15 -16.43 16 19 C -0.25 -6.52 9.89 -15.06 -0.15 -6.67 16 20 H 0.07 1.86 7.68 -52.49 -0.40 1.45 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 22 N -0.93 -27.07 13.06 55.49 0.72 -26.35 16 23 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.12 -1.97 3.90 -88.54 -0.34 -2.32 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 C 0.09 1.81 6.38 -3.25 -0.02 1.79 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.78 8.05 -51.93 -0.42 0.37 16 32 H 0.07 1.27 7.16 -51.93 -0.37 0.89 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.13 1.40 6.88 -52.49 -0.36 1.04 16 37 H 0.07 0.88 4.91 -51.93 -0.25 0.62 16 38 H 0.07 1.13 7.13 -51.93 -0.37 0.76 16 39 H 0.07 1.13 7.00 -51.93 -0.36 0.76 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.39 9.55 7.03 -40.82 -0.29 9.26 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.13 2.98 5.22 -51.93 -0.27 2.70 16 46 H 0.06 1.30 7.88 -51.93 -0.41 0.89 16 LS Contribution 361.16 15.07 5.44 5.44 Total: -1.00 -30.70 361.16 -10.30 -41.00 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -6.86 Total: 11.85 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -3.95 Total: -9.58 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.00 Total: -54.00 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.70 -10.30 -41.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026183468.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.454 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds