Wall clock time and date at job start Tue Mar 31 2020 10:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38261 * 119.99975 * 2 1 4 4 C 1.38213 * 119.99850 * 180.23366 * 3 2 1 5 5 C 1.38252 * 120.00002 * 359.80886 * 4 3 2 6 6 C 1.38217 * 120.00432 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.00295 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47094 * 269.97805 * 7 6 5 9 9 O 1.21285 * 120.00078 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00313 * 180.02562 * 8 7 6 11 11 C 1.47165 * 120.70399 * 359.71906 * 10 8 7 12 12 C 1.54319 * 107.80180 * 132.68703 * 11 10 8 13 13 H 1.09002 * 112.53242 * 182.37066 * 12 11 10 14 14 C 1.54541 * 107.98269 * 306.73609 * 12 11 10 15 15 C 1.55854 * 105.00083 * 89.00747 * 14 12 11 16 16 C 1.54547 * 104.09709 * 0.02562 * 15 14 12 17 17 H 1.08999 * 112.18400 * 146.81392 * 16 15 14 18 18 C 1.47156 * 120.71153 * 180.02562 * 10 8 7 19 19 N 1.48306 * 107.10335 * 58.61710 * 12 11 10 20 20 C 1.36933 * 128.07878 * 106.57721 * 19 12 11 21 21 H 1.08007 * 119.99822 * 164.94144 * 20 19 12 22 22 C 1.38809 * 120.00280 * 344.93306 * 20 19 12 23 23 N 1.31626 * 119.99856 * 350.62178 * 22 20 19 24 24 Si 1.86794 * 120.00204 * 170.61296 * 22 20 19 25 25 H 1.48499 * 109.46783 * 94.82405 * 24 22 20 26 26 H 1.48506 * 109.47128 * 214.82030 * 24 22 20 27 27 H 1.48498 * 109.47308 * 334.81911 * 24 22 20 28 28 C 1.38217 * 120.00266 * 179.80779 * 2 1 3 29 29 H 1.09009 * 109.47051 * 270.19091 * 1 2 3 30 30 H 1.08996 * 109.47216 * 30.19238 * 1 2 3 31 31 H 1.08998 * 109.47097 * 150.19226 * 1 2 3 32 32 H 1.08001 * 120.00057 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.99786 * 179.78221 * 4 3 2 34 34 H 1.08007 * 120.00052 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.47070 * 29.97807 * 7 6 5 36 36 H 1.09000 * 109.47554 * 149.97644 * 7 6 5 37 37 H 1.09002 * 109.74517 * 252.38981 * 11 10 8 38 38 H 1.08990 * 109.75358 * 13.12123 * 11 10 8 39 39 H 1.09000 * 110.36469 * 207.86239 * 14 12 11 40 40 H 1.08996 * 110.36715 * 330.06375 * 14 12 11 41 41 H 1.08997 * 110.90326 * 241.33475 * 15 14 12 42 42 H 1.09000 * 110.55362 * 118.52281 * 15 14 12 43 43 H 1.09006 * 109.75099 * 346.86997 * 18 10 8 44 44 H 1.09000 * 109.75856 * 107.56019 * 18 10 8 45 45 H 0.96993 * 119.99859 * 179.97438 * 23 22 20 46 46 H 1.08003 * 119.99350 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0049 5 6 4.2716 0.0000 -0.0058 6 6 3.5806 -1.1970 -0.0012 7 6 4.3341 -2.5020 -0.0028 8 6 4.5787 -2.9392 -1.4241 9 8 4.1799 -2.2582 -2.3451 10 7 5.2397 -4.0874 -1.6718 11 6 5.7347 -4.9230 -0.5662 12 6 5.3275 -6.3824 -0.8589 13 1 5.6222 -7.0660 -0.0627 14 6 3.8042 -6.4100 -1.1178 15 6 3.6508 -6.1655 -2.6494 16 6 5.1039 -6.0163 -3.1542 17 1 5.2305 -6.4050 -4.1646 18 6 5.4875 -4.5288 -3.0535 19 7 5.9291 -6.7497 -2.1638 20 6 6.9970 -7.5738 -2.3994 21 1 7.1813 -7.9473 -3.3960 22 6 7.8427 -7.9290 -1.3577 23 7 7.7329 -7.3339 -0.1887 24 14 9.1366 -9.2516 -1.6145 25 1 10.4279 -8.6162 -1.9806 26 1 9.3054 -10.0290 -0.3605 27 1 8.7051 -10.1609 -2.7063 28 6 2.1981 -1.1970 0.0040 29 1 -0.3634 0.0034 1.0277 30 1 -0.3633 0.8882 -0.5168 31 1 -0.3633 -0.8917 -0.5108 32 1 1.6583 2.1327 0.0004 33 1 4.1204 2.1327 -0.0084 34 1 5.3517 0.0000 -0.0100 35 1 5.2889 -2.3709 0.5064 36 1 3.7475 -3.2610 0.5149 37 1 6.8202 -4.8456 -0.5036 38 1 5.2868 -4.5958 0.3720 39 1 3.3909 -7.3815 -0.8467 40 1 3.3095 -5.6180 -0.5556 41 1 3.0864 -5.2533 -2.8429 42 1 3.1693 -7.0189 -3.1268 43 1 4.8778 -3.9437 -3.7421 44 1 6.5424 -4.4022 -3.2971 45 1 8.3236 -7.5824 0.5393 46 1 1.6581 -2.1322 0.0076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029448151.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:12 Heat of formation + Delta-G solvation = 6.002153 kcal Electronic energy + Delta-G solvation = -26826.255020 eV Core-core repulsion = 23294.625713 eV Total energy + Delta-G solvation = -3531.629307 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61760 -40.31034 -39.08128 -35.35653 -34.52576 -34.09712 -32.92633 -32.12862 -31.00634 -29.17655 -27.74417 -27.31130 -25.41201 -25.37991 -23.08821 -22.10329 -21.35118 -20.90372 -20.08297 -18.61771 -17.70472 -17.37337 -17.08780 -16.76594 -16.34635 -16.29157 -15.67064 -15.43910 -15.08567 -14.69575 -14.63201 -14.42505 -14.21663 -14.01942 -13.82190 -13.54386 -13.43366 -13.21745 -13.11604 -12.89559 -12.77614 -12.70642 -12.66379 -12.54962 -11.97129 -11.90215 -11.81908 -11.79599 -11.48675 -11.42697 -11.14787 -10.93817 -10.59672 -9.70172 -9.64123 -9.44136 -8.68339 -7.84963 -5.18817 0.45403 0.53720 1.49140 1.51425 1.58934 1.71312 2.16199 2.51924 2.89943 3.34709 3.50371 3.70633 3.81863 3.92162 4.07864 4.08994 4.16077 4.23347 4.27122 4.34569 4.37096 4.46047 4.50708 4.56700 4.63729 4.66710 4.73216 4.81124 4.84240 4.87088 4.99036 5.01644 5.04063 5.07842 5.15822 5.21908 5.33422 5.36390 5.37034 5.55616 5.59289 5.63433 5.70016 5.74211 5.85035 6.17816 6.24958 6.62256 7.09740 7.26778 7.73175 8.52832 9.26718 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025862 B = 0.003302 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.427815 B = 8478.022427 C = 8799.452597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.123 4.123 5 C -0.132 4.132 6 C -0.070 4.070 7 C -0.096 4.096 8 C 0.512 3.488 9 O -0.585 6.585 10 N -0.593 5.593 11 C 0.116 3.884 12 C 0.163 3.837 13 H 0.090 0.910 14 C -0.125 4.125 15 C -0.113 4.113 16 C 0.129 3.871 17 H 0.079 0.921 18 C 0.109 3.891 19 N -0.604 5.604 20 C -0.236 4.236 21 H 0.072 0.928 22 C -0.049 4.049 23 N -0.931 5.931 24 Si 0.968 3.032 25 H -0.293 1.293 26 H -0.293 1.293 27 H -0.276 1.276 28 C -0.123 4.123 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.038 0.962 45 H 0.249 0.751 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.153 12.368 3.652 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.141 4.141 5 C -0.151 4.151 6 C -0.071 4.071 7 C -0.135 4.135 8 C 0.301 3.699 9 O -0.467 6.467 10 N -0.325 5.325 11 C -0.008 4.008 12 C 0.055 3.945 13 H 0.107 0.893 14 C -0.164 4.164 15 C -0.152 4.152 16 C 0.021 3.979 17 H 0.097 0.903 18 C -0.016 4.016 19 N -0.326 5.326 20 C -0.365 4.365 21 H 0.090 0.910 22 C -0.244 4.244 23 N -0.578 5.578 24 Si 0.798 3.202 25 H -0.221 1.221 26 H -0.220 1.220 27 H -0.201 1.201 28 C -0.141 4.141 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.138 12.554 3.264 17.765 hybrid contribution 1.447 -0.879 -0.226 1.708 sum -10.691 11.675 3.038 16.119 Atomic orbital electron populations 1.20814 0.89389 1.03347 1.03165 1.20238 0.97521 0.92886 0.99041 1.21323 0.94290 0.98262 1.01029 1.21367 0.94880 0.98158 0.99656 1.21178 1.00131 0.92624 1.01123 1.19447 0.94035 0.93876 0.99717 1.20709 1.03054 0.96411 0.93363 1.20941 0.77104 0.79820 0.91992 1.90633 1.53494 1.54822 1.47708 1.48218 1.54698 1.21812 1.07738 1.22423 0.98388 0.92121 0.87824 1.21911 0.89491 0.92955 0.90096 0.89264 1.22802 0.96993 1.00706 0.95881 1.22639 0.95677 1.00626 0.96253 1.22121 0.91692 0.89643 0.94394 0.90310 1.22158 0.99191 0.97011 0.83238 1.45340 1.32822 1.52298 1.02161 1.19244 1.01915 1.19924 0.95367 0.90983 1.25427 1.00168 1.02120 0.96680 1.69964 1.41028 1.43937 1.02919 0.85229 0.79092 0.79220 0.76656 1.22056 1.21963 1.20106 1.21064 0.93372 0.98524 1.01152 0.89924 0.90452 0.91572 0.83924 0.84148 0.86176 0.87029 0.86270 0.93496 0.88911 0.92362 0.91113 0.91838 0.91616 0.90349 0.94328 0.94129 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 10.01 71.24 0.71 -1.01 16 2 C -0.10 -2.14 5.88 -19.86 -0.12 -2.25 16 3 C -0.13 -2.72 9.70 22.27 0.22 -2.50 16 4 C -0.12 -2.73 10.05 22.27 0.22 -2.51 16 5 C -0.13 -3.45 9.70 22.27 0.22 -3.23 16 6 C -0.07 -1.92 4.37 -19.87 -0.09 -2.00 16 7 C -0.10 -2.59 4.21 29.10 0.12 -2.47 16 8 C 0.51 17.88 7.70 87.65 0.67 18.56 16 9 O -0.59 -24.05 15.50 -3.05 -0.05 -24.09 16 10 N -0.59 -21.91 2.25 -814.01 -1.83 -23.74 16 11 C 0.12 4.46 5.74 86.70 0.50 4.95 16 12 C 0.16 6.87 3.13 45.62 0.14 7.01 16 13 H 0.09 4.34 6.37 -2.39 -0.02 4.32 16 14 C -0.12 -4.32 6.22 32.11 0.20 -4.12 16 15 C -0.11 -3.86 6.31 32.11 0.20 -3.65 16 16 C 0.13 5.10 4.28 45.49 0.19 5.30 16 17 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 18 C 0.11 4.28 5.89 86.58 0.51 4.79 16 19 N -0.60 -28.34 2.81 -635.79 -1.79 -30.13 16 20 C -0.24 -12.31 10.37 84.03 0.87 -11.44 16 21 H 0.07 3.71 7.85 -2.91 -0.02 3.69 16 22 C -0.05 -2.58 5.42 84.86 0.46 -2.12 16 23 N -0.93 -49.98 10.43 21.65 0.23 -49.75 16 24 Si 0.97 43.45 29.56 68.60 2.03 45.47 16 25 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 27 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 28 C -0.12 -3.12 9.36 22.27 0.21 -2.92 16 29 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 31 H 0.07 1.03 8.09 -2.39 -0.02 1.01 16 32 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.12 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.11 2.73 7.99 -2.39 -0.02 2.71 16 36 H 0.12 2.73 7.55 -2.39 -0.02 2.71 16 37 H 0.05 2.15 7.84 -2.39 -0.02 2.13 16 38 H 0.09 2.91 6.08 -2.39 -0.01 2.89 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.07 2.14 7.85 -2.39 -0.02 2.12 16 41 H 0.06 2.09 7.84 -2.39 -0.02 2.07 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.08 2.99 7.11 -2.38 -0.02 2.98 16 44 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.25 13.15 8.31 -92.71 -0.77 12.38 16 46 H 0.12 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -63.09 364.09 4.80 -58.29 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.96 Total: 23.57 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 5.25 Total: 0.38 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -3.39 Total: -103.62 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -63.09 4.80 -58.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029448151.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.295 kcal (2) G-P(sol) polarization free energy of solvation -63.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds