Wall clock time and date at job start Tue Mar 31 2020 10:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38357 * 119.85330 * 2 1 4 4 C 1.37955 * 120.14314 * 180.02562 * 3 2 1 5 5 C 1.39574 * 119.85340 * 359.97438 * 4 3 2 6 6 C 1.47854 * 120.14206 * 179.97438 * 5 4 3 7 7 O 1.21552 * 119.99438 * 206.73731 * 6 5 4 8 8 N 1.34768 * 120.00035 * 26.73586 * 6 5 4 9 9 C 1.49630 * 126.07692 * 356.37536 * 8 6 5 10 10 C 1.51524 * 102.49693 * 154.35298 * 9 8 6 11 11 H 1.08997 * 111.12735 * 287.41101 * 10 9 8 12 12 C 1.51555 * 123.33330 * 151.63168 * 10 9 8 13 13 C 1.56343 * 101.81492 * 207.98748 * 12 10 9 14 14 C 1.56003 * 105.76655 * 25.43531 * 13 12 10 15 15 H 1.09003 * 110.52247 * 125.72325 * 14 13 12 16 16 N 1.46492 * 110.52713 * 248.33338 * 14 13 12 17 17 C 1.36932 * 120.00272 * 271.66176 * 16 14 13 18 18 H 1.08000 * 120.00057 * 359.97438 * 17 16 14 19 19 C 1.38818 * 120.00197 * 180.02562 * 17 16 14 20 20 N 1.31612 * 119.99797 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99918 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47285 * 270.00028 * 21 19 17 23 23 H 1.48508 * 109.47004 * 30.00146 * 21 19 17 24 24 H 1.48496 * 109.46793 * 149.99667 * 21 19 17 25 25 C 1.49709 * 104.11201 * 7.03432 * 14 13 12 26 26 H 1.08989 * 108.54138 * 77.89506 * 25 14 13 27 27 C 1.49293 * 126.07401 * 176.37625 * 8 6 5 28 28 C 1.39566 * 119.71304 * 0.24086 * 5 4 3 29 29 C 1.37961 * 119.85347 * 359.51906 * 28 5 4 30 30 H 1.08995 * 109.46764 * 90.00307 * 1 2 3 31 31 H 1.09004 * 109.46957 * 210.00021 * 1 2 3 32 32 H 1.09000 * 109.47297 * 329.99670 * 1 2 3 33 33 H 1.08003 * 119.92798 * 0.02562 * 3 2 1 34 34 H 1.08005 * 120.07254 * 179.97438 * 4 3 2 35 35 H 1.09000 * 110.79750 * 36.10014 * 9 8 6 36 36 H 1.08996 * 110.79760 * 272.60414 * 9 8 6 37 37 H 1.09001 * 110.96549 * 89.85442 * 12 10 9 38 38 H 1.09008 * 110.99444 * 326.12885 * 12 10 9 39 39 H 1.09000 * 110.18399 * 266.36307 * 13 12 10 40 40 H 1.08998 * 110.25365 * 144.54968 * 13 12 10 41 41 H 0.97009 * 120.00116 * 91.65844 * 16 14 13 42 42 H 0.97006 * 119.99711 * 180.02562 * 20 19 17 43 43 H 1.09005 * 110.39095 * 292.41515 * 27 8 6 44 44 H 1.09005 * 110.39158 * 54.69135 * 27 8 6 45 45 H 1.07999 * 120.07486 * 179.73191 * 28 5 4 46 46 H 1.07999 * 119.92971 * 180.22440 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2070 -0.0005 5 6 4.2762 0.0000 -0.0005 6 6 5.7547 0.0000 -0.0017 7 8 6.3620 -0.9404 -0.4753 8 7 6.4289 1.0426 0.5224 9 6 5.8247 2.2977 1.0688 10 6 6.8755 2.7650 2.0553 11 1 6.8899 2.1327 2.9430 12 6 7.0881 4.2210 2.4182 13 6 8.6042 4.2378 2.7996 14 6 9.2487 3.0451 2.0277 15 1 10.0937 3.3883 1.4307 16 7 9.6722 1.9982 2.9608 17 6 10.9226 2.0419 3.5172 18 1 11.5968 2.8479 3.2678 19 6 11.3241 1.0495 4.4010 20 7 10.5027 0.0670 4.7045 21 14 13.0303 1.1088 5.1595 22 1 13.9843 0.3743 4.2902 23 1 13.4658 2.5227 5.2885 24 1 12.9969 0.4766 6.5027 25 6 8.1491 2.5462 1.1428 26 1 8.0612 3.2164 0.2878 27 6 7.9115 1.1505 0.6609 28 6 3.5753 -1.2070 -0.0051 29 6 2.1957 -1.2000 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.6522 2.1332 0.0004 34 1 4.1117 2.1443 -0.0010 35 1 4.8841 2.0850 1.5768 36 1 5.6811 3.0341 0.2782 37 1 6.4689 4.5053 3.2690 38 1 6.8939 4.8690 1.5634 39 1 8.7233 4.0989 3.8741 40 1 9.0610 5.1776 2.4893 41 1 9.0668 1.2740 3.1846 42 1 10.7832 -0.6262 5.3224 43 1 8.2783 0.4285 1.3906 44 1 8.3954 0.9943 -0.3032 45 1 4.1117 -2.1443 -0.0095 46 1 1.6522 -2.1332 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026407085.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:44 Heat of formation + Delta-G solvation = 25.003143 kcal Electronic energy + Delta-G solvation = -26151.595473 eV Core-core repulsion = 22620.790112 eV Total energy + Delta-G solvation = -3530.805362 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.75628 -39.49276 -38.04799 -35.28650 -33.37827 -33.02673 -31.28839 -30.82641 -29.58043 -28.50230 -27.36202 -25.51616 -23.74247 -23.19366 -22.79593 -21.68052 -20.12268 -19.59591 -18.81311 -17.46815 -17.13795 -16.32805 -15.71222 -15.58189 -15.08671 -14.77992 -14.52754 -14.37352 -14.06220 -13.96853 -13.65022 -13.62016 -13.46713 -12.82295 -12.59635 -12.55223 -12.46264 -12.18811 -11.95418 -11.63598 -11.40242 -11.33367 -11.03815 -10.93590 -10.81734 -10.67649 -10.46916 -10.27938 -10.08301 -9.78146 -9.61765 -9.56683 -9.13813 -8.91030 -8.88200 -8.47725 -6.96981 -5.76623 -3.05858 0.77492 1.19707 2.84866 2.96941 3.43966 3.49082 3.50759 3.70600 4.16249 4.45828 4.56883 4.59265 4.65498 4.78859 4.95815 5.01442 5.10608 5.21675 5.27521 5.28450 5.36610 5.43453 5.47830 5.48395 5.56577 5.63268 5.75179 5.80045 5.82091 5.83802 5.92457 6.00780 6.09953 6.16585 6.19214 6.27763 6.31867 6.32686 6.37608 6.47226 6.54238 6.66061 6.72350 6.81085 7.04652 7.62067 7.71026 8.27466 8.41456 9.52867 10.09430 10.43958 11.45669 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019845 B = 0.003110 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.591157 B = 9002.416893 C = 9668.456686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.069 4.069 3 C -0.130 4.130 4 C -0.096 4.096 5 C -0.128 4.128 6 C 0.570 3.430 7 O -0.539 6.539 8 N -0.616 5.616 9 C 0.109 3.891 10 C -0.126 4.126 11 H 0.095 0.905 12 C -0.098 4.098 13 C -0.145 4.145 14 C 0.197 3.803 15 H 0.056 0.944 16 N -0.718 5.718 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.282 1.282 24 H -0.292 1.292 25 C -0.120 4.120 26 H 0.068 0.932 27 C 0.132 3.868 28 C -0.059 4.059 29 C -0.129 4.129 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.140 0.860 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.134 0.866 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.050 5.786 -9.620 22.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.069 4.069 3 C -0.148 4.148 4 C -0.114 4.114 5 C -0.131 4.131 6 C 0.359 3.641 7 O -0.417 6.417 8 N -0.350 5.350 9 C -0.012 4.012 10 C -0.145 4.145 11 H 0.113 0.887 12 C -0.136 4.136 13 C -0.186 4.186 14 C 0.085 3.915 15 H 0.074 0.926 16 N -0.359 5.359 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.208 1.208 24 H -0.219 1.219 25 C -0.139 4.139 26 H 0.087 0.913 27 C 0.012 3.988 28 C -0.078 4.078 29 C -0.147 4.147 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.151 0.849 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.565 5.225 -9.857 22.522 hybrid contribution 0.752 -0.211 0.597 0.983 sum -18.813 5.015 -9.260 21.560 Atomic orbital electron populations 1.20846 0.91005 1.03027 1.02490 1.20132 0.96255 0.93243 0.97279 1.20986 0.93848 0.97726 1.02232 1.21860 0.94563 0.98001 0.96995 1.19923 0.92851 0.94530 1.05799 1.17955 0.86736 0.81379 0.78014 1.90787 1.69820 1.34725 1.46389 1.49711 1.07951 1.17116 1.60234 1.22123 0.97050 0.85934 0.96136 1.22716 0.94853 0.98664 0.98290 0.88721 1.21819 0.97851 0.93601 1.00365 1.23858 0.92974 0.99215 1.02521 1.20021 0.92675 0.89198 0.89566 0.92646 1.42431 1.15542 1.26589 1.51367 1.19235 0.91081 1.07025 1.19864 0.91124 1.24744 0.98143 0.97479 1.00448 1.69656 1.35404 1.14031 1.38818 0.86218 0.84310 0.77293 0.78509 1.21738 1.20799 1.21860 1.22059 0.97957 0.95731 0.98198 0.91344 1.20937 0.78325 0.97866 1.01710 1.21248 0.93884 0.97619 0.95071 1.21007 0.93768 0.97812 1.02138 0.90929 0.91333 0.91322 0.85548 0.84260 0.89916 0.90896 0.92036 0.92006 0.90542 0.92846 0.78107 0.93488 0.89685 0.91165 0.84860 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.01 36.01 0.36 -0.35 16 2 C -0.07 -0.62 5.89 -104.53 -0.62 -1.23 16 3 C -0.13 -1.19 9.68 -39.64 -0.38 -1.57 16 4 C -0.10 -1.04 7.96 -39.19 -0.31 -1.35 16 5 C -0.13 -1.75 5.73 -104.97 -0.60 -2.35 16 6 C 0.57 9.66 7.67 -12.33 -0.09 9.56 16 7 O -0.54 -11.12 17.01 5.32 0.09 -11.03 16 8 N -0.62 -9.64 3.43 -172.75 -0.59 -10.23 16 9 C 0.11 1.32 4.72 -3.05 -0.01 1.31 16 10 C -0.13 -1.77 3.08 -89.24 -0.28 -2.05 16 11 H 0.09 1.61 7.96 -51.93 -0.41 1.19 16 12 C -0.10 -1.25 6.62 -25.67 -0.17 -1.42 16 13 C -0.14 -2.32 6.74 -23.33 -0.16 -2.48 16 14 C 0.20 3.66 3.45 -67.96 -0.23 3.43 16 15 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 16 N -0.72 -17.19 4.89 -53.45 -0.26 -17.45 16 17 C -0.24 -6.50 9.97 -15.06 -0.15 -6.65 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 21 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 C -0.12 -1.89 2.27 -91.10 -0.21 -2.09 16 26 H 0.07 0.95 7.99 -51.94 -0.42 0.54 16 27 C 0.13 2.31 6.65 -4.19 -0.03 2.28 16 28 C -0.06 -0.75 9.59 -39.19 -0.38 -1.12 16 29 C -0.13 -1.29 9.68 -39.64 -0.38 -1.68 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 34 H 0.14 1.30 4.59 -52.48 -0.24 1.06 16 35 H 0.08 0.91 6.16 -51.93 -0.32 0.59 16 36 H 0.07 0.73 7.45 -51.93 -0.39 0.34 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.08 1.43 7.98 -51.93 -0.41 1.02 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.38 9.92 6.73 -40.82 -0.27 9.65 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.08 1.77 7.17 -51.93 -0.37 1.40 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.13 1.71 7.87 -52.49 -0.41 1.30 16 46 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -32.25 365.61 -10.31 -42.56 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.02 Total: 8.82 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -3.74 Total: -8.20 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.13 Total: -54.93 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.25 -10.31 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026407085.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.564 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds