Wall clock time and date at job start Tue Mar 31 2020 10:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38377 * 119.93005 * 2 1 4 4 C 1.38330 * 120.29628 * 180.02562 * 3 2 1 5 5 C 1.37977 * 120.14319 * 359.70518 * 4 3 2 6 6 C 1.39561 * 119.85048 * 0.57379 * 5 4 3 7 7 C 1.47845 * 120.14074 * 179.72498 * 6 5 4 8 8 O 1.21564 * 119.99833 * 159.93784 * 7 6 5 9 9 N 1.34779 * 120.00645 * 339.93522 * 7 6 5 10 10 C 1.47207 * 126.70470 * 173.98804 * 9 7 6 11 11 C 1.53777 * 106.37741 * 148.71869 * 10 9 7 12 12 H 1.08999 * 111.71349 * 257.23590 * 11 10 9 13 13 C 1.54328 * 109.06315 * 132.42896 * 11 10 9 14 14 C 1.55056 * 103.93810 * 222.03355 * 13 11 10 15 15 C 1.55053 * 102.10699 * 40.05750 * 14 13 11 16 16 H 1.08999 * 110.53461 * 78.55699 * 15 14 13 17 17 N 1.46503 * 110.65291 * 201.27150 * 15 14 13 18 18 C 1.36940 * 119.99854 * 271.54852 * 17 15 14 19 19 H 1.07996 * 120.00194 * 0.02562 * 18 17 15 20 20 C 1.38816 * 119.99736 * 179.97438 * 18 17 15 21 21 N 1.31613 * 120.00447 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99461 * 180.02562 * 20 18 17 23 23 H 1.48489 * 109.47810 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46957 * 120.00597 * 22 20 18 25 25 H 1.48505 * 109.47140 * 240.00119 * 22 20 18 26 26 C 1.54325 * 103.93835 * 319.94301 * 15 14 13 27 27 H 1.09004 * 111.68773 * 262.79272 * 26 15 14 28 28 C 1.47218 * 126.69688 * 353.99078 * 9 7 6 29 29 C 1.37934 * 119.92499 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46822 * 269.97827 * 1 2 3 31 31 H 1.08998 * 109.47297 * 29.97351 * 1 2 3 32 32 H 1.08997 * 109.47399 * 149.97675 * 1 2 3 33 33 H 1.08003 * 119.85046 * 0.02562 * 3 2 1 34 34 H 1.08005 * 119.93113 * 179.97438 * 4 3 2 35 35 H 1.08001 * 120.07614 * 180.27404 * 5 4 3 36 36 H 1.08998 * 110.07467 * 29.49442 * 10 9 7 37 37 H 1.09002 * 110.07813 * 267.95097 * 10 9 7 38 38 H 1.08997 * 110.53576 * 340.64524 * 13 11 10 39 39 H 1.09000 * 110.53027 * 103.42029 * 13 11 10 40 40 H 1.09004 * 110.90239 * 281.85747 * 14 13 11 41 41 H 1.08999 * 110.90669 * 158.26069 * 14 13 11 42 42 H 0.97004 * 120.00065 * 91.55610 * 17 15 14 43 43 H 0.96995 * 120.00596 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.06829 * 92.05294 * 28 9 7 45 45 H 1.08996 * 110.07370 * 330.51101 * 28 9 7 46 46 H 1.07997 * 120.07736 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1992 0.0000 4 6 3.5807 1.2081 -0.0005 5 6 4.2812 0.0193 0.0051 6 6 3.5911 -1.1937 -0.0008 7 6 4.3352 -2.4712 -0.0010 8 8 3.7852 -3.4950 0.3553 9 7 5.6234 -2.5008 -0.3962 10 6 6.5349 -3.6553 -0.3394 11 6 7.5040 -3.5015 -1.5234 12 1 7.2434 -4.1664 -2.3468 13 6 8.9478 -3.7221 -1.0250 14 6 9.7640 -2.6171 -1.7439 15 6 8.8036 -1.4022 -1.6684 16 1 8.8380 -0.9486 -0.6778 17 7 9.1386 -0.4139 -2.6966 18 6 10.0575 0.5660 -2.4309 19 1 10.5356 0.6100 -1.4635 20 6 10.3753 1.5021 -3.4055 21 7 9.7931 1.4482 -4.5846 22 14 11.6294 2.8383 -3.0432 23 1 12.1346 2.6801 -1.6559 24 1 12.7616 2.7265 -3.9976 25 1 10.9893 4.1705 -3.1884 26 6 7.4114 -2.0117 -1.9365 27 1 7.1163 -1.8988 -2.9798 28 6 6.3937 -1.3847 -0.9691 29 6 2.1951 -1.1954 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6539 2.1325 0.0004 34 1 4.1136 2.1475 -0.0009 35 1 5.3612 0.0275 0.0091 36 1 5.9704 -4.5827 -0.4360 37 1 7.0879 -3.6496 0.5999 38 1 9.0026 -3.5957 0.0562 39 1 9.3051 -4.7105 -1.3140 40 1 9.9626 -2.8920 -2.7798 41 1 10.6932 -2.4119 -1.2124 42 1 8.7094 -0.4536 -3.5657 43 1 10.0149 2.1025 -5.2654 44 1 6.9135 -0.8440 -0.1781 45 1 5.7297 -0.7104 -1.5099 46 1 1.6552 -2.1307 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026186977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:23 Heat of formation + Delta-G solvation = 5.752794 kcal Electronic energy + Delta-G solvation = -26155.306111 eV Core-core repulsion = 22623.665991 eV Total energy + Delta-G solvation = -3531.640120 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.71273 -39.28370 -38.02324 -35.26725 -33.70260 -32.87669 -31.36750 -30.95252 -29.40055 -28.65798 -27.03386 -25.15687 -24.69072 -22.95326 -22.53445 -21.70252 -20.35509 -19.41467 -19.10715 -17.25992 -17.04907 -16.42632 -15.92697 -15.87476 -15.18508 -14.92555 -14.48175 -14.23465 -14.11839 -13.84795 -13.71421 -13.37872 -13.07151 -13.02579 -12.65432 -12.60296 -12.41795 -12.11098 -11.92401 -11.71078 -11.58386 -11.30810 -11.10547 -10.83537 -10.79820 -10.64889 -10.37088 -10.31957 -10.22748 -10.00669 -9.84322 -9.68948 -9.09213 -8.93411 -8.80954 -8.63124 -7.00283 -5.82238 -3.11155 0.79942 1.23948 2.79763 2.98273 3.39191 3.45486 3.47384 3.73586 4.35581 4.53322 4.60266 4.65475 4.75423 4.78922 4.90941 4.97182 5.11454 5.22891 5.26380 5.38331 5.40443 5.45391 5.47862 5.54116 5.60270 5.63101 5.70790 5.78935 5.81212 5.90925 5.94300 5.96322 6.03928 6.08531 6.18757 6.23061 6.28166 6.31479 6.37656 6.41802 6.48603 6.62861 6.75434 6.78769 6.99389 7.54233 7.66026 8.14292 8.36090 9.47647 10.04629 10.38792 11.40218 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.003840 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.270637 B = 7290.328712 C = 9191.156367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.097 4.097 4 C -0.122 4.122 5 C -0.101 4.101 6 C -0.127 4.127 7 C 0.576 3.424 8 O -0.547 6.547 9 N -0.611 5.611 10 C 0.111 3.889 11 C -0.100 4.100 12 H 0.086 0.914 13 C -0.116 4.116 14 C -0.143 4.143 15 C 0.184 3.816 16 H 0.057 0.943 17 N -0.720 5.720 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.904 3.096 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.107 4.107 27 H 0.091 0.909 28 C 0.101 3.899 29 C -0.064 4.064 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.497 -5.273 9.213 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.116 4.116 4 C -0.139 4.139 5 C -0.119 4.119 6 C -0.130 4.130 7 C 0.366 3.634 8 O -0.426 6.426 9 N -0.343 5.343 10 C -0.011 4.011 11 C -0.120 4.120 12 H 0.104 0.896 13 C -0.154 4.154 14 C -0.183 4.183 15 C 0.073 3.927 16 H 0.075 0.925 17 N -0.361 5.361 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.128 4.128 27 H 0.109 0.891 28 C -0.021 4.021 29 C -0.083 4.083 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.162 0.838 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.759 -5.670 9.506 17.658 hybrid contribution 0.726 0.842 -0.268 1.144 sum -13.033 -4.828 9.237 16.688 Atomic orbital electron populations 1.20780 0.90791 1.02931 1.02413 1.19869 0.96343 0.92822 1.00985 1.21259 0.94410 0.97580 0.98313 1.21185 0.94184 0.98349 1.00228 1.22031 1.01540 0.91608 0.96718 1.19840 0.94150 0.92887 1.06106 1.17976 0.79865 0.88444 0.77120 1.90749 1.67666 1.34833 1.49338 1.48504 1.10058 1.13934 1.61840 1.22239 0.90854 0.89573 0.98478 1.22579 0.95314 0.97131 0.96932 0.89600 1.22491 0.93725 0.99355 0.99875 1.23294 0.98884 0.96020 1.00151 1.21240 0.89107 0.88890 0.93444 0.92541 1.42451 1.49436 1.31115 1.13049 1.19267 1.15156 1.04509 0.98157 0.91131 1.24730 1.00387 0.99578 0.96085 1.69658 1.45922 1.37925 1.04436 0.86162 0.80993 0.81938 0.77356 1.20552 1.21899 1.21883 1.22938 0.96737 0.93592 0.99486 0.89065 1.22665 0.93728 0.89280 0.96428 1.21079 0.92468 0.98224 0.96546 0.91118 0.91404 0.91399 0.85712 0.85107 0.83815 0.90547 0.91162 0.91644 0.92129 0.91516 0.92111 0.78172 0.93529 0.90465 0.89729 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.10 -1.06 5.87 -104.68 -0.61 -1.68 16 3 C -0.10 -0.99 9.69 -39.50 -0.38 -1.37 16 4 C -0.12 -1.35 10.03 -39.64 -0.40 -1.75 16 5 C -0.10 -1.27 8.04 -39.18 -0.31 -1.59 16 6 C -0.13 -1.76 5.75 -104.97 -0.60 -2.36 16 7 C 0.58 9.02 7.72 -12.33 -0.10 8.93 16 8 O -0.55 -9.96 16.73 5.31 0.09 -9.88 16 9 N -0.61 -8.75 3.32 -172.70 -0.57 -9.33 16 10 C 0.11 1.45 6.57 -3.25 -0.02 1.43 16 11 C -0.10 -1.30 3.91 -88.53 -0.35 -1.65 16 12 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 13 C -0.12 -1.47 6.35 -24.95 -0.16 -1.63 16 14 C -0.14 -2.32 6.60 -24.56 -0.16 -2.48 16 15 C 0.18 3.29 3.02 -66.15 -0.20 3.09 16 16 H 0.06 1.02 7.15 -51.93 -0.37 0.65 16 17 N -0.72 -16.67 5.23 -51.70 -0.27 -16.94 16 18 C -0.24 -6.27 9.97 -15.06 -0.15 -6.42 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 22 Si 0.90 21.61 29.55 -169.99 -5.02 16.59 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C -0.11 -1.62 3.60 -88.54 -0.32 -1.94 16 27 H 0.09 1.48 7.80 -51.93 -0.40 1.08 16 28 C 0.10 1.42 4.57 -3.25 -0.01 1.40 16 29 C -0.06 -0.81 9.24 -39.19 -0.36 -1.17 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 35 H 0.14 1.77 4.42 -52.49 -0.23 1.54 16 36 H 0.08 1.02 7.87 -51.93 -0.41 0.61 16 37 H 0.07 0.86 7.13 -51.93 -0.37 0.49 16 38 H 0.06 0.77 7.19 -51.93 -0.37 0.40 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.38 9.56 7.59 -40.82 -0.31 9.25 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.08 1.06 6.37 -51.93 -0.33 0.73 16 45 H 0.08 1.20 6.09 -51.93 -0.32 0.88 16 46 H 0.13 1.62 7.78 -52.49 -0.41 1.21 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -30.73 364.13 -10.31 -41.04 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.87 Total: 9.47 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -3.88 Total: -10.10 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.12 Total: -52.61 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.73 -10.31 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026186977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.794 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds