Wall clock time and date at job start Tue Mar 31 2020 11:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32689 * 1 3 3 C 1.47667 * 120.00160 * 2 1 4 4 C 1.39710 * 119.99541 * 179.97438 * 3 2 1 5 5 C 1.37605 * 120.00128 * 180.02562 * 4 3 2 6 6 C 1.39751 * 119.99628 * 359.97438 * 5 4 3 7 7 C 1.47686 * 120.00181 * 179.97438 * 6 5 4 8 8 O 1.21573 * 120.00089 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99736 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99969 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46691 * 274.72265 * 10 9 7 12 12 C 1.53004 * 109.47406 * 299.99403 * 11 10 9 13 13 C 1.52993 * 109.47226 * 300.00825 * 12 11 10 14 14 N 1.46495 * 109.47228 * 179.97438 * 13 12 11 15 15 C 1.36947 * 119.99958 * 84.99549 * 14 13 12 16 16 H 1.07994 * 120.00021 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99731 * 180.02562 * 15 14 13 18 18 N 1.31615 * 119.99426 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00329 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.46984 * 89.99881 * 19 17 15 21 21 H 1.48501 * 109.47117 * 210.00297 * 19 17 15 22 22 H 1.48500 * 109.47068 * 330.00130 * 19 17 15 23 23 C 1.52997 * 109.47602 * 59.99295 * 13 12 11 24 24 C 1.52993 * 109.47100 * 154.71955 * 10 9 7 25 25 C 1.39740 * 119.98875 * 0.24481 * 6 5 4 26 26 C 1.37593 * 120.00177 * 359.51475 * 25 6 5 27 27 H 1.08001 * 119.99513 * 0.02562 * 1 2 3 28 28 H 1.07992 * 119.99768 * 180.02562 * 1 2 3 29 29 H 1.07996 * 119.99976 * 179.97438 * 2 1 3 30 30 H 1.07991 * 119.99880 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.00397 * 179.97438 * 5 4 3 32 32 H 0.97005 * 120.00161 * 359.71789 * 9 7 6 33 33 H 1.08999 * 109.47194 * 34.71875 * 10 9 7 34 34 H 1.08995 * 109.47574 * 60.00208 * 11 10 9 35 35 H 1.09002 * 109.46832 * 179.97438 * 11 10 9 36 36 H 1.08996 * 109.47149 * 180.02562 * 12 11 10 37 37 H 1.09002 * 109.46655 * 60.00467 * 12 11 10 38 38 H 1.09002 * 109.47012 * 299.99424 * 13 12 11 39 39 H 0.97004 * 120.00120 * 264.99752 * 14 13 12 40 40 H 0.97004 * 119.99574 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.47574 * 179.97438 * 23 13 12 42 42 H 1.09002 * 109.46832 * 60.00019 * 23 13 12 43 43 H 1.09002 * 109.47012 * 179.97438 * 24 10 9 44 44 H 1.08996 * 109.47599 * 300.00068 * 24 10 9 45 45 H 1.08002 * 119.99635 * 179.72658 * 25 6 5 46 46 H 1.08000 * 120.00424 * 180.20777 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3269 0.0000 0.0000 3 6 2.0653 1.2788 0.0000 4 6 3.4624 1.2787 0.0005 5 6 4.1505 2.4703 0.0011 6 6 3.4519 3.6806 0.0005 7 6 4.1903 4.9596 0.0017 8 8 5.4061 4.9595 0.0036 9 7 3.5165 6.1267 0.0006 10 6 4.2490 7.3955 0.0023 11 6 4.6040 7.7774 1.4407 12 6 3.3206 7.9284 2.2599 13 6 2.4472 9.0224 1.6425 14 7 1.2181 9.1666 2.4265 15 6 1.2049 9.9663 3.5381 16 1 2.1005 10.4909 3.8366 17 6 0.0404 10.1025 4.2813 18 7 0.0277 10.8715 5.3494 19 14 -1.5088 9.1956 3.7647 20 1 -1.5429 7.8624 4.4178 21 1 -2.7014 9.9790 4.1760 22 1 -1.5136 9.0244 2.2896 23 6 2.0922 8.6405 0.2041 24 6 3.3756 8.4894 -0.6151 25 6 2.0545 3.6804 0.0046 26 6 1.3666 2.4888 -0.0009 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8669 -0.9353 0.0004 30 1 4.0022 0.3434 0.0005 31 1 5.2305 2.4702 0.0019 32 1 2.5464 6.1267 -0.0050 33 1 5.1633 7.2880 -0.5812 34 1 5.2262 6.9981 1.8806 35 1 5.1494 8.7211 1.4420 36 1 3.5735 8.2009 3.2845 37 1 2.7756 6.9845 2.2586 38 1 2.9922 9.9663 1.6438 39 1 0.4136 8.6956 2.1583 40 1 -0.7862 10.9670 5.8685 41 1 1.4696 9.4196 -0.2356 42 1 1.5472 7.6965 0.2028 43 1 3.9204 9.4335 -0.6134 44 1 3.1226 8.2174 -1.6398 45 1 1.5144 4.6157 0.0087 46 1 0.2866 2.4886 -0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026565809.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:43 Heat of formation + Delta-G solvation = -9.197260 kcal Electronic energy + Delta-G solvation = -25757.914811 eV Core-core repulsion = 22225.626408 eV Total energy + Delta-G solvation = -3532.288403 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.54237 -40.09927 -38.98574 -36.41969 -35.18656 -34.35873 -32.97841 -31.93535 -31.72754 -30.67521 -29.33767 -25.66063 -25.01805 -23.70062 -23.55925 -22.52499 -22.15613 -20.62522 -20.38243 -19.49585 -19.11044 -17.41993 -16.91059 -16.68589 -16.43580 -16.14628 -15.92987 -15.82278 -15.26055 -15.04482 -14.89174 -14.72882 -14.36207 -14.30612 -14.15730 -13.83809 -13.65199 -13.29873 -13.19090 -13.13068 -12.89927 -12.84691 -12.25737 -12.19145 -12.07459 -11.83381 -11.81639 -11.73350 -11.41746 -11.33337 -11.14889 -11.02909 -10.86028 -10.07988 -10.03802 -9.28271 -9.21413 -8.00455 -5.33564 -0.45571 0.38378 1.27928 1.37643 1.42700 1.50085 2.06470 2.17608 2.50445 2.94984 3.30885 3.52363 3.61346 3.74007 3.81883 3.87139 3.90950 3.93685 4.19692 4.26453 4.32011 4.32958 4.35633 4.45168 4.57140 4.62319 4.63359 4.73947 4.78962 4.91867 4.99808 5.01087 5.05810 5.14951 5.22249 5.23615 5.27709 5.31536 5.34896 5.46679 5.55293 5.60239 5.63993 5.79783 5.80404 5.90424 6.24068 6.51389 7.10890 7.17688 7.87341 8.06991 9.21565 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011582 B = 0.003632 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.011338 B = 7708.432654 C = 9481.348977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.144 4.144 3 C -0.036 4.036 4 C -0.122 4.122 5 C -0.071 4.071 6 C -0.157 4.157 7 C 0.555 3.445 8 O -0.580 6.580 9 N -0.705 5.705 10 C 0.151 3.849 11 C -0.121 4.121 12 C -0.122 4.122 13 C 0.176 3.824 14 N -0.750 5.750 15 C -0.227 4.227 16 H 0.051 0.949 17 C -0.070 4.070 18 N -0.989 5.989 19 Si 0.958 3.042 20 H -0.281 1.281 21 H -0.299 1.299 22 H -0.244 1.244 23 C -0.120 4.120 24 C -0.111 4.111 25 C -0.083 4.083 26 C -0.131 4.131 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.152 0.848 31 H 0.129 0.871 32 H 0.408 0.592 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.028 0.972 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.366 0.634 40 H 0.256 0.744 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.142 0.858 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.463 -21.506 -18.236 28.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C -0.037 4.037 4 C -0.140 4.140 5 C -0.090 4.090 6 C -0.160 4.160 7 C 0.344 3.656 8 O -0.462 6.462 9 N -0.357 5.357 10 C 0.047 3.953 11 C -0.160 4.160 12 C -0.162 4.162 13 C 0.068 3.932 14 N -0.393 5.393 15 C -0.358 4.358 16 H 0.069 0.931 17 C -0.261 4.261 18 N -0.639 5.639 19 Si 0.785 3.215 20 H -0.207 1.207 21 H -0.226 1.226 22 H -0.168 1.168 23 C -0.158 4.158 24 C -0.149 4.149 25 C -0.101 4.101 26 C -0.149 4.149 27 H 0.125 0.875 28 H 0.142 0.858 29 H 0.153 0.847 30 H 0.170 0.830 31 H 0.147 0.853 32 H 0.246 0.754 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.199 0.801 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.160 0.840 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.389 -21.296 -18.096 28.151 hybrid contribution -1.118 0.024 0.782 1.365 sum 2.271 -21.272 -17.314 27.522 Atomic orbital electron populations 1.24761 0.95479 1.03657 0.95622 1.21965 0.95765 0.95438 1.02966 1.19653 0.93560 0.94239 0.96208 1.21472 0.93556 0.98382 1.00609 1.21290 1.00718 0.91385 0.95644 1.20031 0.94464 0.93125 1.08398 1.18563 0.86914 0.84697 0.75409 1.90728 1.15007 1.88214 1.52214 1.46011 1.10881 1.05087 1.73728 1.20970 0.95847 0.82704 0.95800 1.21839 0.97044 1.01481 0.95621 1.21987 0.96333 0.99594 0.98263 1.20434 0.86373 0.95860 0.90493 1.42778 1.10055 1.56264 1.30228 1.19020 0.96564 1.18906 1.01301 0.93082 1.25560 1.01536 1.01367 0.97602 1.69904 1.28707 1.44888 1.20442 0.85365 0.78924 0.77824 0.79409 1.20744 1.22596 1.16777 1.21764 0.98218 1.02008 0.93803 1.21749 0.95251 0.98484 0.99427 1.21429 0.92335 0.99711 0.96645 1.21533 1.01353 0.91194 1.00798 0.87501 0.85758 0.84675 0.83014 0.85281 0.75378 0.89520 0.93449 0.90375 0.95288 0.92852 0.94103 0.80083 0.93495 0.90832 0.91324 0.89156 0.88814 0.83999 0.83077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 14.15 66.65 0.94 -0.52 16 2 C -0.14 -1.67 9.90 23.59 0.23 -1.43 16 3 C -0.04 -0.58 5.87 -20.07 -0.12 -0.70 16 4 C -0.12 -2.07 9.76 22.48 0.22 -1.85 16 5 C -0.07 -1.54 9.58 22.49 0.22 -1.33 16 6 C -0.16 -3.62 5.88 -20.05 -0.12 -3.74 16 7 C 0.56 15.01 7.73 86.74 0.67 15.68 16 8 O -0.58 -19.63 15.99 -3.94 -0.06 -19.69 16 9 N -0.70 -16.10 4.18 -445.57 -1.86 -17.96 16 10 C 0.15 3.53 2.79 44.99 0.13 3.66 16 11 C -0.12 -3.43 5.61 30.59 0.17 -3.26 16 12 C -0.12 -4.16 5.34 30.59 0.16 -4.00 16 13 C 0.18 6.20 2.77 44.99 0.12 6.32 16 14 N -0.75 -33.50 4.92 -322.96 -1.59 -35.09 16 15 C -0.23 -12.81 10.41 84.03 0.87 -11.94 16 16 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 17 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 18 N -0.99 -63.79 13.97 21.65 0.30 -63.49 16 19 Si 0.96 44.57 27.74 68.60 1.90 46.48 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 21 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 22 H -0.24 -9.86 6.52 99.48 0.65 -9.21 16 23 C -0.12 -2.96 5.22 30.59 0.16 -2.80 16 24 C -0.11 -2.15 5.61 30.59 0.17 -1.98 16 25 C -0.08 -1.53 9.52 22.48 0.21 -1.31 16 26 C -0.13 -2.12 9.38 22.48 0.21 -1.91 16 27 H 0.11 0.90 6.02 -2.91 -0.02 0.89 16 28 H 0.12 0.70 8.06 -2.91 -0.02 0.68 16 29 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 30 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 31 H 0.13 2.89 7.64 -2.91 -0.02 2.87 16 32 H 0.41 7.75 4.88 -92.70 -0.45 7.30 16 33 H 0.09 2.10 7.57 -2.39 -0.02 2.08 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.79 7.60 -2.39 -0.02 1.77 16 38 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 39 H 0.37 15.32 5.66 -92.71 -0.52 14.80 16 40 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 1.49 6.51 -2.39 -0.02 1.47 16 43 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.14 2.07 6.38 -2.91 -0.02 2.05 16 46 H 0.15 1.74 6.15 -2.91 -0.02 1.72 16 Total: -1.00 -75.00 368.43 3.37 -71.63 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: -0.04 Total: 32.87 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 4.73 Total: -14.74 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -3.15 Total: -116.54 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.06 Total: -19.69 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.90 Total: 46.48 kcal Total: -75.00 3.37 -71.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026565809.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.432 kcal (2) G-P(sol) polarization free energy of solvation -75.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds