Wall clock time and date at job start Tue Mar 31 2020 10:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37982 * 120.07362 * 2 1 4 4 C 1.38338 * 120.14348 * 180.25531 * 3 2 1 5 5 C 1.38378 * 120.29169 * 359.73995 * 4 3 2 6 6 C 1.37933 * 120.14903 * 359.97438 * 5 4 3 7 7 C 1.39552 * 120.07391 * 179.72165 * 2 1 3 8 8 C 1.47850 * 120.14596 * 0.02562 * 7 2 1 9 9 O 1.21546 * 119.99797 * 306.13422 * 8 7 2 10 10 N 1.34776 * 119.99759 * 126.12642 * 8 7 2 11 11 C 1.47207 * 126.70595 * 4.24501 * 10 8 7 12 12 C 1.53780 * 106.38195 * 148.71673 * 11 10 8 13 13 H 1.08998 * 112.38676 * 256.84752 * 12 11 10 14 14 C 1.54323 * 109.06427 * 132.43144 * 12 11 10 15 15 C 1.55052 * 103.93905 * 222.03922 * 14 12 11 16 16 C 1.55059 * 102.10851 * 40.05156 * 15 14 12 17 17 H 1.09003 * 110.53087 * 201.32864 * 16 15 14 18 18 N 1.46498 * 110.65031 * 78.62170 * 16 15 14 19 19 C 1.36939 * 120.00057 * 120.63165 * 18 16 15 20 20 H 1.07994 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.38809 * 119.99917 * 179.97438 * 19 18 16 22 22 N 1.31623 * 120.00223 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00123 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47374 * 89.99866 * 23 21 19 25 25 H 1.48503 * 109.47039 * 210.00378 * 23 21 19 26 26 H 1.48499 * 109.46780 * 329.99750 * 23 21 19 27 27 C 1.54322 * 103.93830 * 319.94818 * 16 15 14 28 28 H 1.08999 * 111.68539 * 262.79586 * 27 16 15 29 29 C 1.47211 * 126.70057 * 184.24746 * 10 8 7 30 30 H 1.09000 * 109.47416 * 265.12780 * 1 2 3 31 31 H 1.09002 * 109.46930 * 25.12887 * 1 2 3 32 32 H 1.09003 * 109.47161 * 145.12596 * 1 2 3 33 33 H 1.07997 * 119.92596 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.85457 * 179.72257 * 4 3 2 35 35 H 1.08007 * 119.92923 * 180.02562 * 5 4 3 36 36 H 1.08001 * 120.07722 * 179.97438 * 6 5 4 37 37 H 1.08998 * 110.07502 * 29.48734 * 11 10 8 38 38 H 1.09000 * 110.07839 * 267.94818 * 11 10 8 39 39 H 1.09007 * 110.53476 * 340.65027 * 14 12 11 40 40 H 1.08998 * 110.53948 * 103.42084 * 14 12 11 41 41 H 1.08992 * 110.90955 * 158.25644 * 15 14 12 42 42 H 1.09005 * 110.90223 * 281.85857 * 15 14 12 43 43 H 0.97000 * 120.00251 * 300.62683 * 18 16 15 44 44 H 0.96996 * 120.00532 * 180.02562 * 22 21 19 45 45 H 1.09000 * 110.07618 * 92.05173 * 29 10 8 46 46 H 1.08999 * 110.12068 * 330.53136 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1958 -0.0053 5 6 4.2812 0.0018 -0.0053 6 6 3.6023 -1.1989 0.0006 7 6 2.2063 -1.2076 0.0059 8 6 1.4720 -2.4909 0.0115 9 8 0.6311 -2.7061 0.8624 10 7 1.7349 -3.4219 -0.9269 11 6 2.7754 -3.3543 -1.9660 12 6 3.2209 -4.8025 -2.2285 13 1 4.1787 -5.0332 -1.7621 14 6 3.2533 -5.0519 -3.7511 15 6 2.6344 -6.4644 -3.9116 16 6 1.4778 -6.4318 -2.8794 17 1 1.1860 -7.4443 -2.6001 18 7 0.3289 -5.6964 -3.4137 19 6 -0.8839 -6.3195 -3.5409 20 1 -0.9933 -7.3531 -3.2477 21 6 -1.9725 -5.6225 -4.0467 22 7 -1.8390 -4.3629 -4.4046 23 14 -3.6271 -6.4721 -4.2196 24 1 -4.4087 -6.2929 -2.9698 25 1 -4.3720 -5.8781 -5.3588 26 1 -3.4160 -7.9209 -4.4680 27 6 2.0808 -5.6887 -1.6687 28 1 2.4431 -6.3823 -0.9100 29 6 1.0377 -4.7050 -1.1128 30 1 -0.3634 -0.0873 1.0239 31 1 -0.3633 0.9304 -0.4364 32 1 -0.3634 -0.8431 -0.5876 33 1 1.6584 2.1294 -0.0004 34 1 4.1183 2.1331 -0.0098 35 1 5.3613 0.0099 -0.0090 36 1 4.1493 -2.1301 0.0003 37 1 3.6191 -2.7615 -1.6127 38 1 2.3664 -2.9177 -2.8772 39 1 2.6505 -4.3087 -4.2732 40 1 4.2794 -5.0400 -4.1189 41 1 2.2505 -6.6084 -4.9214 42 1 3.3596 -7.2378 -3.6586 43 1 0.4273 -4.7682 -3.6774 44 1 -2.5998 -3.8757 -4.7577 45 1 0.2193 -4.5866 -1.8230 46 1 0.6550 -5.0656 -0.1580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026183468.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:14 Heat of formation + Delta-G solvation = -7.937239 kcal Electronic energy + Delta-G solvation = -26981.000888 eV Core-core repulsion = 23448.767124 eV Total energy + Delta-G solvation = -3532.233764 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.79020 -40.44872 -39.01072 -36.54565 -35.08932 -33.72737 -32.70200 -32.46225 -30.36707 -29.83733 -28.03674 -26.65642 -25.59665 -25.12170 -23.57629 -22.52995 -21.14053 -20.37850 -20.08058 -19.40319 -18.37975 -17.43138 -17.05462 -16.64360 -16.55628 -16.49044 -15.78105 -15.54277 -15.22938 -14.87754 -14.75414 -14.67110 -14.35271 -14.14892 -13.96274 -13.65298 -13.44906 -13.26250 -13.02710 -12.96312 -12.87796 -12.54893 -12.33314 -12.18285 -12.11298 -12.05051 -11.84779 -11.55553 -11.49907 -11.43489 -11.32320 -10.96788 -10.85683 -9.96138 -9.69971 -9.63279 -8.90662 -7.95059 -5.21059 0.04206 0.38906 1.44600 1.46650 1.53640 1.58673 2.03714 2.54944 2.77948 3.32847 3.40443 3.52561 3.73465 3.82617 3.86314 3.91104 4.12398 4.15214 4.30628 4.35626 4.39040 4.47708 4.52517 4.57188 4.60291 4.62688 4.67534 4.74689 4.76667 4.80707 4.90257 4.97028 5.02135 5.11141 5.15814 5.16493 5.29582 5.38158 5.41162 5.43625 5.48044 5.50593 5.54812 5.58355 5.65416 5.98475 6.27356 6.54667 7.04652 7.34175 8.11156 8.32474 9.27696 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.004400 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.937739 B = 6362.344114 C = 7577.909274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.062 4.062 3 C -0.126 4.126 4 C -0.092 4.092 5 C -0.122 4.122 6 C -0.093 4.093 7 C -0.146 4.146 8 C 0.565 3.435 9 O -0.589 6.589 10 N -0.604 5.604 11 C 0.100 3.900 12 C -0.086 4.086 13 H 0.120 0.880 14 C -0.106 4.106 15 C -0.132 4.132 16 C 0.164 3.836 17 H 0.062 0.938 18 N -0.715 5.715 19 C -0.238 4.238 20 H 0.077 0.923 21 C -0.071 4.071 22 N -0.967 5.967 23 Si 0.963 3.037 24 H -0.296 1.296 25 H -0.297 1.297 26 H -0.266 1.266 27 C -0.111 4.111 28 H 0.098 0.902 29 C 0.096 3.904 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.030 0.970 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.141 0.859 37 H 0.104 0.896 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.374 0.626 44 H 0.248 0.752 45 H 0.082 0.918 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.998 8.394 6.047 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.063 4.063 3 C -0.144 4.144 4 C -0.110 4.110 5 C -0.140 4.140 6 C -0.111 4.111 7 C -0.149 4.149 8 C 0.355 3.645 9 O -0.471 6.471 10 N -0.335 5.335 11 C -0.021 4.021 12 C -0.105 4.105 13 H 0.138 0.862 14 C -0.144 4.144 15 C -0.171 4.171 16 C 0.054 3.946 17 H 0.080 0.920 18 N -0.354 5.354 19 C -0.370 4.370 20 H 0.095 0.905 21 C -0.264 4.264 22 N -0.617 5.617 23 Si 0.793 3.207 24 H -0.224 1.224 25 H -0.224 1.224 26 H -0.191 1.191 27 C -0.132 4.132 28 H 0.117 0.883 29 C -0.027 4.027 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.049 0.951 33 H 0.168 0.832 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.158 0.842 37 H 0.122 0.878 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.112 0.888 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.208 0.792 44 H 0.057 0.943 45 H 0.100 0.900 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 18.378 8.177 6.520 21.145 hybrid contribution -1.976 -0.275 -0.222 2.007 sum 16.402 7.902 6.297 19.265 Atomic orbital electron populations 1.20771 0.91716 1.02317 1.02167 1.20070 0.96047 0.92697 0.97511 1.21298 0.95403 0.96810 1.00848 1.21751 0.93526 0.99813 0.95918 1.21486 1.01761 0.91116 0.99639 1.21440 0.91169 1.00444 0.98035 1.19761 0.95331 0.91498 1.08301 1.18586 0.82136 0.83900 0.79890 1.90721 1.36726 1.80360 1.39305 1.48610 1.35544 1.18838 1.30503 1.22574 0.90628 0.98851 0.90090 1.22612 0.98883 0.92042 0.96937 0.86172 1.22442 1.01431 0.96718 0.93814 1.23036 0.97516 0.97626 0.98939 1.21350 0.87303 0.94297 0.91654 0.91977 1.42569 1.06135 1.12175 1.74541 1.19682 0.88043 0.95751 1.33508 0.90483 1.25423 1.01281 0.96716 1.02932 1.69800 1.30806 1.10056 1.51063 0.85283 0.80635 0.78308 0.76440 1.22355 1.22415 1.19117 1.23056 0.94529 0.96796 0.98849 0.88333 1.22448 0.97397 0.82761 1.00097 0.91213 0.88978 0.95109 0.83203 0.81970 0.81884 0.84171 0.87775 0.92756 0.93604 0.88812 0.93250 0.89034 0.79227 0.94317 0.90003 0.94258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.51 8.99 71.24 0.64 -2.87 16 2 C -0.06 -1.78 5.91 -19.61 -0.12 -1.90 16 3 C -0.13 -2.53 9.67 22.23 0.21 -2.32 16 4 C -0.09 -1.40 10.04 22.33 0.22 -1.17 16 5 C -0.12 -1.91 10.03 22.23 0.22 -1.69 16 6 C -0.09 -2.04 8.02 22.53 0.18 -1.86 16 7 C -0.15 -4.49 5.31 -20.09 -0.11 -4.59 16 8 C 0.56 22.14 6.33 86.79 0.55 22.69 16 9 O -0.59 -28.05 16.35 -3.86 -0.06 -28.11 16 10 N -0.60 -22.18 3.32 -818.59 -2.72 -24.90 16 11 C 0.10 2.83 6.28 86.51 0.54 3.38 16 12 C -0.09 -2.12 3.91 -9.44 -0.04 -2.16 16 13 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 14 C -0.11 -2.69 6.17 31.75 0.20 -2.50 16 15 C -0.13 -3.82 6.61 32.00 0.21 -3.61 16 16 C 0.16 5.97 3.53 46.15 0.16 6.14 16 17 H 0.06 2.29 7.84 -2.39 -0.02 2.28 16 18 N -0.72 -34.32 2.98 -317.50 -0.95 -35.27 16 19 C -0.24 -12.94 9.89 84.03 0.83 -12.11 16 20 H 0.08 4.03 7.68 -2.91 -0.02 4.01 16 21 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 22 N -0.97 -59.47 13.06 21.65 0.28 -59.18 16 23 Si 0.96 46.96 29.55 68.60 2.03 48.99 16 24 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 25 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 C -0.11 -3.53 3.90 -9.44 -0.04 -3.56 16 28 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 29 C 0.10 3.94 6.38 86.50 0.55 4.50 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.09 2.24 8.05 -2.39 -0.02 2.22 16 32 H 0.03 1.18 7.16 -2.39 -0.02 1.16 16 33 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 34 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 35 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 36 H 0.14 2.61 6.88 -2.91 -0.02 2.59 16 37 H 0.10 2.25 4.91 -2.39 -0.01 2.24 16 38 H 0.05 1.73 7.13 -2.39 -0.02 1.72 16 39 H 0.05 1.41 7.00 -2.38 -0.02 1.40 16 40 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.37 19.64 7.03 -92.71 -0.65 18.99 16 44 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 45 H 0.08 4.18 5.22 -2.39 -0.01 4.17 16 46 H 0.04 1.74 7.88 -2.39 -0.02 1.72 16 Total: -1.00 -74.67 361.16 3.62 -71.05 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.34 Total: 34.68 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 4.70 Total: -7.25 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -3.38 Total: -119.35 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.06 Total: -28.11 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -74.67 3.62 -71.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026183468.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.111 kcal (2) G-P(sol) polarization free energy of solvation -74.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds