Wall clock time and date at job start Tue Mar 31 2020 11:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.47246 * 2 1 4 4 C 1.37976 * 120.07279 * 267.03699 * 3 2 1 5 5 C 1.38341 * 120.14072 * 180.02562 * 4 3 2 6 6 C 1.38379 * 120.29536 * 359.96877 * 5 4 3 7 7 C 1.37938 * 120.14391 * 359.75024 * 6 5 4 8 8 C 1.39560 * 120.06905 * 87.05551 * 3 2 1 9 9 C 1.47844 * 120.14589 * 359.95487 * 8 3 2 10 10 O 1.21552 * 119.99956 * 307.34039 * 9 8 3 11 11 N 1.34779 * 119.99870 * 127.34035 * 9 8 3 12 12 C 1.47158 * 120.70848 * 184.26428 * 11 9 8 13 13 C 1.53889 * 108.03227 * 132.74018 * 12 11 9 14 14 H 1.09004 * 112.09807 * 181.90910 * 13 12 11 15 15 C 1.54547 * 108.36461 * 306.24742 * 13 12 11 16 16 C 1.54828 * 104.74254 * 89.17392 * 15 13 12 17 17 C 1.54546 * 104.74506 * 0.02562 * 16 15 13 18 18 H 1.09000 * 112.68054 * 146.81188 * 17 16 15 19 19 C 1.47162 * 120.70963 * 4.24095 * 11 9 8 20 20 N 1.48305 * 104.35859 * 24.82407 * 17 16 15 21 21 C 1.36931 * 128.08079 * 139.08052 * 20 17 16 22 22 H 1.08004 * 119.99726 * 345.64572 * 21 20 17 23 23 C 1.38812 * 120.00277 * 165.63810 * 21 20 17 24 24 N 1.31613 * 120.00213 * 350.46578 * 23 21 20 25 25 Si 1.86802 * 119.99782 * 170.46534 * 23 21 20 26 26 H 1.48503 * 109.47061 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47129 * 300.00070 * 25 23 21 28 28 H 1.48492 * 109.47596 * 60.00169 * 25 23 21 29 29 H 1.09000 * 109.46891 * 299.99604 * 1 2 3 30 30 H 1.08995 * 109.46786 * 59.99615 * 1 2 3 31 31 H 1.08997 * 109.46955 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46991 * 240.00076 * 2 1 3 33 33 H 1.08997 * 109.47468 * 120.00670 * 2 1 3 34 34 H 1.08002 * 119.92969 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.84791 * 179.97438 * 5 4 3 36 36 H 1.07996 * 119.92756 * 179.97438 * 6 5 4 37 37 H 1.07997 * 120.07615 * 180.28012 * 7 6 5 38 38 H 1.08990 * 109.75297 * 13.10245 * 12 11 9 39 39 H 1.08997 * 109.79188 * 252.39154 * 12 11 9 40 40 H 1.09001 * 110.36487 * 208.13607 * 15 13 12 41 41 H 1.08999 * 110.36595 * 330.45632 * 15 13 12 42 42 H 1.08997 * 110.30761 * 241.24584 * 16 15 13 43 43 H 1.09004 * 110.61332 * 118.91054 * 16 15 13 44 44 H 1.09009 * 109.74946 * 346.89949 * 19 11 9 45 45 H 1.09005 * 109.75038 * 107.57725 * 19 11 9 46 46 H 0.97002 * 120.00472 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3211 2.0521 -1.1924 5 6 2.7828 3.3562 -1.1940 6 6 2.9577 4.0363 -0.0017 7 6 2.6673 3.4187 1.1971 8 6 2.2070 2.1008 1.2062 9 6 1.8991 1.4307 2.4876 10 8 0.8151 0.9066 2.6542 11 7 2.8204 1.4009 3.4709 12 6 2.5666 0.6592 4.7163 13 6 3.8120 -0.1894 5.0276 14 1 3.6819 -0.7948 5.9246 15 6 4.1381 -1.0493 3.7855 16 6 5.0810 -0.1667 2.9317 17 6 5.2345 1.1414 3.7403 18 1 6.2198 1.5933 3.6255 19 6 4.1018 2.1091 3.3219 20 7 4.9611 0.7416 5.1420 21 6 5.6131 1.1431 6.2772 22 1 6.5680 1.6423 6.2035 23 6 5.0468 0.9086 7.5227 24 7 3.8075 0.4742 7.6108 25 14 6.0436 1.2097 9.0735 26 1 5.2170 0.8856 10.2639 27 1 7.2520 0.3466 9.0607 28 1 6.4543 2.6356 9.1290 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.1863 1.5270 -2.1266 35 1 3.0077 3.8456 -2.1301 36 1 3.3189 5.0540 -0.0098 37 1 2.7999 3.9520 2.1267 38 1 1.7008 0.0096 4.5882 39 1 2.3845 1.3589 5.5320 40 1 4.6413 -1.9695 4.0827 41 1 3.2273 -1.2760 3.2314 42 1 4.6310 0.0380 1.9603 43 1 6.0498 -0.6502 2.8058 44 1 4.2392 2.4070 2.2823 45 1 4.1118 2.9912 3.9621 46 1 3.4119 0.3100 8.4811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029442322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:19 Heat of formation + Delta-G solvation = 10.901211 kcal Electronic energy + Delta-G solvation = -27812.293157 eV Core-core repulsion = 24280.876290 eV Total energy + Delta-G solvation = -3531.416868 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.87634 -40.21460 -38.81587 -35.64458 -34.85257 -34.15195 -32.73002 -31.59962 -31.00202 -30.34698 -27.89333 -25.86075 -25.55982 -24.74893 -24.06112 -22.21972 -21.29450 -21.17016 -20.20312 -18.84289 -17.91152 -17.28895 -16.97054 -16.67019 -16.56265 -16.30054 -15.53447 -15.37584 -14.85632 -14.72548 -14.62234 -14.59806 -14.40731 -14.16112 -13.95721 -13.56103 -13.29359 -13.27743 -13.04040 -12.85499 -12.71807 -12.65835 -12.56650 -12.51194 -12.02112 -11.85979 -11.75801 -11.70686 -11.51714 -11.46021 -11.17228 -10.85945 -10.59448 -9.79280 -9.77070 -9.59534 -8.71507 -7.84386 -5.20246 0.11503 0.44594 1.49261 1.51048 1.57128 1.74812 2.12186 2.51323 2.83278 3.34745 3.45797 3.56652 3.83029 3.91226 4.03496 4.11375 4.17281 4.22004 4.29421 4.33857 4.39553 4.50272 4.54574 4.58649 4.59907 4.65237 4.70759 4.81380 4.94770 4.95805 4.99564 5.03326 5.06070 5.10452 5.12904 5.22235 5.27211 5.36433 5.45687 5.46577 5.52219 5.56361 5.56784 5.65328 5.83529 6.03715 6.22122 6.58262 7.05398 7.21129 7.72852 8.51567 9.26743 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021456 B = 0.004299 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.683380 B = 6511.655280 C = 6934.980496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.049 4.049 4 C -0.122 4.122 5 C -0.092 4.092 6 C -0.126 4.126 7 C -0.099 4.099 8 C -0.139 4.139 9 C 0.549 3.451 10 O -0.579 6.579 11 N -0.586 5.586 12 C 0.130 3.870 13 C 0.166 3.834 14 H 0.081 0.919 15 C -0.126 4.126 16 C -0.108 4.108 17 C 0.128 3.872 18 H 0.094 0.906 19 C 0.099 3.901 20 N -0.603 5.603 21 C -0.232 4.232 22 H 0.083 0.917 23 C -0.056 4.056 24 N -0.940 5.940 25 Si 0.972 3.028 26 H -0.300 1.300 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.043 0.957 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.153 0.847 37 H 0.121 0.879 38 H 0.056 0.944 39 H 0.039 0.961 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.050 0.950 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 4.120 -20.265 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.050 4.050 4 C -0.139 4.139 5 C -0.110 4.110 6 C -0.143 4.143 7 C -0.118 4.118 8 C -0.142 4.142 9 C 0.338 3.662 10 O -0.460 6.460 11 N -0.317 5.317 12 C 0.006 3.994 13 C 0.058 3.942 14 H 0.099 0.901 15 C -0.165 4.165 16 C -0.147 4.147 17 C 0.020 3.980 18 H 0.112 0.888 19 C -0.026 4.026 20 N -0.325 5.325 21 C -0.361 4.361 22 H 0.101 0.899 23 C -0.250 4.250 24 N -0.587 5.587 25 Si 0.801 3.199 26 H -0.227 1.227 27 H -0.207 1.207 28 H -0.205 1.205 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.062 0.938 34 H 0.171 0.829 35 H 0.178 0.822 36 H 0.171 0.829 37 H 0.139 0.861 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.122 0.878 45 H 0.068 0.932 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.157 3.862 -19.865 20.237 hybrid contribution -0.013 0.065 1.923 1.924 sum -0.171 3.927 -17.941 18.367 Atomic orbital electron populations 1.21724 0.94319 1.01891 1.02013 1.20523 0.96883 0.92180 1.02341 1.20046 0.96476 0.96487 0.91953 1.21292 0.99725 0.95792 0.97120 1.21696 0.96079 0.93989 0.99229 1.21386 1.00273 1.01304 0.91364 1.21386 0.97435 0.93091 0.99894 1.19739 1.05850 0.96376 0.92227 1.18916 0.83523 0.79511 0.84204 1.90674 1.24197 1.49018 1.82134 1.48148 1.17231 1.50049 1.16247 1.21944 0.98754 0.94866 0.83831 1.21728 0.86227 0.90390 0.95817 0.90066 1.22580 0.98702 0.98266 0.96963 1.22437 0.99184 0.95652 0.97386 1.22400 0.96519 0.94066 0.84968 0.88810 1.22830 0.83256 0.94778 1.01698 1.45364 1.35976 1.49905 1.01206 1.19302 1.00191 1.32848 0.83771 0.89926 1.25527 0.96731 1.02543 1.00194 1.70026 1.13293 1.52324 1.23099 0.85256 0.77585 0.77920 0.79107 1.22685 1.20670 1.20463 0.93588 0.91609 0.92252 0.88644 0.93830 0.82911 0.82216 0.82901 0.86120 0.92588 0.94281 0.92457 0.92939 0.91316 0.91015 0.87772 0.93165 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.69 71.98 0.70 -2.97 16 2 C -0.08 -2.07 5.37 29.85 0.16 -1.91 16 3 C -0.05 -1.22 5.16 -19.61 -0.10 -1.32 16 4 C -0.12 -2.16 9.68 22.23 0.22 -1.94 16 5 C -0.09 -1.37 10.04 22.33 0.22 -1.15 16 6 C -0.13 -2.20 10.03 22.23 0.22 -1.98 16 7 C -0.10 -2.46 7.49 22.53 0.17 -2.29 16 8 C -0.14 -4.13 4.87 -20.09 -0.10 -4.23 16 9 C 0.55 20.89 6.21 86.79 0.54 21.42 16 10 O -0.58 -25.48 13.38 -3.88 -0.05 -25.53 16 11 N -0.59 -23.19 2.28 -816.71 -1.87 -25.06 16 12 C 0.13 6.12 5.82 86.55 0.50 6.62 16 13 C 0.17 7.84 3.10 45.46 0.14 7.98 16 14 H 0.08 4.46 6.30 -2.39 -0.02 4.45 16 15 C -0.13 -4.90 6.23 31.74 0.20 -4.70 16 16 C -0.11 -3.60 6.24 31.74 0.20 -3.40 16 17 C 0.13 4.76 4.32 45.76 0.20 4.96 16 18 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 19 C 0.10 3.45 4.84 86.85 0.42 3.87 16 20 N -0.60 -28.70 2.80 -635.04 -1.78 -30.48 16 21 C -0.23 -12.18 10.37 84.03 0.87 -11.31 16 22 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 23 C -0.06 -3.03 5.42 84.86 0.46 -2.57 16 24 N -0.94 -54.13 10.39 21.65 0.22 -53.90 16 25 Si 0.97 44.38 29.56 68.60 2.03 46.41 16 26 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 28 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 29 H 0.05 1.52 5.99 -2.39 -0.01 1.50 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.80 8.07 -2.38 -0.02 1.79 16 33 H 0.04 1.35 7.00 -2.39 -0.02 1.33 16 34 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.12 3.06 7.29 -2.91 -0.02 3.04 16 38 H 0.06 2.70 7.15 -2.39 -0.02 2.68 16 39 H 0.04 2.12 7.84 -2.39 -0.02 2.10 16 40 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 2.01 7.86 -2.39 -0.02 1.99 16 42 H 0.07 2.09 7.87 -2.39 -0.02 2.07 16 43 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.10 2.98 5.06 -2.38 -0.01 2.97 16 45 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -66.46 354.21 4.55 -61.92 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.97 Total: 21.56 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 5.02 Total: 5.08 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -3.42 Total: -109.44 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.05 Total: -25.53 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -66.46 4.55 -61.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029442322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.819 kcal (2) G-P(sol) polarization free energy of solvation -66.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds