Wall clock time and date at job start Tue Mar 31 2020 10:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38357 * 119.85330 * 2 1 4 4 C 1.37955 * 120.14314 * 180.02562 * 3 2 1 5 5 C 1.39574 * 119.85340 * 359.97438 * 4 3 2 6 6 C 1.47854 * 120.14206 * 179.97438 * 5 4 3 7 7 O 1.21552 * 119.99438 * 206.73731 * 6 5 4 8 8 N 1.34768 * 120.00035 * 26.73586 * 6 5 4 9 9 C 1.49630 * 126.07692 * 356.37536 * 8 6 5 10 10 C 1.51524 * 102.49693 * 154.35298 * 9 8 6 11 11 H 1.08997 * 111.12735 * 287.41101 * 10 9 8 12 12 C 1.51555 * 123.33330 * 151.63168 * 10 9 8 13 13 C 1.56343 * 101.81492 * 207.98748 * 12 10 9 14 14 C 1.56003 * 105.76655 * 25.43531 * 13 12 10 15 15 H 1.09003 * 110.52247 * 125.72325 * 14 13 12 16 16 N 1.46492 * 110.52713 * 248.33338 * 14 13 12 17 17 C 1.36932 * 120.00272 * 271.66176 * 16 14 13 18 18 H 1.08000 * 120.00057 * 359.97438 * 17 16 14 19 19 C 1.38818 * 120.00197 * 180.02562 * 17 16 14 20 20 N 1.31612 * 119.99797 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99918 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47285 * 270.00028 * 21 19 17 23 23 H 1.48508 * 109.47004 * 30.00146 * 21 19 17 24 24 H 1.48496 * 109.46793 * 149.99667 * 21 19 17 25 25 C 1.49709 * 104.11201 * 7.03432 * 14 13 12 26 26 H 1.08989 * 108.54138 * 77.89506 * 25 14 13 27 27 C 1.49293 * 126.07401 * 176.37625 * 8 6 5 28 28 C 1.39566 * 119.71304 * 0.24086 * 5 4 3 29 29 C 1.37961 * 119.85347 * 359.51906 * 28 5 4 30 30 H 1.08995 * 109.46764 * 90.00307 * 1 2 3 31 31 H 1.09004 * 109.46957 * 210.00021 * 1 2 3 32 32 H 1.09000 * 109.47297 * 329.99670 * 1 2 3 33 33 H 1.08003 * 119.92798 * 0.02562 * 3 2 1 34 34 H 1.08005 * 120.07254 * 179.97438 * 4 3 2 35 35 H 1.09000 * 110.79750 * 36.10014 * 9 8 6 36 36 H 1.08996 * 110.79760 * 272.60414 * 9 8 6 37 37 H 1.09001 * 110.96549 * 89.85442 * 12 10 9 38 38 H 1.09008 * 110.99444 * 326.12885 * 12 10 9 39 39 H 1.09000 * 110.18399 * 266.36307 * 13 12 10 40 40 H 1.08998 * 110.25365 * 144.54968 * 13 12 10 41 41 H 0.97009 * 120.00116 * 91.65844 * 16 14 13 42 42 H 0.97006 * 119.99711 * 180.02562 * 20 19 17 43 43 H 1.09005 * 110.39095 * 292.41515 * 27 8 6 44 44 H 1.09005 * 110.39158 * 54.69135 * 27 8 6 45 45 H 1.07999 * 120.07486 * 179.73191 * 28 5 4 46 46 H 1.07999 * 119.92971 * 180.22440 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2070 -0.0005 5 6 4.2762 0.0000 -0.0005 6 6 5.7547 0.0000 -0.0017 7 8 6.3620 -0.9404 -0.4753 8 7 6.4289 1.0426 0.5224 9 6 5.8247 2.2977 1.0688 10 6 6.8755 2.7650 2.0553 11 1 6.8899 2.1327 2.9430 12 6 7.0881 4.2210 2.4182 13 6 8.6042 4.2378 2.7996 14 6 9.2487 3.0451 2.0277 15 1 10.0937 3.3883 1.4307 16 7 9.6722 1.9982 2.9608 17 6 10.9226 2.0419 3.5172 18 1 11.5968 2.8479 3.2678 19 6 11.3241 1.0495 4.4010 20 7 10.5027 0.0670 4.7045 21 14 13.0303 1.1088 5.1595 22 1 13.9843 0.3743 4.2902 23 1 13.4658 2.5227 5.2885 24 1 12.9969 0.4766 6.5027 25 6 8.1491 2.5462 1.1428 26 1 8.0612 3.2164 0.2878 27 6 7.9115 1.1505 0.6609 28 6 3.5753 -1.2070 -0.0051 29 6 2.1957 -1.2000 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.6522 2.1332 0.0004 34 1 4.1117 2.1443 -0.0010 35 1 4.8841 2.0850 1.5768 36 1 5.6811 3.0341 0.2782 37 1 6.4689 4.5053 3.2690 38 1 6.8939 4.8690 1.5634 39 1 8.7233 4.0989 3.8741 40 1 9.0610 5.1776 2.4893 41 1 9.0668 1.2740 3.1846 42 1 10.7832 -0.6262 5.3224 43 1 8.2783 0.4285 1.3906 44 1 8.3954 0.9943 -0.3032 45 1 4.1117 -2.1443 -0.0095 46 1 1.6522 -2.1332 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026407085.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:43 Heat of formation + Delta-G solvation = 5.524151 kcal Electronic energy + Delta-G solvation = -26152.440146 eV Core-core repulsion = 22620.790112 eV Total energy + Delta-G solvation = -3531.650034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.96344 -40.53139 -39.21240 -36.78424 -35.10002 -33.87632 -32.61245 -32.10048 -30.79964 -29.93594 -28.16864 -26.98422 -25.22196 -24.73871 -23.62543 -22.62808 -21.23108 -20.73985 -20.25879 -19.39149 -18.28318 -17.66090 -16.79666 -16.70697 -16.44296 -16.05792 -15.77238 -15.74025 -15.34199 -14.97505 -14.92158 -14.64090 -14.48199 -14.29739 -13.85505 -13.68154 -13.32808 -13.13040 -12.99386 -12.93457 -12.84411 -12.65884 -12.43820 -12.36313 -12.21487 -12.06934 -11.93862 -11.81156 -11.49801 -11.38025 -11.04040 -10.92698 -10.86956 -9.97384 -9.86671 -9.59546 -8.98093 -7.93399 -5.20973 -0.11817 0.40617 1.45445 1.47320 1.55301 1.64930 1.81373 2.56294 2.80566 2.96263 3.40747 3.43646 3.72466 3.79510 3.94629 3.99914 4.03210 4.05568 4.18463 4.26551 4.38899 4.40928 4.45107 4.48219 4.58913 4.64804 4.71002 4.77767 4.79670 4.85785 4.89910 4.91522 5.00871 5.05889 5.09551 5.17554 5.24390 5.26165 5.33954 5.38599 5.41493 5.45370 5.53733 5.60411 5.70012 5.96774 6.28803 6.39518 6.99031 7.34442 8.12888 8.33931 9.30210 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019845 B = 0.003110 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.591157 B = 9002.416893 C = 9668.456686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.063 4.063 3 C -0.126 4.126 4 C -0.092 4.092 5 C -0.156 4.156 6 C 0.561 3.439 7 O -0.595 6.595 8 N -0.616 5.616 9 C 0.114 3.886 10 C -0.114 4.114 11 H 0.055 0.945 12 C -0.081 4.081 13 C -0.138 4.138 14 C 0.183 3.817 15 H 0.052 0.948 16 N -0.732 5.732 17 C -0.232 4.232 18 H 0.079 0.921 19 C -0.081 4.081 20 N -0.973 5.973 21 Si 0.970 3.030 22 H -0.292 1.292 23 H -0.266 1.266 24 H -0.299 1.299 25 C -0.121 4.121 26 H 0.104 0.896 27 C 0.135 3.865 28 C -0.082 4.082 29 C -0.132 4.132 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.370 0.630 42 H 0.248 0.752 43 H 0.035 0.965 44 H 0.062 0.938 45 H 0.113 0.887 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.102 9.445 -10.636 27.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.110 4.110 5 C -0.159 4.159 6 C 0.353 3.647 7 O -0.477 6.477 8 N -0.348 5.348 9 C -0.006 4.006 10 C -0.133 4.133 11 H 0.073 0.927 12 C -0.119 4.119 13 C -0.179 4.179 14 C 0.074 3.926 15 H 0.070 0.930 16 N -0.372 5.372 17 C -0.364 4.364 18 H 0.097 0.903 19 C -0.272 4.272 20 N -0.624 5.624 21 Si 0.799 3.201 22 H -0.219 1.219 23 H -0.190 1.190 24 H -0.226 1.226 25 C -0.140 4.140 26 H 0.122 0.878 27 C 0.013 3.987 28 C -0.101 4.101 29 C -0.150 4.150 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.180 0.820 34 H 0.176 0.824 35 H 0.119 0.881 36 H 0.133 0.867 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.062 0.938 40 H 0.095 0.905 41 H 0.202 0.798 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.081 0.919 45 H 0.131 0.869 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -22.638 8.977 -10.890 26.677 hybrid contribution 1.630 -1.338 0.851 2.274 sum -21.008 7.640 -10.038 24.504 Atomic orbital electron populations 1.20930 0.88430 1.04266 1.03630 1.20588 0.98098 0.92679 0.94921 1.21413 0.93117 0.99244 1.00536 1.22044 0.95494 0.97239 0.96227 1.19779 0.90578 0.96349 1.09190 1.18668 0.88355 0.80659 0.77060 1.90736 1.71237 1.36760 1.49010 1.49785 1.07061 1.18269 1.59726 1.22410 0.96636 0.84825 0.96733 1.22639 0.94507 0.99314 0.96835 0.92662 1.21782 0.94949 0.92696 1.02485 1.23649 0.95843 0.98455 0.99906 1.20380 0.93771 0.89101 0.89326 0.93043 1.42632 1.14560 1.27729 1.52237 1.19661 0.92109 1.06242 1.18410 0.90328 1.25542 1.01822 0.97780 1.02091 1.69835 1.37320 1.15092 1.40185 0.85185 0.80070 0.77817 0.76992 1.21928 1.19031 1.22613 1.21926 0.97848 0.94920 0.99354 0.87756 1.20709 0.80058 0.97992 0.99911 1.21274 0.95291 0.96819 0.96709 1.21248 0.92541 0.99602 1.01605 0.89641 0.90616 0.89682 0.81955 0.82411 0.88129 0.86722 0.90551 0.87998 0.93833 0.90534 0.79776 0.94366 0.94608 0.91945 0.86893 0.83538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.01 71.24 0.71 -0.19 16 2 C -0.06 -0.91 5.89 -19.81 -0.12 -1.03 16 3 C -0.13 -1.76 9.68 22.23 0.22 -1.54 16 4 C -0.09 -1.73 7.96 22.53 0.18 -1.55 16 5 C -0.16 -4.28 5.73 -20.09 -0.12 -4.40 16 6 C 0.56 19.97 7.67 86.79 0.67 20.64 16 7 O -0.59 -26.73 17.01 -3.88 -0.07 -26.79 16 8 N -0.62 -19.53 3.43 -818.75 -2.81 -22.33 16 9 C 0.11 2.44 4.72 85.29 0.40 2.84 16 10 C -0.11 -3.00 3.08 -9.90 -0.03 -3.03 16 11 H 0.05 1.91 7.96 -2.39 -0.02 1.89 16 12 C -0.08 -1.74 6.62 31.28 0.21 -1.53 16 13 C -0.14 -4.17 6.74 32.80 0.22 -3.95 16 14 C 0.18 6.79 3.45 44.98 0.16 6.94 16 15 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 16 N -0.73 -36.50 4.89 -323.02 -1.58 -38.08 16 17 C -0.23 -12.86 9.97 84.04 0.84 -12.02 16 18 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 19 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 20 N -0.97 -61.52 13.06 21.65 0.28 -61.24 16 21 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 22 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 25 C -0.12 -3.72 2.27 -11.10 -0.03 -3.75 16 26 H 0.10 2.54 7.99 -2.39 -0.02 2.52 16 27 C 0.14 4.98 6.65 84.73 0.56 5.54 16 28 C -0.08 -2.14 9.59 22.52 0.22 -1.92 16 29 C -0.13 -2.47 9.68 22.23 0.22 -2.25 16 30 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.52 8.08 -2.38 -0.02 0.50 16 32 H 0.08 0.43 8.08 -2.39 -0.02 0.41 16 33 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.16 2.24 4.59 -2.91 -0.01 2.23 16 35 H 0.10 1.87 6.16 -2.39 -0.01 1.85 16 36 H 0.12 1.62 7.45 -2.39 -0.02 1.60 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.04 1.61 7.98 -2.39 -0.02 1.59 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.37 20.44 6.73 -92.70 -0.62 19.82 16 42 H 0.25 15.31 8.31 -92.70 -0.77 14.54 16 43 H 0.04 1.65 7.17 -2.38 -0.02 1.63 16 44 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 45 H 0.11 3.26 7.87 -2.91 -0.02 3.24 16 46 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -77.82 365.61 2.99 -74.83 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.36 Total: 29.87 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 4.77 Total: -5.45 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -4.10 Total: -121.65 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.07 Total: -26.79 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -77.82 2.99 -74.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026407085.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.357 kcal (2) G-P(sol) polarization free energy of solvation -77.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds