Wall clock time and date at job start Tue Mar 31 2020 10:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38261 * 119.99975 * 2 1 4 4 C 1.38213 * 119.99850 * 180.23366 * 3 2 1 5 5 C 1.38252 * 120.00002 * 359.80886 * 4 3 2 6 6 C 1.38217 * 120.00432 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.00295 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47094 * 269.97805 * 7 6 5 9 9 O 1.21285 * 120.00078 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00313 * 180.02562 * 8 7 6 11 11 C 1.47165 * 120.70399 * 359.71906 * 10 8 7 12 12 C 1.54319 * 107.80180 * 132.68703 * 11 10 8 13 13 H 1.09002 * 112.53242 * 182.37066 * 12 11 10 14 14 C 1.54541 * 107.98269 * 306.73609 * 12 11 10 15 15 C 1.55854 * 105.00083 * 89.00747 * 14 12 11 16 16 C 1.54547 * 104.09709 * 0.02562 * 15 14 12 17 17 H 1.08999 * 112.18400 * 146.81392 * 16 15 14 18 18 C 1.47156 * 120.71153 * 180.02562 * 10 8 7 19 19 N 1.48306 * 107.10335 * 58.61710 * 12 11 10 20 20 C 1.36933 * 128.07878 * 106.57721 * 19 12 11 21 21 H 1.08007 * 119.99822 * 164.94144 * 20 19 12 22 22 C 1.38809 * 120.00280 * 344.93306 * 20 19 12 23 23 N 1.31626 * 119.99856 * 350.62178 * 22 20 19 24 24 Si 1.86794 * 120.00204 * 170.61296 * 22 20 19 25 25 H 1.48499 * 109.46783 * 94.82405 * 24 22 20 26 26 H 1.48506 * 109.47128 * 214.82030 * 24 22 20 27 27 H 1.48498 * 109.47308 * 334.81911 * 24 22 20 28 28 C 1.38217 * 120.00266 * 179.80779 * 2 1 3 29 29 H 1.09009 * 109.47051 * 270.19091 * 1 2 3 30 30 H 1.08996 * 109.47216 * 30.19238 * 1 2 3 31 31 H 1.08998 * 109.47097 * 150.19226 * 1 2 3 32 32 H 1.08001 * 120.00057 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.99786 * 179.78221 * 4 3 2 34 34 H 1.08007 * 120.00052 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.47070 * 29.97807 * 7 6 5 36 36 H 1.09000 * 109.47554 * 149.97644 * 7 6 5 37 37 H 1.09002 * 109.74517 * 252.38981 * 11 10 8 38 38 H 1.08990 * 109.75358 * 13.12123 * 11 10 8 39 39 H 1.09000 * 110.36469 * 207.86239 * 14 12 11 40 40 H 1.08996 * 110.36715 * 330.06375 * 14 12 11 41 41 H 1.08997 * 110.90326 * 241.33475 * 15 14 12 42 42 H 1.09000 * 110.55362 * 118.52281 * 15 14 12 43 43 H 1.09006 * 109.75099 * 346.86997 * 18 10 8 44 44 H 1.09000 * 109.75856 * 107.56019 * 18 10 8 45 45 H 0.96993 * 119.99859 * 179.97438 * 23 22 20 46 46 H 1.08003 * 119.99350 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0049 5 6 4.2716 0.0000 -0.0058 6 6 3.5806 -1.1970 -0.0012 7 6 4.3341 -2.5020 -0.0028 8 6 4.5787 -2.9392 -1.4241 9 8 4.1799 -2.2582 -2.3451 10 7 5.2397 -4.0874 -1.6718 11 6 5.7347 -4.9230 -0.5662 12 6 5.3275 -6.3824 -0.8589 13 1 5.6222 -7.0660 -0.0627 14 6 3.8042 -6.4100 -1.1178 15 6 3.6508 -6.1655 -2.6494 16 6 5.1039 -6.0163 -3.1542 17 1 5.2305 -6.4050 -4.1646 18 6 5.4875 -4.5288 -3.0535 19 7 5.9291 -6.7497 -2.1638 20 6 6.9970 -7.5738 -2.3994 21 1 7.1813 -7.9473 -3.3960 22 6 7.8427 -7.9290 -1.3577 23 7 7.7329 -7.3339 -0.1887 24 14 9.1366 -9.2516 -1.6145 25 1 10.4279 -8.6162 -1.9806 26 1 9.3054 -10.0290 -0.3605 27 1 8.7051 -10.1609 -2.7063 28 6 2.1981 -1.1970 0.0040 29 1 -0.3634 0.0034 1.0277 30 1 -0.3633 0.8882 -0.5168 31 1 -0.3633 -0.8917 -0.5108 32 1 1.6583 2.1327 0.0004 33 1 4.1204 2.1327 -0.0084 34 1 5.3517 0.0000 -0.0100 35 1 5.2889 -2.3709 0.5064 36 1 3.7475 -3.2610 0.5149 37 1 6.8202 -4.8456 -0.5036 38 1 5.2868 -4.5958 0.3720 39 1 3.3909 -7.3815 -0.8467 40 1 3.3095 -5.6180 -0.5556 41 1 3.0864 -5.2533 -2.8429 42 1 3.1693 -7.0189 -3.1268 43 1 4.8778 -3.9437 -3.7421 44 1 6.5424 -4.4022 -3.2971 45 1 8.3236 -7.5824 0.5393 46 1 1.6581 -2.1322 0.0076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029448151.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:13 Heat of formation + Delta-G solvation = 19.099136 kcal Electronic energy + Delta-G solvation = -26825.687092 eV Core-core repulsion = 23294.625713 eV Total energy + Delta-G solvation = -3531.061379 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.17229 -39.20823 -37.61613 -33.69256 -33.43452 -32.44378 -31.93368 -30.59101 -29.24188 -28.00102 -26.85263 -25.79634 -23.85401 -23.63655 -22.11896 -21.00126 -19.76441 -19.47500 -18.46346 -17.07678 -16.45394 -16.01363 -15.75498 -15.22469 -15.14969 -14.75001 -14.39097 -13.93400 -13.76314 -13.62938 -13.12351 -13.03066 -12.90938 -12.82688 -12.72003 -12.39852 -11.94008 -11.84147 -11.74953 -11.66935 -11.50972 -11.13288 -10.96382 -10.94081 -10.87379 -10.77927 -10.33998 -10.07583 -9.88801 -9.63596 -9.60412 -9.37624 -8.83548 -8.67546 -8.48660 -8.04024 -6.86883 -5.89277 -3.23093 1.41499 1.47632 3.14227 3.32797 3.39778 3.40701 3.55835 3.93740 4.39005 4.73841 4.81797 4.92407 5.07963 5.15979 5.22449 5.29505 5.30342 5.37423 5.50535 5.56227 5.62939 5.66051 5.70428 5.72335 5.77180 5.79106 5.91180 6.00203 6.09474 6.15714 6.17686 6.28468 6.38677 6.50899 6.51552 6.59165 6.60998 6.63679 6.70752 6.71448 6.86575 6.96885 7.08847 7.23931 7.43978 7.62693 8.07843 8.12598 8.73324 9.01953 9.63859 10.40790 11.24324 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025862 B = 0.003302 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.427815 B = 8478.022427 C = 8799.452597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.089 4.089 3 C -0.127 4.127 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.050 4.050 7 C -0.103 4.103 8 C 0.510 3.490 9 O -0.557 6.557 10 N -0.592 5.592 11 C 0.102 3.898 12 C 0.168 3.832 13 H 0.119 0.881 14 C -0.134 4.134 15 C -0.124 4.124 16 C 0.133 3.867 17 H 0.076 0.924 18 C 0.103 3.897 19 N -0.584 5.584 20 C -0.223 4.223 21 H 0.076 0.924 22 C -0.004 4.004 23 N -0.916 5.916 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C -0.106 4.106 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.254 0.746 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.381 11.353 3.184 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.145 4.145 4 C -0.135 4.135 5 C -0.130 4.130 6 C -0.051 4.051 7 C -0.143 4.143 8 C 0.297 3.703 9 O -0.437 6.437 10 N -0.324 5.324 11 C -0.022 4.022 12 C 0.060 3.940 13 H 0.137 0.863 14 C -0.173 4.173 15 C -0.163 4.163 16 C 0.025 3.975 17 H 0.094 0.906 18 C -0.021 4.021 19 N -0.305 5.305 20 C -0.351 4.351 21 H 0.094 0.906 22 C -0.201 4.201 23 N -0.562 5.562 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.124 4.124 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.344 11.530 2.800 15.741 hybrid contribution 0.916 -0.646 -0.040 1.122 sum -9.428 10.883 2.760 14.661 Atomic orbital electron populations 1.20767 0.91421 1.02679 1.02024 1.19838 0.95870 0.93143 1.00043 1.20944 0.94253 0.97236 1.02077 1.21037 0.94274 0.97740 1.00445 1.20970 0.99718 0.92014 1.00271 1.19356 0.93492 0.93879 0.98365 1.20710 1.01967 0.95591 0.96021 1.20335 0.78390 0.80894 0.90653 1.90650 1.52471 1.54249 1.46298 1.48222 1.54433 1.21364 1.08383 1.22708 1.00339 0.92762 0.86365 1.21946 0.87598 0.92784 0.91661 0.86297 1.22893 0.99357 0.99601 0.95473 1.22738 0.97258 0.99814 0.96536 1.21973 0.90872 0.89983 0.94671 0.90571 1.22340 1.00463 0.97023 0.82319 1.45156 1.32877 1.52011 1.00501 1.19025 1.01095 1.19562 0.95456 0.90581 1.24806 0.98376 1.00300 0.96590 1.69818 1.40583 1.43156 1.02684 0.86109 0.81344 0.81283 0.77025 1.21643 1.21619 1.20640 1.20850 0.93443 0.97529 1.00539 0.91389 0.91754 0.91581 0.86509 0.86309 0.86367 0.88212 0.88193 0.89895 0.92132 0.92755 0.93274 0.92580 0.92724 0.90820 0.92153 0.93558 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 2 C -0.09 -1.08 5.88 -104.62 -0.62 -1.69 16 3 C -0.13 -1.47 9.70 -39.58 -0.38 -1.86 16 4 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 5 C -0.11 -1.51 9.70 -39.58 -0.38 -1.90 16 6 C -0.05 -0.72 4.37 -104.63 -0.46 -1.18 16 7 C -0.10 -1.47 4.21 -29.04 -0.12 -1.60 16 8 C 0.51 9.19 7.70 -10.98 -0.08 9.10 16 9 O -0.56 -11.66 15.50 5.55 0.09 -11.58 16 10 N -0.59 -11.12 2.25 -171.22 -0.38 -11.50 16 11 C 0.10 1.97 5.74 -2.99 -0.02 1.95 16 12 C 0.17 3.56 3.13 -65.44 -0.20 3.35 16 13 H 0.12 2.85 6.37 -51.93 -0.33 2.52 16 14 C -0.13 -2.44 6.22 -24.40 -0.15 -2.59 16 15 C -0.12 -2.23 6.31 -24.39 -0.15 -2.39 16 16 C 0.13 2.66 4.28 -65.63 -0.28 2.38 16 17 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 18 C 0.10 2.02 5.89 -3.19 -0.02 2.00 16 19 N -0.58 -13.60 2.81 -152.31 -0.43 -14.03 16 20 C -0.22 -5.75 10.37 -15.06 -0.16 -5.91 16 21 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 22 C 0.00 -0.10 5.42 -17.43 -0.09 -0.20 16 23 N -0.92 -24.11 10.43 55.49 0.58 -23.53 16 24 Si 0.91 20.86 29.56 -169.99 -5.03 15.83 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 C -0.11 -1.43 9.36 -39.58 -0.37 -1.80 16 29 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.10 1.30 7.99 -51.93 -0.42 0.88 16 36 H 0.10 1.27 7.55 -51.93 -0.39 0.88 16 37 H 0.08 1.86 7.84 -51.93 -0.41 1.46 16 38 H 0.06 0.99 6.08 -51.93 -0.32 0.68 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 41 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.42 7.11 -51.93 -0.37 1.05 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 46 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -29.23 364.09 -10.46 -39.68 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.24 Total: 4.43 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -3.53 Total: -4.80 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.23 Total: -49.06 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.23 -10.46 -39.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029448151.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.782 kcal (2) G-P(sol) polarization free energy of solvation -29.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds