Wall clock time and date at job start Tue Mar 31 2020 10:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38361 * 119.85356 * 2 1 4 4 C 1.37955 * 120.14233 * 179.97438 * 3 2 1 5 5 C 1.39568 * 119.85634 * 0.02562 * 4 3 2 6 6 C 1.47849 * 120.14635 * 179.97438 * 5 4 3 7 7 O 1.21553 * 119.99583 * 200.01664 * 6 5 4 8 8 N 1.34776 * 119.99991 * 20.00623 * 6 5 4 9 9 C 1.47209 * 126.70132 * 5.95732 * 8 6 5 10 10 C 1.53781 * 106.37833 * 148.71385 * 9 8 6 11 11 H 1.08997 * 112.38876 * 256.84688 * 10 9 8 12 12 C 1.54322 * 109.06231 * 132.43153 * 10 9 8 13 13 C 1.55060 * 104.06378 * 221.96594 * 12 10 9 14 14 C 1.54577 * 102.33336 * 39.41958 * 13 12 10 15 15 H 1.08998 * 111.42051 * 201.72345 * 14 13 12 16 16 N 1.46498 * 109.33708 * 79.31521 * 14 13 12 17 17 C 1.36933 * 120.00164 * 126.02106 * 16 14 13 18 18 H 1.08001 * 119.99802 * 0.02562 * 17 16 14 19 19 C 1.38818 * 120.00002 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00024 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99743 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47005 * 60.00453 * 21 19 17 23 23 H 1.48496 * 109.46902 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47114 * 300.00338 * 21 19 17 25 25 C 1.54324 * 104.38316 * 321.03465 * 14 13 12 26 26 H 1.09003 * 111.68953 * 261.64443 * 25 14 13 27 27 C 1.47214 * 126.70127 * 185.95491 * 8 6 5 28 28 C 1.39583 * 119.71187 * 0.25277 * 5 4 3 29 29 C 1.37958 * 119.84829 * 359.47124 * 28 5 4 30 30 H 1.09006 * 109.47336 * 90.00269 * 1 2 3 31 31 H 1.09003 * 109.47455 * 209.99831 * 1 2 3 32 32 H 1.09005 * 109.47332 * 330.00285 * 1 2 3 33 33 H 1.08003 * 119.92425 * 359.97438 * 3 2 1 34 34 H 1.08006 * 120.06973 * 180.02562 * 4 3 2 35 35 H 1.09008 * 110.07346 * 29.48988 * 9 8 6 36 36 H 1.08994 * 110.07758 * 267.94539 * 9 8 6 37 37 H 1.09001 * 110.53243 * 340.64586 * 12 10 9 38 38 H 1.08997 * 110.53810 * 103.28328 * 12 10 9 39 39 H 1.09000 * 110.90196 * 158.32768 * 13 12 10 40 40 H 1.08997 * 110.90044 * 281.92595 * 13 12 10 41 41 H 0.97002 * 119.99679 * 306.02451 * 16 14 13 42 42 H 0.96992 * 119.99480 * 179.97438 * 20 19 17 43 43 H 1.08996 * 110.07185 * 92.05160 * 27 8 6 44 44 H 1.09004 * 110.12276 * 330.53766 * 27 8 6 45 45 H 1.08003 * 120.07155 * 179.72594 * 28 5 4 46 46 H 1.07997 * 119.92699 * 180.27160 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2070 0.0005 5 6 4.2761 0.0000 0.0005 6 6 5.7546 0.0000 0.0005 7 8 6.3623 -0.9891 -0.3598 8 7 6.4285 1.0967 0.3999 9 6 5.8518 2.3223 0.9764 10 6 6.9053 2.8825 1.9466 11 1 6.6586 2.6809 2.9889 12 6 7.0799 4.3931 1.6837 13 6 8.6126 4.6146 1.7620 14 6 9.1647 3.3542 1.0578 15 1 10.1962 3.1554 1.3486 16 7 9.0655 3.5267 -0.3936 17 6 10.1754 3.3670 -1.1795 18 1 11.1238 3.1134 -0.7295 19 6 10.0812 3.5300 -2.5549 20 7 8.9252 3.8385 -3.1034 21 14 11.5951 3.3114 -3.6271 22 1 12.1219 1.9325 -3.4645 23 1 11.2317 3.5384 -5.0489 24 1 12.6354 4.2899 -3.2202 25 6 8.2394 2.2138 1.5319 26 1 8.6822 1.6510 2.3538 27 6 7.8851 1.3030 0.3447 28 6 3.5752 -1.2070 -0.0054 29 6 2.1957 -1.2000 -0.0001 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6521 2.1332 -0.0004 34 1 4.1117 2.1444 0.0010 35 1 4.9345 2.0862 1.5159 36 1 5.6469 3.0463 0.1879 37 1 6.7059 4.6546 0.6938 38 1 6.5697 4.9761 2.4504 39 1 8.9016 5.5237 1.2347 40 1 8.9487 4.6441 2.7985 41 1 8.2135 3.7542 -0.7978 42 1 8.8596 3.9527 -4.0644 43 1 8.1591 1.7868 -0.5928 44 1 8.4028 0.3483 0.4379 45 1 4.1117 -2.1444 -0.0099 46 1 1.6521 -2.1332 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026407087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:52 Heat of formation + Delta-G solvation = 14.269510 kcal Electronic energy + Delta-G solvation = -26619.109073 eV Core-core repulsion = 23087.838266 eV Total energy + Delta-G solvation = -3531.270807 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.51498 -39.23699 -37.85601 -35.07474 -33.38225 -32.92688 -31.16883 -30.85439 -29.34051 -28.37787 -27.30306 -25.19239 -23.84372 -23.32992 -22.65420 -21.53489 -19.96441 -19.34430 -18.69119 -17.51990 -17.08755 -16.06983 -15.70369 -15.47863 -14.99371 -14.69678 -14.50277 -14.27802 -13.99978 -13.76748 -13.59519 -13.45955 -13.19000 -12.76061 -12.61918 -12.43678 -12.30202 -12.19327 -11.90756 -11.51551 -11.24093 -11.07734 -10.91888 -10.78262 -10.62538 -10.51841 -10.27418 -10.23820 -10.09846 -9.98371 -9.61718 -9.52440 -9.03407 -8.98823 -8.76279 -8.17056 -6.97982 -5.81812 -3.11072 0.87957 1.31104 3.01980 3.33946 3.43554 3.48912 3.49028 3.85376 4.55039 4.56858 4.65613 4.70453 4.78023 4.92339 5.00733 5.05626 5.13966 5.32017 5.35428 5.46057 5.53184 5.53837 5.56872 5.64394 5.68156 5.78387 5.84698 5.88301 5.92811 6.00021 6.05462 6.08696 6.16825 6.24028 6.31870 6.33459 6.42515 6.47151 6.52750 6.66668 6.70404 6.82446 6.84801 6.93315 7.15727 7.67676 7.92421 8.36171 8.49060 9.48089 10.02437 10.37073 11.39823 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015057 B = 0.003789 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.120203 B = 7388.745974 C = 8140.030778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 C -0.130 4.130 4 C -0.094 4.094 5 C -0.128 4.128 6 C 0.569 3.431 7 O -0.545 6.545 8 N -0.604 5.604 9 C 0.100 3.900 10 C -0.101 4.101 11 H 0.080 0.920 12 C -0.113 4.113 13 C -0.139 4.139 14 C 0.177 3.823 15 H 0.069 0.931 16 N -0.709 5.709 17 C -0.249 4.249 18 H 0.072 0.928 19 C -0.008 4.008 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.122 4.122 26 H 0.074 0.926 27 C 0.096 3.904 28 C -0.060 4.060 29 C -0.132 4.132 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.143 0.857 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.385 0.615 42 H 0.257 0.743 43 H 0.127 0.873 44 H 0.063 0.937 45 H 0.133 0.867 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.259 -3.008 11.343 19.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.070 4.070 3 C -0.148 4.148 4 C -0.112 4.112 5 C -0.131 4.131 6 C 0.358 3.642 7 O -0.424 6.424 8 N -0.335 5.335 9 C -0.023 4.023 10 C -0.120 4.120 11 H 0.098 0.902 12 C -0.151 4.151 13 C -0.178 4.178 14 C 0.065 3.935 15 H 0.087 0.913 16 N -0.348 5.348 17 C -0.380 4.380 18 H 0.090 0.910 19 C -0.204 4.204 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.144 4.144 26 H 0.092 0.908 27 C -0.025 4.025 28 C -0.079 4.079 29 C -0.150 4.150 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.144 0.856 44 H 0.082 0.918 45 H 0.151 0.849 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.787 -3.627 10.987 18.776 hybrid contribution 0.473 -0.021 -0.762 0.897 sum -14.314 -3.648 10.225 17.965 Atomic orbital electron populations 1.20838 0.91081 1.02851 1.02524 1.20119 0.96182 0.93264 0.97443 1.21005 0.93903 0.97708 1.02202 1.21988 0.94581 0.98365 0.96310 1.19979 0.93073 0.94423 1.05620 1.17886 0.86620 0.81802 0.77877 1.90755 1.69836 1.32726 1.49076 1.48431 1.09340 1.14721 1.61023 1.22602 0.96822 0.86743 0.96140 1.22589 0.95114 0.96082 0.98221 0.90172 1.22486 0.97477 0.93770 1.01371 1.23035 0.94746 1.00444 0.99591 1.21006 0.96385 0.90580 0.85563 0.91301 1.42486 1.10207 1.82192 0.99940 1.19259 0.89291 1.40778 0.88675 0.91022 1.24732 0.96836 1.02128 0.96751 1.69631 1.23149 1.54153 1.10759 0.86289 0.82319 0.77954 0.79756 1.21156 1.21738 1.21284 1.23179 0.96084 0.98099 0.97009 0.90753 1.22691 0.77853 0.99474 1.02515 1.21238 0.93813 0.97632 0.95255 1.20977 0.93782 0.97704 1.02553 0.90914 0.91456 0.91375 0.85546 0.83938 0.90750 0.90683 0.91054 0.92467 0.91033 0.92555 0.77972 0.93363 0.85602 0.91843 0.84944 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.00 36.00 0.36 -0.46 16 2 C -0.07 -0.71 5.89 -104.53 -0.62 -1.33 16 3 C -0.13 -1.41 9.68 -39.64 -0.38 -1.79 16 4 C -0.09 -1.23 8.04 -39.19 -0.31 -1.54 16 5 C -0.13 -1.97 5.75 -104.97 -0.60 -2.57 16 6 C 0.57 10.76 7.72 -12.33 -0.10 10.67 16 7 O -0.54 -12.21 16.73 5.32 0.09 -12.13 16 8 N -0.60 -10.75 3.32 -172.70 -0.57 -11.32 16 9 C 0.10 1.42 4.57 -3.25 -0.01 1.41 16 10 C -0.10 -1.38 3.91 -88.53 -0.35 -1.73 16 11 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 12 C -0.11 -1.55 6.13 -24.95 -0.15 -1.70 16 13 C -0.14 -2.13 6.54 -24.81 -0.16 -2.29 16 14 C 0.18 3.22 3.58 -66.41 -0.24 2.98 16 15 H 0.07 1.28 7.84 -51.93 -0.41 0.87 16 16 N -0.71 -16.25 2.90 -51.95 -0.15 -16.40 16 17 C -0.25 -6.54 9.75 -15.06 -0.15 -6.69 16 18 H 0.07 1.84 7.68 -52.49 -0.40 1.43 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.93 -27.11 13.06 55.49 0.72 -26.39 16 21 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 C -0.12 -2.00 3.86 -88.53 -0.34 -2.34 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 27 C 0.10 1.89 6.44 -3.25 -0.02 1.87 16 28 C -0.06 -0.83 9.59 -39.18 -0.38 -1.20 16 29 C -0.13 -1.45 9.68 -39.64 -0.38 -1.84 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 34 H 0.14 1.77 4.41 -52.48 -0.23 1.53 16 35 H 0.07 0.90 6.08 -51.92 -0.32 0.58 16 36 H 0.08 1.09 6.37 -51.93 -0.33 0.76 16 37 H 0.07 1.07 6.88 -51.93 -0.36 0.72 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.39 9.45 7.13 -40.82 -0.29 9.16 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.13 2.98 5.34 -51.93 -0.28 2.70 16 44 H 0.06 1.32 7.87 -51.93 -0.41 0.91 16 45 H 0.13 1.81 7.78 -52.48 -0.41 1.40 16 46 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -31.18 360.31 -10.22 -41.40 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -6.79 Total: 11.16 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -3.93 Total: -8.88 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.00 Total: -54.11 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.18 -10.22 -41.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026407087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.673 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds