Wall clock time and date at job start Tue Mar 31 2020 11:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32689 * 1 3 3 C 1.47667 * 120.00160 * 2 1 4 4 C 1.39710 * 119.99541 * 179.97438 * 3 2 1 5 5 C 1.37605 * 120.00128 * 180.02562 * 4 3 2 6 6 C 1.39751 * 119.99628 * 359.97438 * 5 4 3 7 7 C 1.47686 * 120.00181 * 179.97438 * 6 5 4 8 8 O 1.21573 * 120.00089 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99736 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99969 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46691 * 274.72265 * 10 9 7 12 12 C 1.53004 * 109.47406 * 299.99403 * 11 10 9 13 13 C 1.52993 * 109.47226 * 300.00825 * 12 11 10 14 14 N 1.46495 * 109.47228 * 179.97438 * 13 12 11 15 15 C 1.36947 * 119.99958 * 84.99549 * 14 13 12 16 16 H 1.07994 * 120.00021 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99731 * 180.02562 * 15 14 13 18 18 N 1.31615 * 119.99426 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00329 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.46984 * 89.99881 * 19 17 15 21 21 H 1.48501 * 109.47117 * 210.00297 * 19 17 15 22 22 H 1.48500 * 109.47068 * 330.00130 * 19 17 15 23 23 C 1.52997 * 109.47602 * 59.99295 * 13 12 11 24 24 C 1.52993 * 109.47100 * 154.71955 * 10 9 7 25 25 C 1.39740 * 119.98875 * 0.24481 * 6 5 4 26 26 C 1.37593 * 120.00177 * 359.51475 * 25 6 5 27 27 H 1.08001 * 119.99513 * 0.02562 * 1 2 3 28 28 H 1.07992 * 119.99768 * 180.02562 * 1 2 3 29 29 H 1.07996 * 119.99976 * 179.97438 * 2 1 3 30 30 H 1.07991 * 119.99880 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.00397 * 179.97438 * 5 4 3 32 32 H 0.97005 * 120.00161 * 359.71789 * 9 7 6 33 33 H 1.08999 * 109.47194 * 34.71875 * 10 9 7 34 34 H 1.08995 * 109.47574 * 60.00208 * 11 10 9 35 35 H 1.09002 * 109.46832 * 179.97438 * 11 10 9 36 36 H 1.08996 * 109.47149 * 180.02562 * 12 11 10 37 37 H 1.09002 * 109.46655 * 60.00467 * 12 11 10 38 38 H 1.09002 * 109.47012 * 299.99424 * 13 12 11 39 39 H 0.97004 * 120.00120 * 264.99752 * 14 13 12 40 40 H 0.97004 * 119.99574 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.47574 * 179.97438 * 23 13 12 42 42 H 1.09002 * 109.46832 * 60.00019 * 23 13 12 43 43 H 1.09002 * 109.47012 * 179.97438 * 24 10 9 44 44 H 1.08996 * 109.47599 * 300.00068 * 24 10 9 45 45 H 1.08002 * 119.99635 * 179.72658 * 25 6 5 46 46 H 1.08000 * 120.00424 * 180.20777 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3269 0.0000 0.0000 3 6 2.0653 1.2788 0.0000 4 6 3.4624 1.2787 0.0005 5 6 4.1505 2.4703 0.0011 6 6 3.4519 3.6806 0.0005 7 6 4.1903 4.9596 0.0017 8 8 5.4061 4.9595 0.0036 9 7 3.5165 6.1267 0.0006 10 6 4.2490 7.3955 0.0023 11 6 4.6040 7.7774 1.4407 12 6 3.3206 7.9284 2.2599 13 6 2.4472 9.0224 1.6425 14 7 1.2181 9.1666 2.4265 15 6 1.2049 9.9663 3.5381 16 1 2.1005 10.4909 3.8366 17 6 0.0404 10.1025 4.2813 18 7 0.0277 10.8715 5.3494 19 14 -1.5088 9.1956 3.7647 20 1 -1.5429 7.8624 4.4178 21 1 -2.7014 9.9790 4.1760 22 1 -1.5136 9.0244 2.2896 23 6 2.0922 8.6405 0.2041 24 6 3.3756 8.4894 -0.6151 25 6 2.0545 3.6804 0.0046 26 6 1.3666 2.4888 -0.0009 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8669 -0.9353 0.0004 30 1 4.0022 0.3434 0.0005 31 1 5.2305 2.4702 0.0019 32 1 2.5464 6.1267 -0.0050 33 1 5.1633 7.2880 -0.5812 34 1 5.2262 6.9981 1.8806 35 1 5.1494 8.7211 1.4420 36 1 3.5735 8.2009 3.2845 37 1 2.7756 6.9845 2.2586 38 1 2.9922 9.9663 1.6438 39 1 0.4136 8.6956 2.1583 40 1 -0.7862 10.9670 5.8685 41 1 1.4696 9.4196 -0.2356 42 1 1.5472 7.6965 0.2028 43 1 3.9204 9.4335 -0.6134 44 1 3.1226 8.2174 -1.6398 45 1 1.5144 4.6157 0.0087 46 1 0.2866 2.4886 -0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026565809.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:43 Heat of formation + Delta-G solvation = 10.737786 kcal Electronic energy + Delta-G solvation = -25757.050362 eV Core-core repulsion = 22225.626408 eV Total energy + Delta-G solvation = -3531.423954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.55214 -39.19043 -37.84210 -34.83940 -34.51701 -32.88586 -31.48228 -30.90499 -30.53369 -29.81258 -27.96669 -24.64708 -23.37034 -22.97161 -22.35416 -21.46561 -20.82740 -19.95951 -19.03637 -18.31279 -17.52258 -16.65092 -15.70561 -15.52087 -15.23472 -15.04414 -15.01515 -14.48322 -14.21713 -13.85083 -13.71282 -13.60818 -13.42811 -13.03268 -12.92368 -12.65011 -12.56669 -12.31561 -11.96247 -11.84065 -11.64425 -11.29429 -11.19768 -10.98555 -10.93218 -10.69579 -10.48430 -10.25766 -10.07448 -9.95815 -9.79141 -9.58831 -9.31134 -9.03085 -8.87886 -8.54558 -7.27535 -5.77918 -3.13275 0.27824 1.10715 1.93446 2.92709 3.13745 3.34281 3.36715 3.42957 3.72666 4.31910 4.39295 4.57209 4.57451 4.66798 4.83169 4.88052 4.96040 4.99459 5.02898 5.11286 5.35020 5.43452 5.46777 5.49819 5.55011 5.62623 5.69605 5.77712 5.80458 5.87892 5.91346 5.94442 5.96728 6.07020 6.14714 6.18416 6.25572 6.37061 6.38311 6.40352 6.51981 6.58875 6.68225 6.88204 7.02815 7.48761 7.99082 8.17974 8.41378 9.19937 9.92456 10.12120 11.40647 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011582 B = 0.003632 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.011338 B = 7708.432654 C = 9481.348977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.125 4.125 3 C -0.037 4.037 4 C -0.119 4.119 5 C -0.059 4.059 6 C -0.133 4.133 7 C 0.557 3.443 8 O -0.542 6.542 9 N -0.713 5.713 10 C 0.147 3.853 11 C -0.128 4.128 12 C -0.132 4.132 13 C 0.182 3.818 14 N -0.749 5.749 15 C -0.241 4.241 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.935 5.935 19 Si 0.884 3.116 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.278 1.278 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.082 4.082 26 C -0.123 4.123 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.137 0.863 32 H 0.399 0.601 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.359 0.641 40 H 0.259 0.741 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.128 0.872 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.342 -19.188 -15.595 25.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.038 4.038 4 C -0.137 4.137 5 C -0.078 4.078 6 C -0.136 4.136 7 C 0.345 3.655 8 O -0.420 6.420 9 N -0.365 5.365 10 C 0.043 3.957 11 C -0.168 4.168 12 C -0.173 4.173 13 C 0.073 3.927 14 N -0.391 5.391 15 C -0.371 4.371 16 H 0.108 0.892 17 C -0.192 4.192 18 N -0.583 5.583 19 Si 0.715 3.285 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.204 1.204 23 C -0.167 4.167 24 C -0.161 4.161 25 C -0.100 4.100 26 C -0.140 4.140 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.138 0.862 30 H 0.148 0.852 31 H 0.155 0.845 32 H 0.236 0.764 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.192 0.808 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.146 0.854 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.257 -18.958 -15.396 24.981 hybrid contribution -1.766 -0.651 -0.078 1.884 sum 3.491 -19.609 -15.474 25.222 Atomic orbital electron populations 1.24494 0.95698 1.02569 0.97974 1.21837 0.95282 0.95726 1.01411 1.19322 0.93434 0.93255 0.97750 1.21232 0.93150 0.98199 1.01119 1.21209 1.00848 0.90714 0.94991 1.20076 0.93641 0.93893 1.05948 1.18215 0.87246 0.83783 0.76292 1.90756 1.13369 1.87656 1.50250 1.46076 1.10496 1.05540 1.74365 1.21020 0.95165 0.82083 0.97416 1.21923 0.98752 1.01449 0.94634 1.22178 0.95102 1.00093 0.99914 1.20204 0.88096 0.96230 0.88172 1.42788 1.08140 1.57031 1.31170 1.19084 0.98097 1.19705 1.00221 0.89220 1.24677 0.97519 0.99711 0.97341 1.69701 1.27791 1.42263 1.18505 0.86551 0.84401 0.79676 0.77890 1.21190 1.21797 1.20397 1.21860 0.96656 1.01123 0.97034 1.21794 0.96914 0.98648 0.98711 1.21261 0.93076 0.98567 0.97142 1.21238 1.00243 0.91466 1.01093 0.87807 0.87549 0.86161 0.85172 0.84472 0.76400 0.89663 0.92080 0.91116 0.91590 0.93003 0.92592 0.80847 0.93092 0.91301 0.92985 0.90028 0.91682 0.85430 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 14.15 28.84 0.41 -0.67 16 2 C -0.12 -0.90 9.90 -37.62 -0.37 -1.28 16 3 C -0.04 -0.34 5.87 -104.94 -0.62 -0.96 16 4 C -0.12 -1.09 9.76 -39.26 -0.38 -1.47 16 5 C -0.06 -0.64 9.58 -39.25 -0.38 -1.02 16 6 C -0.13 -1.58 5.88 -104.91 -0.62 -2.19 16 7 C 0.56 7.68 7.73 -12.40 -0.10 7.58 16 8 O -0.54 -9.06 15.99 5.30 0.08 -8.97 16 9 N -0.71 -8.75 4.18 -54.80 -0.23 -8.98 16 10 C 0.15 1.85 2.79 -67.93 -0.19 1.66 16 11 C -0.13 -1.84 5.61 -26.73 -0.15 -1.99 16 12 C -0.13 -2.26 5.34 -26.73 -0.14 -2.40 16 13 C 0.18 3.28 2.77 -67.94 -0.19 3.10 16 14 N -0.75 -17.05 4.92 -53.43 -0.26 -17.31 16 15 C -0.24 -6.68 10.41 -15.05 -0.16 -6.83 16 16 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 17 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 18 N -0.93 -29.24 13.97 55.49 0.78 -28.46 16 19 Si 0.88 21.77 27.74 -169.99 -4.71 17.06 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 23 C -0.13 -1.78 5.22 -26.73 -0.14 -1.92 16 24 C -0.12 -1.39 5.61 -26.73 -0.15 -1.54 16 25 C -0.08 -0.83 9.52 -39.26 -0.37 -1.21 16 26 C -0.12 -1.14 9.38 -39.26 -0.37 -1.51 16 27 H 0.10 0.62 6.02 -52.49 -0.32 0.31 16 28 H 0.11 0.50 8.06 -52.49 -0.42 0.08 16 29 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 30 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.14 1.48 7.64 -52.49 -0.40 1.08 16 32 H 0.40 4.34 4.88 -40.82 -0.20 4.14 16 33 H 0.09 1.10 7.57 -51.93 -0.39 0.71 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.05 0.89 7.60 -51.93 -0.39 0.49 16 38 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 39 H 0.36 7.99 5.66 -40.82 -0.23 7.76 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.67 6.51 -51.93 -0.34 0.33 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.13 1.11 6.38 -52.49 -0.34 0.77 16 46 H 0.13 0.97 6.15 -52.49 -0.32 0.65 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -33.25 368.43 -9.55 -42.80 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -6.75 Total: 10.98 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -4.01 Total: -12.66 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.28 Total: -54.75 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.08 Total: -8.97 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.25 -9.55 -42.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026565809.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.535 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds