Wall clock time and date at job start Tue Mar 31 2020 10:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38382 * 119.92580 * 2 1 4 4 C 1.38342 * 120.29406 * 179.97438 * 3 2 1 5 5 C 1.37979 * 120.14131 * 359.74682 * 4 3 2 6 6 C 1.50698 * 120.07539 * 180.25278 * 5 4 3 7 7 C 1.39562 * 119.85215 * 0.48388 * 5 4 3 8 8 C 1.47842 * 120.14537 * 179.78983 * 7 5 4 9 9 O 1.21557 * 120.00008 * 307.90641 * 8 7 5 10 10 N 1.34783 * 120.00266 * 127.89999 * 8 7 5 11 11 C 1.47161 * 120.71206 * 184.03517 * 10 8 7 12 12 C 1.53889 * 108.02892 * 132.75101 * 11 10 8 13 13 H 1.08997 * 112.57961 * 182.22666 * 12 11 10 14 14 C 1.54144 * 107.70948 * 306.32524 * 12 11 10 15 15 C 1.54279 * 104.88978 * 89.41130 * 14 12 11 16 16 C 1.54554 * 104.84897 * 359.80633 * 15 14 12 17 17 H 1.09002 * 112.18099 * 146.40840 * 16 15 14 18 18 C 1.49240 * 120.76333 * 4.11328 * 10 8 7 19 19 N 1.48310 * 107.20837 * 58.36063 * 12 11 10 20 20 C 1.36933 * 128.07632 * 106.70465 * 19 12 11 21 21 H 1.07991 * 120.00105 * 159.86249 * 20 19 12 22 22 C 1.38817 * 119.99762 * 339.85553 * 20 19 12 23 23 N 1.31620 * 119.99953 * 353.39696 * 22 20 19 24 24 Si 1.86796 * 119.99704 * 173.39787 * 22 20 19 25 25 H 1.48508 * 109.47052 * 180.02562 * 24 22 20 26 26 H 1.48502 * 109.47326 * 299.99872 * 24 22 20 27 27 H 1.48497 * 109.47519 * 60.00315 * 24 22 20 28 28 C 1.37936 * 119.92721 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47252 * 270.02194 * 1 2 3 30 30 H 1.09005 * 109.47495 * 30.01913 * 1 2 3 31 31 H 1.08999 * 109.47335 * 150.01990 * 1 2 3 32 32 H 1.07996 * 119.85697 * 0.02746 * 3 2 1 33 33 H 1.07994 * 119.93051 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47036 * 274.54910 * 6 5 4 35 35 H 1.09001 * 109.47376 * 34.54912 * 6 5 4 36 36 H 1.08997 * 109.47373 * 154.54826 * 6 5 4 37 37 H 1.09007 * 109.75070 * 13.12174 * 11 10 8 38 38 H 1.08992 * 109.79093 * 252.40888 * 11 10 8 39 39 H 1.09000 * 110.50270 * 330.47427 * 14 12 11 40 40 H 1.09001 * 110.27256 * 208.23352 * 14 12 11 41 41 H 1.08994 * 110.36048 * 240.96754 * 15 14 12 42 42 H 1.08997 * 110.36352 * 118.64451 * 15 14 12 43 43 H 1.09003 * 110.51644 * 107.82269 * 18 10 8 44 44 H 1.08998 * 109.75124 * 346.59931 * 18 10 8 45 45 H 0.97005 * 119.99650 * 179.97438 * 23 22 20 46 46 H 1.07993 * 120.07284 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2082 0.0005 5 6 4.2812 0.0195 0.0063 6 6 5.7882 0.0309 0.0127 7 6 3.5911 -1.1936 0.0015 8 6 4.3352 -2.4711 0.0030 9 8 5.2037 -2.6696 -0.8240 10 7 4.0507 -3.4157 0.9213 11 6 4.8398 -4.6557 0.9934 12 6 5.2096 -4.9000 2.4671 13 1 5.8315 -5.7850 2.6014 14 6 5.8941 -3.6243 2.9964 15 6 4.7428 -2.7532 3.5404 16 6 3.4638 -3.5825 3.2847 17 1 2.7140 -3.4324 4.0615 18 6 2.9278 -3.2284 1.8864 19 7 3.9404 -4.9859 3.2295 20 6 3.3495 -6.1000 3.7631 21 1 2.6206 -5.9985 4.5535 22 6 3.6873 -7.3598 3.2879 23 7 4.4751 -7.4785 2.2402 24 14 3.0239 -8.8864 4.1355 25 1 3.5291 -10.0976 3.4403 26 1 3.4760 -8.9034 5.5499 27 1 1.5397 -8.8722 4.0904 28 6 2.1952 -1.1954 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6538 2.1325 0.0004 33 1 4.1136 2.1476 0.0001 34 1 6.1552 0.1127 -1.0104 35 1 6.1427 0.8815 0.5949 36 1 6.1567 -0.8931 0.4581 37 1 5.7471 -4.5501 0.3986 38 1 4.2489 -5.4914 0.6185 39 1 6.4128 -3.1066 2.1896 40 1 6.5914 -3.8740 3.7961 41 1 4.6955 -1.8073 3.0010 42 1 4.8729 -2.5762 4.6080 43 1 2.0942 -3.8841 1.6346 44 1 2.5979 -2.1896 1.8706 45 1 4.7114 -8.3588 1.9084 46 1 1.6552 -2.1307 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029564638.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:58 Heat of formation + Delta-G solvation = 22.567072 kcal Electronic energy + Delta-G solvation = -27672.253412 eV Core-core repulsion = 24141.342414 eV Total energy + Delta-G solvation = -3530.910998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.44904 -38.97637 -37.48786 -33.90960 -33.57715 -32.40091 -31.40879 -30.24822 -29.26899 -29.19304 -26.38618 -24.95680 -24.05561 -23.87863 -22.90214 -21.22396 -19.72317 -19.47917 -18.48974 -17.16310 -16.18978 -15.93750 -15.64911 -15.28625 -14.97407 -14.69714 -14.07366 -13.94144 -13.72325 -13.41419 -13.23638 -13.02666 -12.99184 -12.75058 -12.68602 -12.54775 -11.92636 -11.84905 -11.71102 -11.60796 -11.44090 -11.36045 -11.04427 -10.99935 -10.86657 -10.81050 -10.34244 -10.04705 -9.86617 -9.76097 -9.55862 -9.30972 -8.77630 -8.74719 -8.45649 -8.04100 -6.79960 -5.86731 -3.24322 1.11917 1.34173 3.12691 3.34666 3.39983 3.40924 3.53582 3.82519 4.40141 4.70603 4.76913 4.85392 4.96793 5.14128 5.17688 5.31636 5.34485 5.49678 5.52193 5.61791 5.63957 5.70704 5.71972 5.76875 5.78457 5.87773 5.94546 5.95989 5.98413 6.22287 6.25308 6.31433 6.34413 6.40529 6.51474 6.53488 6.57973 6.64749 6.71747 6.80564 6.86817 6.93536 7.00565 7.31405 7.49453 7.68285 8.06657 8.13444 8.70045 9.03812 9.65650 10.44752 11.26912 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.004386 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.210609 B = 6382.234107 C = 6960.600315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.105 4.105 4 C -0.124 4.124 5 C -0.045 4.045 6 C -0.114 4.114 7 C -0.110 4.110 8 C 0.549 3.451 9 O -0.552 6.552 10 N -0.585 5.585 11 C 0.112 3.888 12 C 0.172 3.828 13 H 0.111 0.889 14 C -0.136 4.136 15 C -0.121 4.121 16 C 0.133 3.867 17 H 0.077 0.923 18 C 0.092 3.908 19 N -0.583 5.583 20 C -0.231 4.231 21 H 0.074 0.926 22 C 0.002 3.998 23 N -0.911 5.911 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.285 1.285 27 H -0.284 1.284 28 C -0.086 4.086 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.256 0.744 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.844 16.228 -2.218 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.123 4.123 4 C -0.142 4.142 5 C -0.046 4.046 6 C -0.171 4.171 7 C -0.113 4.113 8 C 0.337 3.663 9 O -0.432 6.432 10 N -0.316 5.316 11 C -0.010 4.010 12 C 0.064 3.936 13 H 0.129 0.871 14 C -0.176 4.176 15 C -0.161 4.161 16 C 0.024 3.976 17 H 0.095 0.905 18 C -0.032 4.032 19 N -0.304 5.304 20 C -0.359 4.359 21 H 0.092 0.908 22 C -0.196 4.196 23 N -0.556 5.556 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.104 4.104 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.066 0.934 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.398 15.770 -2.638 16.346 hybrid contribution -0.482 -0.825 0.342 1.015 sum -3.880 14.945 -2.296 15.610 Atomic orbital electron populations 1.20772 0.90962 1.02709 1.02443 1.19795 0.96160 0.92818 1.01227 1.21089 0.94087 0.97396 0.99723 1.20916 0.94053 0.97282 1.01993 1.19881 0.96360 0.91573 0.96822 1.20815 0.90660 1.02860 1.02718 1.19938 0.93813 0.93668 1.03914 1.18267 0.83170 0.83359 0.81531 1.90735 1.33847 1.80230 1.38437 1.48697 1.32436 1.18758 1.31722 1.22475 0.94961 0.83824 0.99778 1.21676 0.88346 0.95237 0.88299 0.87091 1.22576 0.97227 0.98301 0.99446 1.22450 0.96512 0.97539 0.99556 1.21961 0.94805 0.87392 0.93420 0.90547 1.23075 0.88837 1.00069 0.91264 1.45108 1.20912 1.00897 1.63478 1.18911 1.20818 0.83167 1.13022 0.90842 1.24925 1.00165 0.97726 0.96809 1.69841 1.39007 1.22725 1.24000 0.86224 0.78476 0.82401 0.78722 1.21582 1.21135 1.21070 1.21212 0.92725 0.98192 0.98301 0.91053 0.91667 0.91482 0.86025 0.85746 0.90647 0.91799 0.91011 0.91453 0.89820 0.92958 0.92859 0.92976 0.92687 0.91343 0.90959 0.93381 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.10 -1.16 5.87 -104.68 -0.61 -1.77 16 3 C -0.10 -1.12 9.69 -39.49 -0.38 -1.50 16 4 C -0.12 -1.43 9.71 -39.64 -0.38 -1.82 16 5 C -0.05 -0.64 5.91 -104.22 -0.62 -1.26 16 6 C -0.11 -1.53 9.21 36.00 0.33 -1.20 16 7 C -0.11 -1.76 4.93 -104.97 -0.52 -2.28 16 8 C 0.55 10.56 6.21 -12.33 -0.08 10.48 16 9 O -0.55 -12.15 15.30 5.32 0.08 -12.07 16 10 N -0.59 -11.47 2.28 -170.92 -0.39 -11.86 16 11 C 0.11 2.50 5.75 -3.22 -0.02 2.48 16 12 C 0.17 3.89 3.07 -65.87 -0.20 3.69 16 13 H 0.11 2.84 6.64 -51.93 -0.34 2.50 16 14 C -0.14 -2.64 6.16 -25.46 -0.16 -2.80 16 15 C -0.12 -2.15 6.19 -25.25 -0.16 -2.31 16 16 C 0.13 2.56 4.27 -65.65 -0.28 2.28 16 17 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 18 C 0.09 1.65 4.86 -2.06 -0.01 1.64 16 19 N -0.58 -13.68 2.79 -152.83 -0.43 -14.10 16 20 C -0.23 -5.97 10.36 -15.06 -0.16 -6.13 16 21 H 0.07 1.85 7.84 -52.49 -0.41 1.44 16 22 C 0.00 0.04 5.43 -17.43 -0.09 -0.05 16 23 N -0.91 -24.86 10.26 55.49 0.57 -24.29 16 24 Si 0.91 21.03 29.56 -169.99 -5.02 16.00 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 C -0.09 -1.20 7.10 -39.19 -0.28 -1.47 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.69 8.12 -51.93 -0.42 0.26 16 36 H 0.07 1.13 6.55 -51.93 -0.34 0.79 16 37 H 0.07 1.52 7.15 -51.92 -0.37 1.15 16 38 H 0.08 2.12 7.51 -51.93 -0.39 1.73 16 39 H 0.05 0.99 7.83 -51.93 -0.41 0.59 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.87 7.86 -51.93 -0.41 0.46 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.07 1.12 5.09 -51.93 -0.26 0.86 16 45 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.13 1.76 7.20 -52.49 -0.38 1.38 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -29.27 357.45 -10.15 -39.42 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.09 Total: 4.16 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -3.25 Total: -2.65 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.25 Total: -50.25 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.27 -10.15 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029564638.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.990 kcal (2) G-P(sol) polarization free energy of solvation -29.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds