Wall clock time and date at job start Tue Mar 31 2020 11:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.47246 * 2 1 4 4 C 1.37976 * 120.07279 * 267.03699 * 3 2 1 5 5 C 1.38341 * 120.14072 * 180.02562 * 4 3 2 6 6 C 1.38379 * 120.29536 * 359.96877 * 5 4 3 7 7 C 1.37938 * 120.14391 * 359.75024 * 6 5 4 8 8 C 1.39560 * 120.06905 * 87.05551 * 3 2 1 9 9 C 1.47844 * 120.14589 * 359.95487 * 8 3 2 10 10 O 1.21552 * 119.99956 * 307.34039 * 9 8 3 11 11 N 1.34779 * 119.99870 * 127.34035 * 9 8 3 12 12 C 1.47158 * 120.70848 * 184.26428 * 11 9 8 13 13 C 1.53889 * 108.03227 * 132.74018 * 12 11 9 14 14 H 1.09004 * 112.09807 * 181.90910 * 13 12 11 15 15 C 1.54547 * 108.36461 * 306.24742 * 13 12 11 16 16 C 1.54828 * 104.74254 * 89.17392 * 15 13 12 17 17 C 1.54546 * 104.74506 * 0.02562 * 16 15 13 18 18 H 1.09000 * 112.68054 * 146.81188 * 17 16 15 19 19 C 1.47162 * 120.70963 * 4.24095 * 11 9 8 20 20 N 1.48305 * 104.35859 * 24.82407 * 17 16 15 21 21 C 1.36931 * 128.08079 * 139.08052 * 20 17 16 22 22 H 1.08004 * 119.99726 * 345.64572 * 21 20 17 23 23 C 1.38812 * 120.00277 * 165.63810 * 21 20 17 24 24 N 1.31613 * 120.00213 * 350.46578 * 23 21 20 25 25 Si 1.86802 * 119.99782 * 170.46534 * 23 21 20 26 26 H 1.48503 * 109.47061 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47129 * 300.00070 * 25 23 21 28 28 H 1.48492 * 109.47596 * 60.00169 * 25 23 21 29 29 H 1.09000 * 109.46891 * 299.99604 * 1 2 3 30 30 H 1.08995 * 109.46786 * 59.99615 * 1 2 3 31 31 H 1.08997 * 109.46955 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46991 * 240.00076 * 2 1 3 33 33 H 1.08997 * 109.47468 * 120.00670 * 2 1 3 34 34 H 1.08002 * 119.92969 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.84791 * 179.97438 * 5 4 3 36 36 H 1.07996 * 119.92756 * 179.97438 * 6 5 4 37 37 H 1.07997 * 120.07615 * 180.28012 * 7 6 5 38 38 H 1.08990 * 109.75297 * 13.10245 * 12 11 9 39 39 H 1.08997 * 109.79188 * 252.39154 * 12 11 9 40 40 H 1.09001 * 110.36487 * 208.13607 * 15 13 12 41 41 H 1.08999 * 110.36595 * 330.45632 * 15 13 12 42 42 H 1.08997 * 110.30761 * 241.24584 * 16 15 13 43 43 H 1.09004 * 110.61332 * 118.91054 * 16 15 13 44 44 H 1.09009 * 109.74946 * 346.89949 * 19 11 9 45 45 H 1.09005 * 109.75038 * 107.57725 * 19 11 9 46 46 H 0.97002 * 120.00472 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3211 2.0521 -1.1924 5 6 2.7828 3.3562 -1.1940 6 6 2.9577 4.0363 -0.0017 7 6 2.6673 3.4187 1.1971 8 6 2.2070 2.1008 1.2062 9 6 1.8991 1.4307 2.4876 10 8 0.8151 0.9066 2.6542 11 7 2.8204 1.4009 3.4709 12 6 2.5666 0.6592 4.7163 13 6 3.8120 -0.1894 5.0276 14 1 3.6819 -0.7948 5.9246 15 6 4.1381 -1.0493 3.7855 16 6 5.0810 -0.1667 2.9317 17 6 5.2345 1.1414 3.7403 18 1 6.2198 1.5933 3.6255 19 6 4.1018 2.1091 3.3219 20 7 4.9611 0.7416 5.1420 21 6 5.6131 1.1431 6.2772 22 1 6.5680 1.6423 6.2035 23 6 5.0468 0.9086 7.5227 24 7 3.8075 0.4742 7.6108 25 14 6.0436 1.2097 9.0735 26 1 5.2170 0.8856 10.2639 27 1 7.2520 0.3466 9.0607 28 1 6.4543 2.6356 9.1290 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.1863 1.5270 -2.1266 35 1 3.0077 3.8456 -2.1301 36 1 3.3189 5.0540 -0.0098 37 1 2.7999 3.9520 2.1267 38 1 1.7008 0.0096 4.5882 39 1 2.3845 1.3589 5.5320 40 1 4.6413 -1.9695 4.0827 41 1 3.2273 -1.2760 3.2314 42 1 4.6310 0.0380 1.9603 43 1 6.0498 -0.6502 2.8058 44 1 4.2392 2.4070 2.2823 45 1 4.1118 2.9912 3.9621 46 1 3.4119 0.3100 8.4811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029442322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:20 Heat of formation + Delta-G solvation = 24.599074 kcal Electronic energy + Delta-G solvation = -27811.699173 eV Core-core repulsion = 24280.876290 eV Total energy + Delta-G solvation = -3530.822884 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.49959 -38.91900 -37.39713 -34.27266 -33.54260 -32.38072 -31.39625 -30.20841 -29.39215 -29.20327 -26.28187 -24.35206 -23.93962 -23.57258 -22.84681 -21.10744 -19.82508 -19.59819 -18.63038 -17.37398 -16.34003 -16.05427 -15.70238 -15.32836 -15.01107 -14.69985 -14.27929 -13.80476 -13.67533 -13.44268 -13.41558 -13.03527 -12.98181 -12.87338 -12.67276 -12.10415 -11.84645 -11.73223 -11.70688 -11.54461 -11.50015 -11.04482 -10.88323 -10.82969 -10.77269 -10.67641 -10.34441 -10.06009 -9.86332 -9.67444 -9.56855 -9.29871 -8.83279 -8.76243 -8.68074 -8.04356 -6.85300 -5.84757 -3.20087 1.10873 1.35260 3.11380 3.35185 3.40752 3.41555 3.55451 3.84943 4.40611 4.75047 4.77076 4.87050 4.98461 5.17319 5.21146 5.31300 5.42368 5.51192 5.56339 5.60226 5.61649 5.69198 5.76073 5.84526 5.88039 5.94893 5.98390 6.06742 6.16264 6.21008 6.32333 6.36229 6.38948 6.43491 6.52327 6.52469 6.60666 6.65607 6.70225 6.79281 6.87885 6.90774 7.00817 7.29281 7.48961 7.68756 8.07520 8.13243 8.69231 9.04375 9.66746 10.43149 11.27791 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021456 B = 0.004299 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.683380 B = 6511.655280 C = 6934.980496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.037 4.037 4 C -0.126 4.126 5 C -0.105 4.105 6 C -0.132 4.132 7 C -0.087 4.087 8 C -0.112 4.112 9 C 0.549 3.451 10 O -0.547 6.547 11 N -0.582 5.582 12 C 0.113 3.887 13 C 0.167 3.833 14 H 0.120 0.880 15 C -0.135 4.135 16 C -0.121 4.121 17 C 0.134 3.866 18 H 0.077 0.923 19 C 0.089 3.911 20 N -0.584 5.584 21 C -0.228 4.228 22 H 0.076 0.924 23 C -0.002 4.002 24 N -0.914 5.914 25 Si 0.912 3.088 26 H -0.290 1.290 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.314 2.830 -16.274 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.037 4.037 4 C -0.144 4.144 5 C -0.124 4.124 6 C -0.150 4.150 7 C -0.105 4.105 8 C -0.115 4.115 9 C 0.336 3.664 10 O -0.427 6.427 11 N -0.313 5.313 12 C -0.010 4.010 13 C 0.059 3.941 14 H 0.138 0.862 15 C -0.174 4.174 16 C -0.160 4.160 17 C 0.025 3.975 18 H 0.095 0.905 19 C -0.037 4.037 20 N -0.305 5.305 21 C -0.356 4.356 22 H 0.094 0.906 23 C -0.199 4.199 24 N -0.559 5.559 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.212 1.212 28 H -0.211 1.211 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.873 2.553 -15.829 16.143 hybrid contribution 0.564 0.414 0.794 1.058 sum -1.309 2.967 -15.035 15.381 Atomic orbital electron populations 1.21794 0.94004 1.01702 1.02882 1.20534 0.97144 0.91891 1.02494 1.19912 0.95878 0.96362 0.91591 1.20947 1.01000 0.95234 0.97226 1.21220 0.98498 0.94596 0.98050 1.21040 1.01584 1.00137 0.92203 1.21337 0.96683 0.93801 0.98728 1.19943 1.02598 0.95280 0.93707 1.18294 0.84436 0.80314 0.83361 1.90693 1.22912 1.47666 1.81395 1.48178 1.16217 1.49905 1.17003 1.22463 0.99268 0.95849 0.83397 1.21922 0.86050 0.90221 0.95872 0.86239 1.22712 0.98066 0.98416 0.98230 1.22526 0.98854 0.97121 0.97521 1.22120 0.95326 0.92878 0.87148 0.90471 1.22888 0.84617 0.95997 1.00173 1.45190 1.36071 1.49311 0.99943 1.18953 0.99953 1.33897 0.82764 0.90614 1.24812 0.95860 1.01707 0.97557 1.69814 1.11923 1.50741 1.23470 0.86211 0.79055 0.77917 0.82598 1.21595 1.21191 1.21141 0.90056 0.93595 0.92899 0.91534 0.90788 0.85834 0.86010 0.85743 0.85462 0.91315 0.90206 0.92759 0.93009 0.93029 0.92645 0.91037 0.91664 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.69 37.16 0.36 -1.59 16 2 C -0.08 -1.12 5.37 -27.88 -0.15 -1.27 16 3 C -0.04 -0.50 5.16 -104.22 -0.54 -1.04 16 4 C -0.13 -1.42 9.68 -39.64 -0.38 -1.80 16 5 C -0.11 -1.08 10.04 -39.49 -0.40 -1.48 16 6 C -0.13 -1.45 10.03 -39.64 -0.40 -1.84 16 7 C -0.09 -1.17 7.49 -39.18 -0.29 -1.46 16 8 C -0.11 -1.73 4.87 -104.97 -0.51 -2.25 16 9 C 0.55 10.18 6.21 -12.33 -0.08 10.11 16 10 O -0.55 -11.43 13.38 5.32 0.07 -11.36 16 11 N -0.58 -11.17 2.28 -172.11 -0.39 -11.56 16 12 C 0.11 2.48 5.82 -3.22 -0.02 2.46 16 13 C 0.17 3.75 3.10 -65.64 -0.20 3.55 16 14 H 0.12 3.06 6.30 -51.93 -0.33 2.74 16 15 C -0.14 -2.61 6.23 -24.96 -0.16 -2.76 16 16 C -0.12 -2.13 6.24 -24.96 -0.16 -2.29 16 17 C 0.13 2.57 4.32 -65.21 -0.28 2.29 16 18 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 19 C 0.09 1.56 4.84 -2.76 -0.01 1.55 16 20 N -0.58 -13.66 2.80 -152.07 -0.43 -14.08 16 21 C -0.23 -5.88 10.37 -15.06 -0.16 -6.03 16 22 H 0.08 1.90 7.85 -52.48 -0.41 1.49 16 23 C 0.00 -0.06 5.42 -17.43 -0.09 -0.15 16 24 N -0.91 -24.92 10.39 55.49 0.58 -24.35 16 25 Si 0.91 21.07 29.56 -169.99 -5.03 16.04 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H 0.08 1.31 5.99 -51.93 -0.31 1.00 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.74 8.07 -51.92 -0.42 0.32 16 33 H 0.07 1.15 7.00 -51.93 -0.36 0.79 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 1.68 7.29 -52.49 -0.38 1.29 16 38 H 0.07 1.52 7.15 -51.93 -0.37 1.15 16 39 H 0.08 1.99 7.84 -51.93 -0.41 1.59 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.97 7.86 -51.93 -0.41 0.57 16 42 H 0.05 0.85 7.87 -51.93 -0.41 0.44 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.09 5.06 -51.92 -0.26 0.83 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -28.59 354.21 -10.34 -38.93 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -7.01 Total: 5.05 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -3.47 Total: -4.01 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.24 Total: -49.99 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.07 Total: -11.36 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.59 -10.34 -38.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029442322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.528 kcal (2) G-P(sol) polarization free energy of solvation -28.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds