Wall clock time and date at job start Tue Mar 31 2020 10:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38377 * 119.93005 * 2 1 4 4 C 1.38330 * 120.29628 * 180.02562 * 3 2 1 5 5 C 1.37977 * 120.14319 * 359.70518 * 4 3 2 6 6 C 1.39561 * 119.85048 * 0.57379 * 5 4 3 7 7 C 1.47845 * 120.14074 * 179.72498 * 6 5 4 8 8 O 1.21564 * 119.99833 * 159.93784 * 7 6 5 9 9 N 1.34779 * 120.00645 * 339.93522 * 7 6 5 10 10 C 1.47207 * 126.70470 * 173.98804 * 9 7 6 11 11 C 1.53777 * 106.37741 * 148.71869 * 10 9 7 12 12 H 1.08999 * 111.71349 * 257.23590 * 11 10 9 13 13 C 1.54328 * 109.06315 * 132.42896 * 11 10 9 14 14 C 1.55056 * 103.93810 * 222.03355 * 13 11 10 15 15 C 1.55053 * 102.10699 * 40.05750 * 14 13 11 16 16 H 1.08999 * 110.53461 * 78.55699 * 15 14 13 17 17 N 1.46503 * 110.65291 * 201.27150 * 15 14 13 18 18 C 1.36940 * 119.99854 * 271.54852 * 17 15 14 19 19 H 1.07996 * 120.00194 * 0.02562 * 18 17 15 20 20 C 1.38816 * 119.99736 * 179.97438 * 18 17 15 21 21 N 1.31613 * 120.00447 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99461 * 180.02562 * 20 18 17 23 23 H 1.48489 * 109.47810 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46957 * 120.00597 * 22 20 18 25 25 H 1.48505 * 109.47140 * 240.00119 * 22 20 18 26 26 C 1.54325 * 103.93835 * 319.94301 * 15 14 13 27 27 H 1.09004 * 111.68773 * 262.79272 * 26 15 14 28 28 C 1.47218 * 126.69688 * 353.99078 * 9 7 6 29 29 C 1.37934 * 119.92499 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46822 * 269.97827 * 1 2 3 31 31 H 1.08998 * 109.47297 * 29.97351 * 1 2 3 32 32 H 1.08997 * 109.47399 * 149.97675 * 1 2 3 33 33 H 1.08003 * 119.85046 * 0.02562 * 3 2 1 34 34 H 1.08005 * 119.93113 * 179.97438 * 4 3 2 35 35 H 1.08001 * 120.07614 * 180.27404 * 5 4 3 36 36 H 1.08998 * 110.07467 * 29.49442 * 10 9 7 37 37 H 1.09002 * 110.07813 * 267.95097 * 10 9 7 38 38 H 1.08997 * 110.53576 * 340.64524 * 13 11 10 39 39 H 1.09000 * 110.53027 * 103.42029 * 13 11 10 40 40 H 1.09004 * 110.90239 * 281.85747 * 14 13 11 41 41 H 1.08999 * 110.90669 * 158.26069 * 14 13 11 42 42 H 0.97004 * 120.00065 * 91.55610 * 17 15 14 43 43 H 0.96995 * 120.00596 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.06829 * 92.05294 * 28 9 7 45 45 H 1.08996 * 110.07370 * 330.51101 * 28 9 7 46 46 H 1.07997 * 120.07736 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1992 0.0000 4 6 3.5807 1.2081 -0.0005 5 6 4.2812 0.0193 0.0051 6 6 3.5911 -1.1937 -0.0008 7 6 4.3352 -2.4712 -0.0010 8 8 3.7852 -3.4950 0.3553 9 7 5.6234 -2.5008 -0.3962 10 6 6.5349 -3.6553 -0.3394 11 6 7.5040 -3.5015 -1.5234 12 1 7.2434 -4.1664 -2.3468 13 6 8.9478 -3.7221 -1.0250 14 6 9.7640 -2.6171 -1.7439 15 6 8.8036 -1.4022 -1.6684 16 1 8.8380 -0.9486 -0.6778 17 7 9.1386 -0.4139 -2.6966 18 6 10.0575 0.5660 -2.4309 19 1 10.5356 0.6100 -1.4635 20 6 10.3753 1.5021 -3.4055 21 7 9.7931 1.4482 -4.5846 22 14 11.6294 2.8383 -3.0432 23 1 12.1346 2.6801 -1.6559 24 1 12.7616 2.7265 -3.9976 25 1 10.9893 4.1705 -3.1884 26 6 7.4114 -2.0117 -1.9365 27 1 7.1163 -1.8988 -2.9798 28 6 6.3937 -1.3847 -0.9691 29 6 2.1951 -1.1954 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6539 2.1325 0.0004 34 1 4.1136 2.1475 -0.0009 35 1 5.3612 0.0275 0.0091 36 1 5.9704 -4.5827 -0.4360 37 1 7.0879 -3.6496 0.5999 38 1 9.0026 -3.5957 0.0562 39 1 9.3051 -4.7105 -1.3140 40 1 9.9626 -2.8920 -2.7798 41 1 10.6932 -2.4119 -1.2124 42 1 8.7094 -0.4536 -3.5657 43 1 10.0149 2.1025 -5.2654 44 1 6.9135 -0.8440 -0.1781 45 1 5.7297 -0.7104 -1.5099 46 1 1.6552 -2.1307 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026186977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:22 Heat of formation + Delta-G solvation = -10.944495 kcal Electronic energy + Delta-G solvation = -26156.030160 eV Core-core repulsion = 22623.665991 eV Total energy + Delta-G solvation = -3532.364168 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.85212 -40.33883 -39.17240 -36.71892 -35.21689 -33.87806 -32.75380 -32.12794 -30.75071 -29.93984 -27.86864 -26.67866 -25.80416 -24.63358 -23.55019 -22.60834 -21.65290 -20.53060 -20.39006 -19.09464 -18.16796 -17.45334 -17.23016 -16.93092 -16.59278 -15.97490 -15.90795 -15.52526 -15.33367 -14.87387 -14.83423 -14.63066 -14.50226 -14.11006 -13.83399 -13.71147 -13.34222 -13.20327 -13.06948 -12.91972 -12.87047 -12.58766 -12.51219 -12.38404 -12.10193 -11.97963 -11.81717 -11.65967 -11.54515 -11.49409 -11.39300 -11.06792 -10.82431 -10.07242 -9.75931 -9.67798 -8.92919 -7.89868 -5.17043 -0.16152 0.35043 1.49951 1.51215 1.60074 1.69160 1.86842 2.59662 2.78873 3.24074 3.38116 3.53934 3.61980 3.71965 3.84661 3.93516 4.05941 4.10862 4.19452 4.29665 4.35275 4.40859 4.43549 4.49150 4.58573 4.63100 4.64189 4.72698 4.79990 4.83275 4.87002 4.89243 4.96825 5.04043 5.06286 5.13827 5.22878 5.25507 5.35389 5.40278 5.41439 5.45620 5.54472 5.55049 5.63657 5.93511 6.32524 6.36533 6.95909 7.39145 8.15758 8.37875 9.33727 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.003840 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.270637 B = 7290.328712 C = 9191.156367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.093 4.093 4 C -0.127 4.127 5 C -0.111 4.111 6 C -0.148 4.148 7 C 0.571 3.429 8 O -0.580 6.580 9 N -0.610 5.610 10 C 0.110 3.890 11 C -0.090 4.090 12 H 0.094 0.906 13 C -0.102 4.102 14 C -0.139 4.139 15 C 0.178 3.822 16 H 0.058 0.942 17 N -0.732 5.732 18 C -0.231 4.231 19 H 0.077 0.923 20 C -0.074 4.074 21 N -0.969 5.969 22 Si 0.964 3.036 23 H -0.266 1.266 24 H -0.299 1.299 25 H -0.296 1.296 26 C -0.103 4.103 27 H 0.077 0.923 28 C 0.109 3.891 29 C -0.079 4.079 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.372 0.628 43 H 0.249 0.751 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 -4.979 10.666 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.111 4.111 4 C -0.145 4.145 5 C -0.129 4.129 6 C -0.151 4.151 7 C 0.363 3.637 8 O -0.462 6.462 9 N -0.341 5.341 10 C -0.012 4.012 11 C -0.110 4.110 12 H 0.112 0.888 13 C -0.140 4.140 14 C -0.180 4.180 15 C 0.070 3.930 16 H 0.076 0.924 17 N -0.371 5.371 18 C -0.363 4.363 19 H 0.094 0.906 20 C -0.266 4.266 21 N -0.620 5.620 22 Si 0.795 3.205 23 H -0.190 1.190 24 H -0.226 1.226 25 H -0.223 1.223 26 C -0.123 4.123 27 H 0.095 0.905 28 C -0.013 4.013 29 C -0.098 4.098 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.173 0.827 34 H 0.166 0.834 35 H 0.159 0.841 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.204 0.796 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.312 -5.406 11.005 18.846 hybrid contribution 0.850 0.730 -0.681 1.311 sum -13.462 -4.676 10.325 17.598 Atomic orbital electron populations 1.20850 0.88560 1.03939 1.03455 1.20225 0.97986 0.92173 0.99562 1.21645 0.94179 0.98663 0.96600 1.21470 0.94951 0.98403 0.99658 1.22053 1.01544 0.91857 0.97431 1.19845 0.94730 0.92466 1.08094 1.18324 0.80069 0.88758 0.76555 1.90716 1.68339 1.36062 1.51085 1.48528 1.09933 1.14335 1.61269 1.22341 0.90653 0.89153 0.99037 1.22540 0.95756 0.95492 0.97209 0.88799 1.22426 0.92246 0.98988 1.00342 1.23142 0.98727 0.96421 0.99689 1.21466 0.91080 0.88508 0.91992 0.92381 1.42628 1.48962 1.31832 1.13653 1.19625 1.14442 1.04292 0.97913 0.90555 1.25446 1.02805 1.02139 0.96241 1.69805 1.47931 1.38923 1.05366 0.85196 0.78574 0.79206 0.77554 1.18999 1.22641 1.22299 1.22786 0.95312 0.95185 0.99020 0.90496 1.22572 0.93357 0.89098 0.96275 1.21203 0.92183 0.99061 0.97369 0.89942 0.89652 0.91192 0.82669 0.83419 0.84073 0.90628 0.89708 0.90046 0.90002 0.93168 0.92574 0.79571 0.94249 0.89846 0.90025 0.85596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 2 C -0.10 -1.94 5.87 -19.90 -0.12 -2.06 16 3 C -0.09 -1.67 9.69 22.32 0.22 -1.45 16 4 C -0.13 -2.62 10.03 22.23 0.22 -2.40 16 5 C -0.11 -2.74 8.04 22.53 0.18 -2.56 16 6 C -0.15 -4.13 5.75 -20.09 -0.12 -4.25 16 7 C 0.57 18.03 7.72 86.79 0.67 18.70 16 8 O -0.58 -21.45 16.73 -3.92 -0.07 -21.52 16 9 N -0.61 -17.14 3.32 -818.57 -2.72 -19.86 16 10 C 0.11 2.70 6.57 86.51 0.57 3.27 16 11 C -0.09 -2.20 3.91 -9.44 -0.04 -2.24 16 12 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 13 C -0.10 -2.32 6.35 31.75 0.20 -2.12 16 14 C -0.14 -4.36 6.60 32.00 0.21 -4.15 16 15 C 0.18 6.27 3.02 46.14 0.14 6.41 16 16 H 0.06 2.04 7.15 -2.39 -0.02 2.02 16 17 N -0.73 -34.12 5.23 -317.49 -1.66 -35.78 16 18 C -0.23 -12.03 9.97 84.03 0.84 -11.20 16 19 H 0.08 3.83 7.83 -2.91 -0.02 3.80 16 20 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 21 N -0.97 -57.44 13.06 21.65 0.28 -57.15 16 22 Si 0.96 44.62 29.55 68.60 2.03 46.65 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 26 C -0.10 -3.05 3.60 -9.44 -0.03 -3.09 16 27 H 0.08 2.54 7.80 -2.38 -0.02 2.52 16 28 C 0.11 3.01 4.57 86.50 0.40 3.41 16 29 C -0.08 -1.98 9.24 22.52 0.21 -1.77 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 32 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 33 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.14 3.44 4.42 -2.91 -0.01 3.43 16 36 H 0.08 1.91 7.87 -2.39 -0.02 1.89 16 37 H 0.08 1.86 7.13 -2.39 -0.02 1.85 16 38 H 0.08 1.65 7.19 -2.39 -0.02 1.63 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.37 18.98 7.59 -92.71 -0.70 18.28 16 43 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.08 2.22 6.37 -2.39 -0.02 2.20 16 45 H 0.08 2.32 6.09 -2.39 -0.01 2.31 16 46 H 0.13 3.18 7.78 -2.91 -0.02 3.16 16 Total: -1.00 -66.77 364.13 2.88 -63.88 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: 0.29 Total: 33.62 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 4.73 Total: -9.84 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -4.09 Total: -112.79 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.07 Total: -21.52 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -66.77 2.88 -63.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026186977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.939 kcal (2) G-P(sol) polarization free energy of solvation -66.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds